Literature DB >> 27238021

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.

Nicolas Renier1, Eliza L Adams1, Christoph Kirst2, Zhuhao Wu1, Ricardo Azevedo1, Johannes Kohl3, Anita E Autry3, Lolahon Kadiri4, Kannan Umadevi Venkataraju5, Yu Zhou6, Victoria X Wang6, Cheuk Y Tang6, Olav Olsen1, Catherine Dulac3, Pavel Osten7, Marc Tessier-Lavigne8.   

Abstract

Understanding how neural information is processed in physiological and pathological states would benefit from precise detection, localization, and quantification of the activity of all neurons across the entire brain, which has not, to date, been achieved in the mammalian brain. We introduce a pipeline for high-speed acquisition of brain activity at cellular resolution through profiling immediate early gene expression using immunostaining and light-sheet fluorescence imaging, followed by automated mapping and analysis of activity by an open-source software program we term ClearMap. We validate the pipeline first by analysis of brain regions activated in response to haloperidol. Next, we report new cortical regions downstream of whisker-evoked sensory processing during active exploration. Last, we combine activity mapping with axon tracing to uncover new brain regions differentially activated during parenting behavior. This pipeline is widely applicable to different experimental paradigms, including animal species for which transgenic activity reporters are not readily available.
Copyright © 2016 Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27238021      PMCID: PMC4912438          DOI: 10.1016/j.cell.2016.05.007

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  38 in total

1.  Brain-wide neuronal dynamics during motor adaptation in zebrafish.

Authors:  Misha B Ahrens; Jennifer M Li; Michael B Orger; Drew N Robson; Alexander F Schier; Florian Engert; Ruben Portugues
Journal:  Nature       Date:  2012-05-09       Impact factor: 49.962

2.  Distinct sensory requirements for unimodal and cross-modal homeostatic synaptic plasticity.

Authors:  Kaiwen He; Emily Petrus; Nicholas Gammon; Hey-Kyoung Lee
Journal:  J Neurosci       Date:  2012-06-20       Impact factor: 6.167

3.  Advanced CUBIC protocols for whole-brain and whole-body clearing and imaging.

Authors:  Etsuo A Susaki; Kazuki Tainaka; Dimitri Perrin; Hiroko Yukinaga; Akihiro Kuno; Hiroki R Ueda
Journal:  Nat Protoc       Date:  2015-10-08       Impact factor: 13.491

4.  Induction of c-fos-like protein in spinal cord neurons following sensory stimulation.

Authors:  S P Hunt; A Pini; G Evan
Journal:  Nature       Date:  1987 Aug 13-19       Impact factor: 49.962

5.  Mapping social behavior-induced brain activation at cellular resolution in the mouse.

Authors:  Yongsoo Kim; Kannan Umadevi Venkataraju; Kith Pradhan; Carolin Mende; Julian Taranda; Srinivas C Turaga; Ignacio Arganda-Carreras; Lydia Ng; Michael J Hawrylycz; Kathleen S Rockland; H Sebastian Seung; Pavel Osten
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

6.  Neural correlates of competing fear behaviors evoked by an innately aversive stimulus.

Authors:  Raymond Mongeau; Gabriel A Miller; Elizabeth Chiang; David J Anderson
Journal:  J Neurosci       Date:  2003-05-01       Impact factor: 6.167

7.  Behavioral transition from attack to parenting in male mice: a crucial role of the vomeronasal system.

Authors:  Kashiko S Tachikawa; Yoshihiro Yoshihara; Kumi O Kuroda
Journal:  J Neurosci       Date:  2013-03-20       Impact factor: 6.167

8.  Deep brain optical measurements of cell type-specific neural activity in behaving mice.

Authors:  Guohong Cui; Sang Beom Jun; Xin Jin; Guoxiang Luo; Michael D Pham; David M Lovinger; Steven S Vogel; Rui M Costa
Journal:  Nat Protoc       Date:  2014-05-01       Impact factor: 13.491

9.  Intact-Brain Analyses Reveal Distinct Information Carried by SNc Dopamine Subcircuits.

Authors:  Talia N Lerner; Carrie Shilyansky; Thomas J Davidson; Kathryn E Evans; Kevin T Beier; Kelly A Zalocusky; Ailey K Crow; Robert C Malenka; Liqun Luo; Raju Tomer; Karl Deisseroth
Journal:  Cell       Date:  2015-07-30       Impact factor: 41.582

