Literature DB >> 35298558

Study from microcosms and mesocosms reveals Escherichia coli removal in high rate algae ponds during domestic wastewater treatment is primarily caused by dark decay.

Paul Chambonniere1, John E Bronlund1, Benoit Guieysse1.   

Abstract

While high rate algal ponds (HRAPs) can provide efficient pathogen removal from wastewater, the mechanisms involved remain unclear. To address this knowledge gap, the mechanisms potentially causing Escherichia coli (E. coli) removal during microalgae-based wastewater treatment were successively assessed using laboratory microcosms designed to isolate known mechanisms, and bench scale assays performed in real HRAP broth. During laboratory assays, E. coli decay was only significantly increased by alkaline pH (above temperature-dependent thresholds) due to pH induced toxicity, and direct sunlight exposure via UV-B damage and/or endogenous photo-oxidation. Bench assays confirmed alkaline pH toxicity caused significant decay but sunlight-mediated decay was not significant, likely due to light attenuation in the HRAP broth. Bench assays also evidenced the existence of uncharacterized 'dark' decay mechanism(s) not observed in laboratory microcosms. To numerically evaluate the contribution of each mechanism and the uncertainty associated, E. coli decay was modelled assuming dark decay, alkaline pH induced toxicity, and direct sunlight-mediated decay were independent mechanisms. The simulations confirmed E. coli decay was mainly caused by dark decay during bench assays (48.2-89.5% estimated contribution to overall decay at the 95% confidence level), followed by alkaline-pH induced toxicity (8.3-46.5%), and sunlight-mediated decay (0.0-21.9%).

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Year:  2022        PMID: 35298558      PMCID: PMC8929646          DOI: 10.1371/journal.pone.0265576

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


1. Introduction

High rate algal ponds (HRAPs) are shallow raceway ponds that support efficient removal of organic carbon and nutrients during wastewater treatment. Few studies have shown HRAPs also support pathogen removal [1-3] at levels comparable to the efficiency achieved in maturation ponds, a well-established technology for wastewater disinfection [4-6]. Recent studies have confirmed this capacity at full-scale [7-9]. Various mechanisms drive pathogen removal in maturation ponds. Dark mechanisms include heat inactivation, sedimentation, predation, starvation/competition with other microorganisms, and the toxicity caused by dissolved oxygen (DO), pH, and algal toxins [10,11]. Davies-Colley et al. (1999) [12] proposed that three sunlight-mediated mechanisms are the main drivers of pathogen removal in these systems, namely 1) direct absorption of solar UV-B by DNA resulting in DNA damage; 2) photo-oxidation of key cellular biomolecules by reactive oxygen species (ROS) generated by endogenous photosensitizers reacting with UV light; and 3) photo-oxidation of key cellular biomolecules by ROS generated by exogenous photosensitizers. While the relative occurrence and significance of sunlight-mediated and dark removal mechanisms are currently unknown in HRAPs, sunlight-mediated mechanisms are expected to drive the bulk of pathogen removal based on studies in pilot scale systems [2,13]. However, Bahlaoui et al. (1998) [2] compared two HRAPs operated in parallel and found solar radiation was only significant in the HRAP operated at a constant hydraulic retention time. At full scale, Young et al. (2016) [8] found no relationship between F-RNA bacteriophage inactivation and solar radiation or water temperature, two parameters associated with this indicator inactivation in maturation ponds [14]. These authors also found no correlation between Escherichia coli (E. coli) removal and any of the parameters monitored. These results disagree with findings from maturation ponds, thus suggesting prevalent pathogen removal mechanisms may differ between HRAP and maturation ponds. Critically, the rapid and large temporal variability of key parameters experienced during pilot and full scale operations (e.g. influent flow and composition, temperature, incident sunlight intensity) impedes the determination of the mechanisms potentially involved, especially considering the different time scales involved. These observations motivated the present study focusing on the removal of E. coli, the most commonly used indicator of wastewater disinfection [15], in HRAPs. To combine a deterministic laboratory scale approach with the representativeness of in situ investigations, this study was performed in three steps: Laboratory assays (approx. 0.1 L) were first used to evaluate the potential magnitude of individual removal mechanisms under conditions representative of HRAP; Bench assays (approx. 5 L) in HRAP liquid cultures including micro-organisms (henceforth referred to as HRAP broth for simplicity) were used to verify the relevance of laboratory observations under experimental conditions representative of real HRAP systems, while still enabling some control of broth conditions. Due to large experimental uncertainty associated with microbial monitoring, the relative contributions and associated confidence intervals of the mechanisms identified in steps 1) and 2) were computed using a model based approach.

