Literature DB >> 35403737

3D imaging for driving cancer discovery.

Ravian L van Ineveld1,2, Esmée J van Vliet1,2, Ellen J Wehrens1,2, Maria Alieva1,2, Anne C Rios1,2.   

Abstract

Our understanding of the cellular composition and architecture of cancer has primarily advanced using 2D models and thin slice samples. This has granted spatial information on fundamental cancer biology and treatment response. However, tissues contain a variety of interconnected cells with different functional states and shapes, and this complex organization is impossible to capture in a single plane. Furthermore, tumours have been shown to be highly heterogenous, requiring large-scale spatial analysis to reliably profile their cellular and structural composition. Volumetric imaging permits the visualization of intact biological samples, thereby revealing the spatio-phenotypic and dynamic traits of cancer. This review focuses on new insights into cancer biology uniquely brought to light by 3D imaging and concomitant progress in cancer modelling and quantitative analysis. 3D imaging has the potential to generate broad knowledge advance from major mechanisms of tumour progression to new strategies for cancer treatment and patient diagnosis. We discuss the expected future contributions of the newest imaging trends towards these goals and the challenges faced for reaching their full application in cancer research.
© 2022 The Authors.

Entities:  

Keywords:  3D imaging; archival tissue; cancer (immuno)therapy; cancer biology

Mesh:

Year:  2022        PMID: 35403737      PMCID: PMC9108604          DOI: 10.15252/embj.2021109675

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   14.012


  214 in total

1.  Three-dimensional imaging of solvent-cleared organs using 3DISCO.

Authors:  Ali Ertürk; Klaus Becker; Nina Jährling; Christoph P Mauch; Caroline D Hojer; Jackson G Egen; Farida Hellal; Frank Bradke; Morgan Sheng; Hans-Ulrich Dodt
Journal:  Nat Protoc       Date:  2012-10-11       Impact factor: 13.491

2.  High-Spatial-Resolution Multi-Omics Sequencing via Deterministic Barcoding in Tissue.

Authors:  Yang Liu; Mingyu Yang; Yanxiang Deng; Graham Su; Archibald Enninful; Cindy C Guo; Toma Tebaldi; Di Zhang; Dongjoo Kim; Zhiliang Bai; Eileen Norris; Alisia Pan; Jiatong Li; Yang Xiao; Stephanie Halene; Rong Fan
Journal:  Cell       Date:  2020-11-13       Impact factor: 41.582

Review 3.  Unravelling cellular relationships during development and regeneration using genetic lineage tracing.

Authors:  Chloé S Baron; Alexander van Oudenaarden
Journal:  Nat Rev Mol Cell Biol       Date:  2019-11-05       Impact factor: 94.444

4.  Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.

Authors:  Nicolas Renier; Eliza L Adams; Christoph Kirst; Zhuhao Wu; Ricardo Azevedo; Johannes Kohl; Anita E Autry; Lolahon Kadiri; Kannan Umadevi Venkataraju; Yu Zhou; Victoria X Wang; Cheuk Y Tang; Olav Olsen; Catherine Dulac; Pavel Osten; Marc Tessier-Lavigne
Journal:  Cell       Date:  2016-05-26       Impact factor: 41.582

5.  Whole-Body Profiling of Cancer Metastasis with Single-Cell Resolution.

Authors:  Shimpei I Kubota; Kei Takahashi; Jun Nishida; Yasuyuki Morishita; Shogo Ehata; Kazuki Tainaka; Kohei Miyazono; Hiroki R Ueda
Journal:  Cell Rep       Date:  2017-07-05       Impact factor: 9.423

6.  High-dimensional cell-level analysis of tissues with Ce3D multiplex volume imaging.

Authors:  Weizhe Li; Ronald N Germain; Michael Y Gerner
Journal:  Nat Protoc       Date:  2019-04-26       Impact factor: 13.491

7.  Essential role for a novel population of binucleated mammary epithelial cells in lactation.

Authors:  Anne C Rios; Nai Yang Fu; Paul R Jamieson; Bhupinder Pal; Lachlan Whitehead; Kevin R Nicholas; Geoffrey J Lindeman; Jane E Visvader
Journal:  Nat Commun       Date:  2016-04-22       Impact factor: 14.919

8.  Anatomy and function of the vertebral column lymphatic network in mice.

Authors:  Laurent Jacob; Ligia Simoes Braga Boisserand; Luiz Henrique Medeiros Geraldo; Jose de Brito Neto; Thomas Mathivet; Salli Antila; Besma Barka; Yunling Xu; Jean-Mickael Thomas; Juliette Pestel; Marie-Stéphane Aigrot; Eric Song; Harri Nurmi; Seyoung Lee; Kari Alitalo; Nicolas Renier; Anne Eichmann; Jean-Leon Thomas
Journal:  Nat Commun       Date:  2019-10-09       Impact factor: 14.919

9.  BMP9 signaling promotes the normalization of tumor blood vessels.

Authors:  Claire Viallard; Cindy Audiger; Natalija Popovic; Naoufal Akla; Kevin Lanthier; Isaac Legault-Navarrete; Heather Melichar; Santiago Costantino; Sylvie Lesage; Bruno Larrivée
Journal:  Oncogene       Date:  2020-02-10       Impact factor: 8.756

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  1 in total

Review 1.  3D imaging for driving cancer discovery.

Authors:  Ravian L van Ineveld; Esmée J van Vliet; Ellen J Wehrens; Maria Alieva; Anne C Rios
Journal:  EMBO J       Date:  2022-04-11       Impact factor: 14.012

  1 in total

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