| Literature DB >> 35345791 |
Roya Dolatkhah1, Mohammad Hossein Somi2, Saeed Dastgiri3, Mohammad Asghari Jafarabadi4, Hossein Mashhadi Abdolahi3, Dariush Shanehbandi5, Milad Asadi5,6, Marzieh Nezamdoust7, Neda Dolatkhah8, Faris Farassati9.
Abstract
Background: Globally, colorectal cancer (CRC) is the third most common cancer and the second leading cause of death from cancer. Incidence and mortality from CRCboth can be reduced and prevented using screening and early detection programs. The current study aimed to assess the feasibility of the colorectal cancer screening program in Northwest of Iran.Entities:
Keywords: Colonoscopy; Colorectal cancer; Diagnostic accuracy; Screening; Stool based test
Year: 2022 PMID: 35345791 PMCID: PMC8956879 DOI: 10.1016/j.amsu.2022.103494
Source DB: PubMed Journal: Ann Med Surg (Lond) ISSN: 2049-0801
Primer and conditions used to investigate KRAS gene mutations.
| Primer | F: GTTTGTATTAAAAGGTACTGGTGG | |||
|---|---|---|---|---|
| Product Length | 170bp | |||
| PCR Cycling | Stage | Temperature | Time | Repeat No. |
| Pre- incubation | 94 C | 600s | 1 | |
| Denaturation | 94 C | 15s | 45 | |
| Annealing | 60 c | 30s | ||
| Extension | 72 C | 20 | ||
| Final Extension | 72 C | 300 s | 1 | |
| HRM | Equipment default | −1 | ||
Primer and conditions used to investigate BRAF gene mutations.
| Primer | F:TCATGAAGACCTCACAGTAAAAATAGG-3′ | |||
|---|---|---|---|---|
| Product Length | 164bp | |||
| PCRCycling | Stage | Temperature | Time | Repeat Number |
| Pre- incubation | 94 C | 600s | 1 | |
| Denaturation | 94 C | 15s | 45 | |
| Annealing | 59 c | 30s | ||
| Extension | 72 C | 20 | ||
| Final Extension | 72 C | 300 s | 1 | |
| HRM | Equipment default | −1 | ||
Primer sequences and PCR conditions for investigation of BMP-3 gene methylation.
| Primer sequence | TTTAGTTTGGTGTAAGTTAAGAGGG | |||
|---|---|---|---|---|
| Product Length | 141 | |||
| PCR conditions | Stage | Temperature | Time | Repeat Number |
| Pre- incubation | 94 C | 600s | 1 | |
| Denaturation | 94 C | 15s | 45 | |
| Annealing | 60 c | 30s | ||
| Extension | 72 C | 20 | ||
| Final Extension | 72 C | 600s | 1 | |
| HRM | Equipment default- | −1 | ||
Primer sequences and PCR conditions for investigation ofNDRG-4gene methylation.
| Primer sequences | AGGGTTTTTGTTTTTTAATTAGTGT | |||
|---|---|---|---|---|
| Product Length | 161 | |||
| PCR conditions | Stage | Temperature | Time | Repeat Number |
| Pre- incubation | 94 C | 600s | 1 | |
| Denaturation | 94 C | 15s | 45 | |
| Annealing | 60 c | 30s | ||
| Extension | 72 C | 20 | ||
| Final Extension | 72 C | 600s | 1 | |
| HRM | - Equipment default- | −1 | ||
Summary Statistics of 156 eligible participants.
| Age | Gender | ||||
|---|---|---|---|---|---|
| Number (%) | <50 | ≥50 | Male | Female | |
| Colorectal Cancer | 9 (5.77) | 5 (55.55) | 4 (44.45) | 3 (33.33) | 6 (66.67) |
| Advanced Adenoma | 9 (5.77) | 3 (33.33) | 6 (66.67) | 3 (33.33) | 6 (66.67) |
| Normal | 138 (88.46) | 27 (19.57) | 111 (80.43) | 76 (55.07) | 62 (44.93) |
| Total | 156 | 35 (22.44) | 121 (77.56) | 82 (52.56) | 74 (47.44) |
Fig. 1Melting diagram of (A) KRAS gene, (B) BRAF gene.
Fig. 2Methylation diagram of (A) NDRG-4, (B) BMP-3 promoters.