2. Materials and methods

2.1.Laboratory assays

Experiments investigating ‘dark mechanisms’ were conducted indoor under darkness in 150 mL E-flasks covered with foil, and experiments investigating ‘light-mediated mechanisms’ were conducted outdoor in opened 100 mL beaker. Sunlight experiments were performed on cloudless days to minimize the impact of sunlight variability caused by clouds. All E-flasks and beakers were autoclaved to minimize contamination interference, filled with 50 mL of autoclaved medium (unless otherwise notified) and aseptically inoculated with a wildtype E. coli strain to achieve an initial cell count between 2.0∙107 and 2.0∙108 CFU·mL-1. This strain was isolated from a pilot HRAP treating primary wastewater at Palmerston North wastewater treatment plant, New Zealand (Chambonniere et al. 2020 [16], see S1 Appendix). Following inoculation, the cultures were continuously agitated using a KS 260 control orbital shaker (IKA, Germany) at 200 rpm and incubated under specific conditions. Based on relevant literature [10], “natural decay” (starvation and heat inactivation), algal metabolite toxicity, wastewater toxicity, ammonia toxicity, alkaline-pH induced toxicity, sunlight direct damage (combining direct DNA damage and endogenous photo-oxidation), and exogenous photo-oxidation were investigated as potential E. coli decay mechanisms. The specific conditions used for each investigation are given in Table 1 with further details given in S2 Appendix. Predation was not investigated for practical reasons.
Table 1

Summary of the conditions tested during laboratory assays.

Mechanism targetedExperimental matrixChemical addition (Level)Control of temperature (Range)Indoor/OutdoorDuration (Range)
Starvation and heat inactivation Reverse osmosis waterNoneYes(5–35°C)Indoor2 hr—7 d1
Toxicity of algal metabolites Filtrated HRAP brothNoneNoIndoor1 d -7d
Wastewater toxicity Filtrated wastewaterCentrifuged wastewaterNoneNoIndoor2 d - 7d
Ammonia toxicity Reverse osmosis waterpH buffer(pH 7–10)NH4Cl(0.5–50 mg·L-1)Yes(10–35°C)Indoor2 hr (35°C)– 7 hr (10°C)
Alkaline induced pH-toxicity Reverse osmosis waterpH buffer(pH 7–11)Yes(5–35°C)Indoor0.2 hr (35°C, pH 11)– 2 d (5°C)
Direct sunlight damage Reverse osmosis waterNonepH buffer(pH 7 & 10)NoOutdoor20 min—4 hr
Exogenous photo-oxidation Filtrated wastewaterFiltrated HRAP brothNonepH buffer(pH 7 & 10)NoOutdoor20 min—2 hr
Predation Not investigated in the present study

1 The duration varied since these conditions were used as controls for other experiments.

1 The duration varied since these conditions were used as controls for other experiments.

Laboratory analysis

Microbial counting was conducted using the pour-plate method [17]. The measurement uncertainty associated with log-transformed E. coli cell counts was estimated to be 4% (relative standard error, S3 Appendix). Temperature and pH were recorded using an Orion Star A326 multiprobe meter (Thermofisher, USA). Sunlight intensity data (10 minutes interval) was obtained from the National Institute of Water and Atmospheric Research Ltd database (Palmerston North, location agent number 21963).

