Literature DB >> 32214235

Construction of a human cell landscape at single-cell level.

Xiaoping Han1,2, Ziming Zhou3, Lijiang Fei3, Huiyu Sun3, Renying Wang3, Yao Chen4, Haide Chen3,5, Jingjing Wang3,5, Huanna Tang6, Wenhao Ge7, Yincong Zhou8, Fang Ye3, Mengmeng Jiang3, Junqing Wu3, Yanyu Xiao3, Xiaoning Jia9, Tingyue Zhang3, Xiaojie Ma10, Qi Zhang11, Xueli Bai11, Shujing Lai3, Chengxuan Yu3, Lijun Zhu7, Rui Lin12, Yuchi Gao13, Min Wang14, Yiqing Wu4, Jianming Zhang15, Renya Zhan16, Saiyong Zhu10, Hailan Hu9, Changchun Wang17, Ming Chen8, He Huang18,19,20, Tingbo Liang11, Jianghua Chen6, Weilin Wang7, Dan Zhang4, Guoji Guo21,22,23,24,25.   

Abstract

Single-cell analysis is a valuable tool for dissecting cellular heterogeneity in complex systems1. However, a comprehensive single-cell atlas has not been achieved for humans. Here we use single-cell mRNA sequencing to determine the cell-type composition of all major human organs and construct a scheme for the human cell landscape (HCL). We have uncovered a single-cell hierarchy for many tissues that have not been well characterized. We established a 'single-cell HCL analysis' pipeline that helps to define human cell identity. Finally, we performed a single-cell comparative analysis of landscapes from human and mouse to identify conserved genetic networks. We found that stem and progenitor cells exhibit strong transcriptomic stochasticity, whereas differentiated cells are more distinct. Our results provide a useful resource for the study of human biology.

Entities:  

Mesh:

Substances:

Year:  2020        PMID: 32214235     DOI: 10.1038/s41586-020-2157-4

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  64 in total

1.  Cnidarian Cell Type Diversity and Regulation Revealed by Whole-Organism Single-Cell RNA-Seq.

Authors:  Arnau Sebé-Pedrós; Baptiste Saudemont; Elad Chomsky; Flora Plessier; Marie-Pierre Mailhé; Justine Renno; Yann Loe-Mie; Aviezer Lifshitz; Zohar Mukamel; Sandrine Schmutz; Sophie Novault; Patrick R H Steinmetz; François Spitz; Amos Tanay; Heather Marlow
Journal:  Cell       Date:  2018-05-31       Impact factor: 41.582

2.  Proceedings: On the presence of dopamine in the mammalian spinal cord.

Authors:  J W Commissiong; E M Sedgwick
Journal:  Br J Pharmacol       Date:  1974-05       Impact factor: 8.739

3.  [Osler's disease].

Authors:  J C Potier
Journal:  Infirm Fr       Date:  1972-02

4.  Cell type atlas and lineage tree of a whole complex animal by single-cell transcriptomics.

Authors:  Mireya Plass; Jordi Solana; F Alexander Wolf; Salah Ayoub; Aristotelis Misios; Petar Glažar; Benedikt Obermayer; Fabian J Theis; Christine Kocks; Nikolaus Rajewsky
Journal:  Science       Date:  2018-04-19       Impact factor: 47.728

5.  Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo.

Authors:  Daniel E Wagner; Caleb Weinreb; Zach M Collins; James A Briggs; Sean G Megason; Allon M Klein
Journal:  Science       Date:  2018-04-26       Impact factor: 47.728

6.  mRNA-Seq whole-transcriptome analysis of a single cell.

Authors:  Fuchou Tang; Catalin Barbacioru; Yangzhou Wang; Ellen Nordman; Clarence Lee; Nanlan Xu; Xiaohui Wang; John Bodeau; Brian B Tuch; Asim Siddiqui; Kaiqin Lao; M Azim Surani
Journal:  Nat Methods       Date:  2009-04-06       Impact factor: 28.547

Review 7.  Scaling single-cell genomics from phenomenology to mechanism.

Authors:  Amos Tanay; Aviv Regev
Journal:  Nature       Date:  2017-01-18       Impact factor: 49.962

8.  Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.

Authors:  Daniel Ramsköld; Shujun Luo; Yu-Chieh Wang; Robin Li; Qiaolin Deng; Omid R Faridani; Gregory A Daniels; Irina Khrebtukova; Jeanne F Loring; Louise C Laurent; Gary P Schroth; Rickard Sandberg
Journal:  Nat Biotechnol       Date:  2012-08       Impact factor: 54.908

9.  Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.