Diagnostic Accuracy Analysis Results of Mt-sDNA, FIT, high sensitivity FOB Hb, and traditional FOB Guaiac test compared with Colonoscopy (as golden standard method).
| TP | Sensitivity % (95% CI) | Specificity % (95% CI) | ROC | LR + | LR - | PPV % | NPV % | ||
|---|---|---|---|---|---|---|---|---|---|
| Mt-sDNA test | CRC | 7 | 77.8 (40–97.2) | 91.2 (85.4–95.2) | 0.85 (0.69–0.99) | 8.79 (4.7–16.4) | 0.24 (0.07–0.83) | 35 (15.4–59.2) | 98.5 (94.8–99.8) |
| AA | 3 | 33.3 (7.49–70.1) | 88.4 (82.1–93.1) | 0.61 (0.44–0.77) | 2.88 (1.03–8.04) | 0.75 (0.47–1.2) | 15 (3.21–37.9) | 95.6 (90.6–98.4) | |
| Both (n = 18) | 10 | 55.6 (30.8–78.5) | 92.8 (87.1–96.5) | 0.74 (0.62–0.86) | 7.67 (3.71–15.8) | 0.48 (0.29–0.81) | 50 (27.2–72.8) | 94.1 (88.7–97.4) | |
| FIT | CRC (n = 9) | 6 | 66.7 (29.9–92.5) | 93.9 (88.7–97.2) | 0.80 (0.64–0.97) | 10.9 (4.97–23.8) | 0.36 (0.14–0.89) | 40 (16.3–67.7) | 97.9 (93.9–99.6) |
| AA (n = 9) | 2 | 22.2 (2.81–60) | 91.2 (85.4–95.2) | 0.57 (0.42–0.71) | 2.51 (0.67–9.48) | 0.85 (0.6–1.21) | 13.3 (1.66–40.5) | 95 (90–98) | |
| Both (n = 18) | 8 | 44.4 (21.5–69.2) | 94.9 (89.8–97.9) | 0.69 (0.58–0.82) | 8.76 (3.61–21.3) | 0.59 (0.39–0.89) | 53.3 (26.6–78.7) | 92.9 (87.3–96.5) | |
| FOB Hb | CRC (n = 9) | 6 | 66.7 (29.9–92.5) | 95.2 (90.4–98.1) | 0.81 (0.65–0.97) | 14 (5.94–33) | 0.35 (0.14–0.88) | 46.2 (19.2–74.9) | 97.9 (94–99.6) |
| AA (n = 9) | 2 | 22.2 (2.81–60) | 92.5 (87–96.2) | 0.57 (0.43–0.72) | 2.97 (0.77–11.4) | 0.84 (0.59–1.2) | 15.4 (1.92–45.4) | 95.1 (90.2–98) | |
| Both (n = 18) | 8 | 44.4 (21.5–69.2) | 96.4 (91.7–98.8) | 0.70 (0.59–0.82) | 12.3 (4.5–33.5) | 0.58 (0.38–0.87) | 61.5 (31.6–86.1) | 93 (87.5–96.6) | |
| FOB Guaiac | CRC (n = 9) | 5 | 55.6 (21.2–86.3) | 91.2 (85.4–95.2) | 0.73 (0.56–0.91) | 6.28 (2.88–13.7) | 0.49 (0.23–1.01) | 27.8 (9.69–53.5) | 97.1 (92.7–99.2) |
| AA (n = 9) | 3 | 33.3 (7.49–70.1) | 89.8 (83.7–94.2) | 0.62 (0.45–0.78) | 3.27 (1.15–9.25) | 0.74 (0.47–1.18) | 16.7 (3.58–41.4) | 95.7 (90.8–98.4) | |
| Both (n = 18) | 8 | 44.4 (21.5–69.2) | 92.8 (87.1–96.5) | 0.69 (0.57–0.81) | 6.13 (2.79–13.5) | 0.59 (0.39–0.91) | 44.4 (21.5–69.2) | 92.8 (87.1–96.5) | |
True Positive.
Positive Likelihood Ratio.
Negative Likelihood Ratio.
Positive Predictive Value.
Negative Predictive Value.
Colorectal Cancer.
Advanced Adenoma.
ROC, receiver operating characteristic.
Traditional guaiac-based fecal occult blood tests.
High sensitivity guaiac-based fecal occult blood tests.
Fig. 3ROC curves of diagnostic accuracy of Mt-sDNA panel and the FIT test for (A) CRC, (B) AA, and (C) combined CRC and AA (AUC, area under the receiver operating characteristic ROC).
Fig. 4ROC curves of the diagnostic accuracy of CRC, AA, and combined for (A) Mt-sDNA panel (B) FIT test (AUC, area under the receiver operating characteristic ROC).
Comparing Diagnostic Accuracy Results with the last published NCCN guideline for colorectal cancer screening.
| Sensitivity | Specificity | |||||
|---|---|---|---|---|---|---|
| Colorectal Cancer | Advanced Adenoma | |||||
| NCCN Guideline | Our Results | NCCN Guideline | Our Results | NCCN Guideline | Our Results | |
| high-sensitivity guaiac-based test | 62–79% | 66.7% | 7% | 22.2% | 87–96% | 96.4% |
| FIT | 76–95% | 66.7% | 27–47% | 22.2% | 89–96% | 94.9% |
| Mt-sDNA panel | 92% | 91.2% | 42% | 33.3% | 87% | 92.8% |