2.2.Bench assays

Bench assays were developed to verify in real HRAP broth the significance of mechanisms demonstrated to impact E. coli survival during laboratory assays. Since pH toxicity and sunlight mediated mechanisms were the only mechanisms causing significant E. coli removal during laboratory assays (see Results and Discussion section), the bench assays were designed to focus on the parameters known to impact these mechanisms i.e. sunlight exposition, pH, and DO concentration (temperature could not be controlled). E. coli survival was therefore monitored under various combinations of 1) high or low pH, 2) high or low DO concentration, and 3) under sunlight radiation or in the dark. For this purpose, two cylindrical reactors (25 cm deep, 14 and 16 cm diameters, 3.8 and 5.0 L working volumes) were set-up on the laboratory rooftop. The sides of the reactors were covered with opaque tape up to the 25 cm mark so that sunlight could reach the algae only from the liquid surface. The reactors were mixed using a vertical propeller (RW20 Janke & Kunkel, IKA, Germany) enabling water homogenization within 20 seconds based on visual colorimetric tests. The reactors were also equipped with an air bubbler (flat spiral coil) to control DO concentration. Bench assays were conducted in broth collected from a pilot scale HRAP treating primary domestic wastewater located in Palmerston North, New Zealand having median broth total organic carbon, dissolved organic carbon, nitrate, ammonia, E. coli cell count levels of 94.2 mg·L-1, 19.8 mg·L-1, 51.5 mg·L-1, 0.52 mg N·L-1, and 1.48·105 MPN·100 mL-1, respectively (set-up and operation fully described in [16]). Prior monitoring showed Scenedesmus spp. was the dominant species in the HRAP (unpublished data) but this was not verified during bench assays. Various conditions of DO concentration (> 10 mg·L-1 or < 2 mg·L-1), pH (> 9.4 or < 8) were tested under natural sunlight exposure or in darkness. When DO concentration and pH were not left to increase naturally due to photosynthetic activity, DO concentration was reduced below 2 mg·L-1 by bubbling N2 gas through the air bubbler. In this case, the propeller was removed as gas bubbling also enabled reactor mixing. When needed, pH was kept neutral (< 8) by adding 0.1 M HCl.

Assay preparation, sampling, and analysis

On the day of each experiment (four days in total, all carried out in November 2017), HRAP broth was collected prior to 11 A.M. and immediately transported to the laboratory. Within 1 hour of collection, the two bench scale reactors were filled up with the HRAP broth to the 25 cm depth mark and inoculated with 2 mL of wild type E. coli suspension (S1 Appendix) to obtain a consistent initial E. coli cell count representative of levels typically reported in HRAP [16]. This inoculation time was considered as the start of the first bench assay, during which the reactors were exposed to sunlight for 2 hr (first light assay). The reactors were re-inoculated with 2 mL of wildtype E. coli suspension and exposed again to sunlight for 2 hr (second light assay). Following these two light assays, the reactors were re-inoculated with 2 mL of wildtype E. coli suspension, covered with cardboard, and incubated in darkness for another 2 hr (dark assay). An aliquot (< 3 mL) was collected from each reactor immediately following the addition of E. coli stock culture (time zero). The reactors were sampled every 30 minutes and E. coli cell count was quantified immediately following sample collection using the Quantitray® Colilert®-18 in accordance with the manufacturer instructions (IDEXX Laboratories, USA). Temperature, pH, and DO concentration were continuously logged at one minute intervals using an Orion Star A326 multiprobe meter (Thermofisher). Light attenuation coefficients were calculated from the measurement of HRAP broth transmittance for the wavelength 683 nm (PG Instrument Ltd UV/VIS Spectrophotmeter, T60) performed on each day bench assays were performed.

2.3.E. coli decay expression

In well-mixed batch reactors as operated during laboratory and bench scale experiments, the experimental rate of E. coli decay (k, d-1) was computed from experimental data assuming first order kinetics [13,18,19] as: Where C(t) represents E. coli cell count in the vessel (see S4 Appendix for further discussion). To quantify the removal efficiency of E. coli decay over a certain duration, the E. coli log10 removal was computed as , where C0 and C are the initial and final E. coli cell count for the duration considered [20]. Determination and uncertainty during laboratory assays of thus determined E. coli decay rate are further detailed in S4 Appendix.