Authors:  Alex K Shalek; Rahul Satija; Xian Adiconis; Rona S Gertner; Jellert T Gaublomme; Raktima Raychowdhury; Schraga Schwartz; Nir Yosef; Christine Malboeuf; Diana Lu; John J Trombetta; Dave Gennert; Andreas Gnirke; Alon Goren; Nir Hacohen; Joshua Z Levin; Hongkun Park; Aviv Regev
Journal:  Nature       Date:  2013-05-19       Impact factor: 49.962

10.  Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq.

Authors:  Barbara Treutlein; Doug G Brownfield; Angela R Wu; Norma F Neff; Gary L Mantalas; F Hernan Espinoza; Tushar J Desai; Mark A Krasnow; Stephen R Quake
Journal:  Nature       Date:  2014-04-13       Impact factor: 49.962

View more
  194 in total

Review 1.  Tutorial: guidelines for annotating single-cell transcriptomic maps using automated and manual methods.

Authors:  Zoe A Clarke; Tallulah S Andrews; Jawairia Atif; Delaram Pouyabahar; Brendan T Innes; Sonya A MacParland; Gary D Bader
Journal:  Nat Protoc       Date:  2021-05-24       Impact factor: 13.491

Review 2.  Prioritization of cell types responsive to biological perturbations in single-cell data with Augur.

Authors:  Jordan W Squair; Michael A Skinnider; Matthieu Gautier; Leonard J Foster; Grégoire Courtine
Journal:  Nat Protoc       Date:  2021-06-25       Impact factor: 13.491

Review 3.  The Application of Single-Cell RNA Sequencing in Studies of Autoimmune Diseases: a Comprehensive Review.

Authors:  Mingming Zhao; Jiao Jiang; Ming Zhao; Christopher Chang; Haijing Wu; Qianjin Lu
Journal:  Clin Rev Allergy Immunol       Date:  2020-11-25       Impact factor: 8.667

4.  CSEA-DB: an omnibus for human complex trait and cell type associations.

Authors:  Yulin Dai; Ruifeng Hu; Astrid Marilyn Manuel; Andi Liu; Peilin Jia; Zhongming Zhao
Journal:  Nucleic Acids Res       Date:  2021-01-08       Impact factor: 16.971

5.  Cellular Tropism of SARS-CoV-2 across Human Tissues and Age-related Expression of ACE2 and TMPRSS2 in Immune-inflammatory Stromal Cells.

Authors:  Ming Zheng
Journal:  Aging Dis       Date:  2021-06-01       Impact factor: 6.745

6.  Landmarks of human embryonic development inscribed in somatic mutations.

Authors:  Sara Bizzotto; Yanmei Dou; Javier Ganz; Ryan N Doan; Minseok Kwon; Craig L Bohrson; Sonia N Kim; Taejeong Bae; Alexej Abyzov; Peter J Park; Christopher A Walsh
Journal:  Science       Date:  2021-03-19       Impact factor: 47.728

7.  Deep generative model embedding of single-cell RNA-Seq profiles on hyperspheres and hyperbolic spaces.

Authors:  Jiarui Ding; Aviv Regev
Journal:  Nat Commun       Date:  2021-05-05       Impact factor: 14.919

8.  Integrative analysis of the human brain mural cell transcriptome.

Authors:  Benjamin D Gastfriend; Koji L Foreman; Moriah E Katt; Sean P Palecek; Eric V Shusta
Journal:  J Cereb Blood Flow Metab       Date:  2021-05-22       Impact factor: 6.200

9.  Longitudinal single-cell RNA-seq of hESCs-derived retinal organoids.

Authors:  Shaojun Wang; Sergio Poli; Xiaoliang Liang; Guang-Hua Peng
Journal:  Sci China Life Sci       Date:  2021-01-27       Impact factor: 6.038

10.  A comprehensive prognostic signature for glioblastoma patients based on transcriptomics and single cell sequencing.

Authors:  Fan Fan; Hao Zhang; Ziyu Dai; Yakun Zhang; Zhiwei Xia; Hui Cao; Kui Yang; Shui Hu; Yong Guo; Fengqin Ding; Quan Cheng; Nan Zhang
Journal:  Cell Oncol (Dordr)       Date:  2021-06-17       Impact factor: 6.730

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.