10.  Whole-brain activity mapping onto a zebrafish brain atlas.

Authors:  Owen Randlett; Caroline L Wee; Eva A Naumann; Onyeka Nnaemeka; David Schoppik; James E Fitzgerald; Ruben Portugues; Alix M B Lacoste; Clemens Riegler; Florian Engert; Alexander F Schier
Journal:  Nat Methods       Date:  2015-11       Impact factor: 28.547

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  222 in total

Review 1.  Identifying Cellular and Molecular Mechanisms for Magnetosensation.

Authors:  Benjamin L Clites; Jonathan T Pierce
Journal:  Annu Rev Neurosci       Date:  2017-07-25       Impact factor: 12.449

Review 2.  A beginner's guide to tissue clearing.

Authors:  Pablo Ariel
Journal:  Int J Biochem Cell Biol       Date:  2017-01-07       Impact factor: 5.085

3.  Ecotype differences in aggression, neural activity and behaviorally relevant gene expression in cichlid fish.

Authors:  Nicole M Baran; J Todd Streelman
Journal:  Genes Brain Behav       Date:  2020-05-08       Impact factor: 3.449

4.  Differential fear conditioning generates prefrontal neural ensembles of safety signals.

Authors:  Alex Corches; Alex Hiroto; Tyler W Bailey; John H Speigel; Justin Pastore; Mark Mayford; Edward Korzus
Journal:  Behav Brain Res       Date:  2018-11-28       Impact factor: 3.332

5.  Neuronally Enriched RUFY3 Is Required for Caspase-Mediated Axon Degeneration.

Authors:  Nicholas T Hertz; Eliza L Adams; Ross A Weber; Rebecca J Shen; Melanie K O'Rourke; David J Simon; Henry Zebroski; Olav Olsen; Charles W Morgan; Trevor R Mileur; Angela M Hitchcock; Nicholas A Sinnott Armstrong; Michael Wainberg; Michael C Bassik; Henrik Molina; James A Wells; Marc Tessier-Lavigne
Journal:  Neuron       Date:  2019-06-17       Impact factor: 17.173

6.  Imaging and Manipulating Pituitary Function in the Awake Mouse.

Authors:  Ombeline Hoa; Chrystel Lafont; Pierre Fontanaud; Anne Guillou; Yasmine Kemkem; Rhonda D Kineman; Raul M Luque; Tatiana Fiordelisio Coll; Paul Le Tissier; Patrice Mollard
Journal:  Endocrinology       Date:  2019-10-01       Impact factor: 4.736

7.  Glomerular endothelial cell maturation depends on ADAM10, a key regulator of Notch signaling.

Authors:  Gregory Farber; Romulo Hurtado; Sarah Loh; Sébastien Monette; James Mtui; Raphael Kopan; Susan Quaggin; Catherine Meyer-Schwesinger; Doris Herzlinger; Rizaldy P Scott; Carl P Blobel
Journal:  Angiogenesis       Date:  2018-02-03       Impact factor: 9.596

Review 8.  Activity-Regulated Transcription: Bridging the Gap between Neural Activity and Behavior.

Authors:  Ee-Lynn Yap; Michael E Greenberg
Journal:  Neuron       Date:  2018-10-24       Impact factor: 17.173

9.  Anatomically Defined and Functionally Distinct Dorsal Raphe Serotonin Sub-systems.

Authors:  Jing Ren; Drew Friedmann; Jing Xiong; Cindy D Liu; Brielle R Ferguson; Tanya Weerakkody; Katherine E DeLoach; Chen Ran; Albert Pun; Yanwen Sun; Brandon Weissbourd; Rachael L Neve; John Huguenard; Mark A Horowitz; Liqun Luo
Journal:  Cell       Date:  2018-08-23       Impact factor: 41.582

10.  Revisiting the role of Dcc in visual system development with a novel eye clearing method.

Authors:  Robin J Vigouroux; Quénol Cesar; Alain Chédotal; Kim Tuyen Nguyen-Ba-Charvet
Journal:  Elife       Date:  2020-02-25       Impact factor: 8.140

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