2.4.E. coli decay modelling

E. coli decay was mathematically modelled to quantify the relative contribution of mechanisms experimentally identified to cause significant E. coli removal. The model was used to estimate the confidence intervals associated with mechanism relative contributions. E. coli decay was first modelled and parameterized based on results from laboratory assays. Changes in E. coli cell count during bench assays were then computed by calculating E. coli decay rate for every minute of the experiments (assuming the sunlight intensity was constant over 10-minute periods) using the Euler method [21] with a 1-minute time step from the first measured cell count, and assuming E. coli decay follows pseudo-first order kinetics. Algal broths were assumed to be well-mixed and shading from the mixer was neglected. Kinetic parameters of E. coli decay rate were corrected by fitting E. coli cell counts calculated for bench assays to the experimental dataset (kinetic parameters of E. coli decay rate are referred to as “fitted parameters” in the following). Model development, calibration, and fitting are described in the Results and Discussion section. The uncertainty associated with the fitted parameters was assessed using Monte Carlo simulations [22]. For this purpose, experimental inputs associated with significant uncertainty were randomly varied within their range of uncertainty assuming normal or log-normal distribution (Table S5-1 in S5 Appendix) and new values for fitted parameters were each time computed. This operation was repeated 1,000 times (S5 Appendix). The relative contribution of each mechanism to the overall E. coli decay and the confidence intervals associated with these relative contributions were assessed again using Monte Carlo simulations (S6 Appendix). Briefly, experimental measurements and fitted model parameters were randomly varied within their 95% confidence intervals and the relative contributions of the mechanisms studied (i.e. ratio between the number of cells decayed through a given mechanism over the total number of cells decayed during bench assays) were computed each time. This calculation was repeated 2,000 times.

2.5.Numerical and statistical analysis

All numerical and statistical analyses were performed using Matlab® R2019a (Mathworks Inc., Natick, MA, USA). Matlab® code files used to generate the results of this study can be found in the repository [23].

3. Results and discussion

3.1.Laboratory assays

3.1.1. Laboratory assays in darkness

Starvation and heat inactivatio. No significant reduction in E. coli viable cell counts (henceforth referred to as “decay” for simplicity) was recorded in darkness, in the absence of known harmful conditions, and at temperature up to 35°C (S7 Appendix). E. coli ‘natural death’ was therefore insignificant under the conditions tested, which confirms findings from Cook and Bolster (2007) [24] who reported a high E. coli survival in natural water (decay rate of 0.04 d-1 over 400 days). E. coli optimally grows at 37.5°C, the temperature of the human gut, and tolerates temperatures up to 48°C [25]. As temperatures above 35°C have hitherto not been reported during HRAP operations, starvation and heat inactivation are unlikely to be relevant to E. coli removal in full-scale HRAPs. While E. coli re-growth has been reported in some systems, particularly in warm tropical ponds [26], no significant increase of E. coli cell count was noticed during this study even at the warmest temperature tested (Fig S7-2 in S7 Appendix). Caution is therefore mandated before ruling out the possibility of regrowth, for E. coli or other indicators, depending on the conditions experienced. Algal-metabolite and wastewater toxicity. Despite previous evidence that several microalgae can excrete a wide array of antibacterial compounds harmful to E. coli [27], E. coli decay was insignificant in flasks filled with algal filtrates. Algae-based toxicity was therefore unlikely significant under the conditions tested. This finding cannot be broadly extrapolated in view of the geographical and temporal variability in algal diversity found in HRAPs [28] and the diverse bactericidal compounds each species may be secreting [27,29]. E. coli decay was also insignificant in flasks supplied with filtered wastewater. Wastewater toxicity was therefore excluded as significant decay mechanism under the conditions tested. Ammonia toxicity. No significant decay was recorded when NH4+ was supplied, even at pH 10 and concentration up to 50 mg·L-1 (S8 Appendix). Considering the low NH4+/NH3 concentration typically found in HRAP broths (generally ≤ 2 mg N-NH4+·L-1 [30]), NH3 toxicity is not expected to cause significant E. coli decay in HRAPs treating domestic wastewater. This is important as NH3 has been suggested as a potential disinfectant in algal ponds [31,32] but direct evidence has to date been lacking. Alkaline-pH induced toxicity. E. coli decay increased with pH, and this increase was temperature-dependent (S9 Appendix). E. coli pseudo-first order decay rate thus reached 67.5 ± 19.2 d-1 at pH 10 and 30°C (N = 8), which is significantly higher than the typical decay rates < 6 d-1 at 20°C in facultative and maturation ponds [32]. This discrepancy may be due to the fact that maturation ponds are characterized by lower pH conditions than HRAPs [33]. Because pH > 10 and temperatures > 25°C can be experienced in HRAPs [34,35], alkaline-pH induced toxicity may indeed be significant in these systems. Such heightened decay rates agrees with findings from Parhad and Rao (1974) [36] who reported enhanced E. coli decay at pH > 9.4 in algal systems. The exponential impact of pH on E. coli decay at constant temperature was described in a pseudo first order decay rate as: where C(t) is E. coli cell count in a laboratory assay reactor (CFU·mL-1), T is the broth temperature T (°C), pH is the broth pH, and a(T) is a temperature-dependent fitting parameter. The values of a(T) were obtained as the slopes of the linear regressions of the decay rates against 10 at each temperature tested. The values of a(T) were found to linearly increase with temperature when log-transformed (R2 = 0.972, N = 6, Fig S9-3 in S9 Appendix), meaning the influence of temperature on E. coli decay rate at a given pH (i.e. a(T)) could be described by an Arrhenius equation [37] leading to the following final equation for pH induced toxicity to E. coli: where θ is the temperature-compensation coefficient for alkaline-pH induced toxicity and is E. coli decay rate at 20˚C and pH 14. This temperature-dependent relationship can be explained by the hypothesis formulated by Mendonca et al. (1994) [38] that the effect of alkaline pH to E. coli is due to the solubilisation of membrane proteins or the saponification membrane lipids, two reactions which temperature-dependence have been modelled using the Arrhenius equation [39,40]. The numerical values of θ (1.14) and (1.49·105 d-1) were determined from the linear regression of ln(a) with T. As can be seen in Fig 1, Eq 3 satisfyingly fitted experimental data (coefficient of determination between measured and predicted data = 0.914, N = 81). Because of the very fast decay occurring at pH above 10.5, only a few experiments performed under these conditions yielded measurable results, and the values obtained suffered from high uncertainty, particularly at higher temperature (e.g. only two values of decay rate could be calculated at pH > 10.5 at 35°C: 1212 and 1713 d-1; not shown in Fig 1). Consequently, Eq 3 was calibrated excluding such data and may not accurately predict E. coli decay at pH > 10.5.
Fig 1

Measured versus fitted E. coli decay rates for all tested pH between 6.5 and 10.5 and temperatures between 5 and 35°C in laboratory assays.

The 45° line shows equality between measured and predicted data. Error bars show the standard error of linear regression performed.

Measured versus fitted E. coli decay rates for all tested pH between 6.5 and 10.5 and temperatures between 5 and 35°C in laboratory assays.

The 45° line shows equality between measured and predicted data. Error bars show the standard error of linear regression performed.

3.1.2. Laboratory assays under natural sunlight

Sunlight irradiation. In open beakers exposed to sunlight at neutral pH, E. coli log10 removal was linearly correlated with sunlight dose without intercept (0.314 ± 0.0212 m2·MJ-1, R2 = 0.920, N = 20, p = 6.84·10−12, Fig 2). This correlation yields a relationship between E. coli cell count rate ((), CFU·mL-1) and incident sunlight intensity (, W·m-2) that can be expressed as:
Fig 2

Effect of sunlight dose on E. coli log10 removal at neutral pH during laboratory assays.

The straight line represents the linear regression with null intercept peformed over the dataset (slope converted to the sunlight specific first order decay rate of 0.0624 m2∙W-1∙d-1 by multiplying by the factor . An outlier confirmed by Grubb’s test on the residuals from linear regression was removed from the analysis. Error bars show measurement standard error.

Effect of sunlight dose on E. coli log10 removal at neutral pH during laboratory assays.

The straight line represents the linear regression with null intercept peformed over the dataset (slope converted to the sunlight specific first order decay rate of 0.0624 m2∙W-1∙d-1 by multiplying by the factor . An outlier confirmed by Grubb’s test on the residuals from linear regression was removed from the analysis. Error bars show measurement standard error. Where α is the sunlight specific decay rate due to direct sunlight damage (6.24·10−2 ± 4.2·10−3 m2∙W-1∙d-1). The sunlight specific decay rate due to direct sunlight damage predicted in the present study is challenging to compare to existing studies using different experimental conditions (e.g. strain as shown in S10 Appendix, experimental broth matrix, radiation wavelength) and/or because the inputs needed to calculate the sunlight dose and the log10 removal (or alternatively, sunlight intensity and first order decay rates) are not always provided in the literature. Nevertheless, Maraccini et al. (2016a) [41] determined a sunlight specific decay rate of 7.01 m2·W-1·d-1 for E. coli exposed to UV-B in natural waters. Assuming UV-B accounts for 5% of the total UV radiation reaching the Earth surface and UV radiation accounts for approx. 5% of the total solar spectrum [42], this translates to a sunlight specific decay rate of 1.75·10−2 m2∙W-1∙d-1 which is in the order of magnitude predicted in the present study. Curtis et al. (1992b) [43] reported a sunlight specific decay rate of 1.07·10−2 m2·W-1·d-1 (assuming pH and DO concentration are constant) for faecal coliforms incubated in filtrated algae pond water. This value is again in the order of magnitude of the rate herein reported for E. coli in reverse osmosis water. A direct comparison of the rate values is however difficult given the different microbial indicator used. Influence of pH. In agreement with Davies-Colley et al. (1999) [12], E. coli decay under sunlight was significantly enhanced at high pH (S11 Appendix). It was however not possible to determine if the high pH contributed to additional E. coli removal, or if it synergistically enhanced sunlight-mediated removal. E. coli decay rates under sunlight at alkaline pH observed were higher than hitherto reported [31,44] which may be explained by the higher pH and temperature used in the present work compared to these past studies. Impact of photosensitizers. Decay rates recorded in reverse osmosis water did not statistically differ from decay rates recorded in wastewater or HRAP filtrates (one-tailed paired two-sample t-test at the 5% significance level, N = 9, p = 0.584, S12 Appendix). Overall, these tests suggest E. coli decay under sunlight is not significantly improved by the probable presence of photosensitizers under the conditions tested. Therefore, and despite the potential existence of a shoulder lag-period before exogenous photo-oxidation would become significant [18,45,46], this mechanism was unlikely significant for E. coli in HRAP (S12 Appendix). It is possible that instead (or in spite) of leading to the creation of ROS species, dissolved substances in the HRAP filtrates were absorbing sunlight and thereby reduced sunlight-mediated damage to E. coli cells (the sunlight absorption spectra of the filtrates were not recorded during the experiments but an example of absorption spectrum for wastewater and HRAP filtrates can be found in S12 Appendix). Regardless, our finding agrees with the conclusion of Maraccini et al. (2016b) [46] who found gram-negative bacteria such as Salmonella enterica, E. coli K-12, and E. coli O157:H7 had a high resistance to exogenous photo-oxidation in presence of naturally occurring organic photosensitizers. The specific impact of dissolved oxygen (DO) concentration on sunlight-mediated removal could not be practically investigated in laboratory assays due to technical difficulties in reaching HRAP supersaturated DO levels (up to 300% of the atmospheric saturation values [34]) under aseptic conditions. The addition of known photosensitizers was not tested as this manipulation would at best only verify that these known chemicals generate radicals enhancing E. coli removal, without evidencing that the mechanism is indeed taking place in the absence of the added chemicals.

3.2.Bench assays

Four bench scale experiments were conducted in HRAP broth. Each experiment was duplicated (Reactors A and B) and included a series of three sub-experiments conducted under various conditions of light, pH and DO concentration (Table 2). To confirm the potential significance of alkaline pH induced toxicity and photo-oxidation, E. coli log10 removal after each sub-experimental phase were analysed against the total sunlight dose received (MJ·m-2), and the averaged pH, DO, and temperature recorded. A complementary analysis based on E. coli decay rates (d-1) is provided in S13 Appendix.
Table 2

Results from bench experiments by experiment.

AssayTemperature (°C)DO (mg·L-1)pHLight Dose (MJ·m-2)Time IntervalE. coli log10 removal 1
 ReactorReactor ReactorReactor
Experiment Test ABABABAB
Experiment 1 125.525.4171.59.69.54.951:501.481.24
[1.15–1.80][0.95–1.57]
23027.7231.310.410.53.061:302.771.34
[2.40–3.18][1.19–1.47]
33128.2200.4010.710.801:053.011.97
[2.24–2.98][1.29–2.03]
Experiment 2 124.322.9221.27.37.55.641:551.091.32
[0.77–1.40][0.95–1.70]
228.627.3310.807.46.94.911:501.751.28
[1.37–2.12][0.94–1.60]
331.129.6240.506.37.601:401.611.23
[1.26–2.01][0.85–1.60]
Experiment 3 127.726.9241510.47.36.952:002.471.61
[2.07–2.88][1.26–1.97]
23231.7282311.26.95.971:502.831.59
[2.44–3.24][1.18–2.06]
33433.8202410.97.000:452> 2.6121.22
[0.85–1.65]
Experiment 4 131.330.3242110.37.27.152:003.661.24
[2.94–4.63][0.93–1.55]
236.636.8252610.47.12.840:502> 4.0520.59
[0.19–1.00]
339.638.3182510.46.300:003>>3>>3

1 The values in bracket show the 95% confidence interval calculated based on the Quanti-Tray MPN table uncertainty.

2 No live E. coli cells were found in the second sample withdrawn at the dilution tested. A minimal log removal was calculated based on the first cell count measured and the analytical detection limit of Quanti-Tray countings.

3 No E. coli were found in the first sample (i.e. within 10 minutes following the cells suspension in the algal broth) so no removal efficiency could be measured (log removal > 4 within minutes can be inferred from these measurements).

1 The values in bracket show the 95% confidence interval calculated based on the Quanti-Tray MPN table uncertainty. 2 No live E. coli cells were found in the second sample withdrawn at the dilution tested. A minimal log removal was calculated based on the first cell count measured and the analytical detection limit of Quanti-Tray countings. 3 No E. coli were found in the first sample (i.e. within 10 minutes following the cells suspension in the algal broth) so no removal efficiency could be measured (log removal > 4 within minutes can be inferred from these measurements).

E. coli decay in the dark

At neutral pH, E. coli log10 removal values were similar in darkness and under sunlight during Experiment 2, but higher in darkness during Experiments 1 and 3. This similarity suggests that mechanisms causing decay under darkness were also responsible for E. coli removal under sunlight. During Experiment 4, E. coli cells introduced into the HRAP broth were inactivated within minutes in darkness at neutral pH and high DO concentration. As these very high decay rates were recorded in the absence of any of the harmful conditions identified during laboratory scale experiments, these results further evidence that previously undetected dark removal mechanisms drove E. coli decay in real algal broth.

Impact of sunlight exposure

During laboratory assays in clear medium, only sunlight was found to influence E. coli survival at neutral pH. Yet, in bench assay conducted in algal broth, similar E. coli log10 removal values were observed in the dark and under sunlight (e.g. Reactor B, Experiment 2). Assuming the removal efficiency of dark mechanisms is not negatively impacted by light exposure, the similar removals reported during dark and illuminated bench assays suggests that sunlight mediated decay mechanisms had little impact on E. coli decay in the full algal broth. The analysis of E. coli decay rate also confirmed this conclusion (S13 Appendix).

Impact of DO concentration

While DO concentration had no apparent impact on E. coli decay at neutral pH (Experiment 2), high DO concentrations were associated with improved E. coli decay at high pH (Experiment 1). Critically, these differences (or lack of) were reported regardless of if the flasks were exposed to light or incubated in darkness, which disagrees with past literature showing DO concentration impacts E. coli via the formation of ROS (reactive oxygen species) under sunlight radiation but does not impact E. coli survival in the dark [31,44]. Light-mediated ROS formation should have therefore enhanced E. coli decay only under light exposure and this effect should have been see in both Experiments 1 and 2 under sunlight, as opposed to the present observations showing no impact of light, but an interplay between the impacts of pH and DO concentration (Experiment 1 versus 2). The positive impact of DO concentration at high pH (Experiment 1) was instead likely due to the higher temperatures experienced in Reactor A than Reactor B. Indeed, Reactor A was slightly smaller than Reactor B, meaning higher temperatures were typically experienced in Reactor A (high DO) than in Reactor B (low DO). Since alkaline pH-induced toxicity to E. coli is sensitive to temperature (as evidenced during laboratory assays), temperature likely enhanced alkaline pH-induced toxicity more in Reactor A than in Reactor B during Experiment 1 conducted at high pH. This positive impact of temperature on alkaline pH-induced toxicity was logically not significant during Experiment 2 conducted at neutral pH. DO concentration is therefore concluded to have no significant impact on E. coli removal under the conditions studied.

Impact of pH

During Experiment 3, E. coli removal under sunlight was significantly faster at pH 10.4–10.8 than at neutral pH, and E. coli removal in darkness was significantly faster at pH 10.9 than at neutral pH. These results confirmed laboratory findings that alkaline pH induced toxicity is a significant contributor to E. coli decay. Statistical analysis of the decay rate dataset also showed with high confidence that pH had a positive impact on E. coli decay (S13 Appendix). In comparison with results from laboratory assays, bench assays confirmed that E. coli decay was enhanced by elevated pH but evidenced that sunlight-mediated decay had limited impact in HRAP broth. The low impact of sunlight on E. coli during bench assays was likely caused by a high light attenuation in the HRAP broths (light attenuation coefficients in the range 55–70 m-1 at 683 nm). This attenuation was itself caused by the presence of pigmented algae cells and light attenuation can be expected to be even stronger for the UV radiation known to be lethal to E. coli [13] than for visible wavelength such as 683 nm [47]. The elevated E. coli decay recorded during bench assays at neutral pH, both in the dark and under sunlight, was therefore likely caused by dark mechanisms. Since such dark mechanisms went undetected during laboratory assays, the use of real HRAP broth could have induced conditions causing microalgae to release antibiotics during bench assays. For example, the presence of competitive organisms, high DO levels, osmotic stress, and UV exposure (HRAP broth was exposed to sunlight 4 hours before being placed in darkness) have all been reported to generate stresses that can cause microalgae to secrete bactericidal compounds [48]. The possible impact of predation could not be practically assessed in our study but this mechanism has been reported to have a major effect on bacterial removal in waste stabilization ponds [10] and could have explained the unexpectedly high decay recorded in the dark during bench assays.

3.3.Model development from bench assays

There was no clear evidence that alkaline-pH induced toxicity and sunlight-mediated decay were interacting during laboratory assays (S11 Appendix). Consequently, the total E. coli decay rate from bench microcosms was first computed as the sum of the alkaline-pH induced toxicity (Eq 3) and sunlight-mediated decay (Eq 4 modified to account for light attenuation from suspended solids found in HRAPs, S14 Appendix), using their expressions as established and parameterized from the laboratory data. This model performed poorly against bench data (R2 = -2.55, N = 54), which was not surprising because bench assays evidenced significant dark decay mechanisms and low impact of sunlight thereby evidencing the lack of representativeness of laboratory assays. Since bench assay evidenced dark decay was significant, a mechanisms that is likely temperature-dependent, the decay model was modified by adding an Arrhenius expression for dark decay rate as commonly done for bacteria removal in maturation ponds [37,49,50]. The laboratory-based model also overestimated E. coli decay at elevated pH, suggesting alkaline-pH induced toxicity was overestimated. Because microbial communities form biofilms that protect them against various adverse factors [51], including moderate pH [52-54], the presence of solids and other microbial species in the HRAP microcosms likely protected E. coli from alkaline-pH induced toxicity during bench assays. To account for this effect, the relevant pH-model parameters were recalibrated against bench data as described below. Following these modifications, E. coli cell count in bench reactors (C) was computed as: where is E. coli dark decay coefficient at 20°C, θ is the temperature compensation coefficient for dark decay, d is the water column depth (m), and σ the light extinction coefficient of the algal broth (m-1). Values (and associated uncertainties) of the experimentally measured parameters (C, pH, T, Hs, d and σ) are summarized in Table S5-1 in S5 Appendix. The values of the fitted parameters , and α were computed by fitting the model outputs against specific subsets of bench data focusing on specific removal mechanisms. The model was initialized by implementing parameter values derived from laboratory data (i.e. d-1, θ = 1.14, d-1, θ = 1, α = 0.0624 m2·W-1·d-1) and a fitting algorithm was performed following these successive computation steps: The values of and θ were computed by minimizing the sum of squared residuals on the neutral pH data subset when varying and θ (all other parameters being kept constant); The values of and θ were computed by minimizing the sum of squared residuals on the elevated pH data subset when varying and θ (all other parameters being kept constant); The value of α was computed by minimizing the sum of squared residuals over the entire data set when varying α (all other parameters being kept constant). This algorithm was repeated until all fitted parameters did not vary relatively by more than 1%. The values thus obtained for fitted parameters are shown in Table 3 (labelled as ‘best fit’). The average relative error over full bench data set corresponding to the best fit parameters was 6.0% (R2 = 0.812, N = 54, Fig 3). As can be seen, Eq 5 henceforth calibrated could reproduce E. coli cell counts during bench experiments in HRAP broth with good accuracy. Further calibration using tests performed in HRAP broth collected at other times of the year (e.g. winter) and independent validation in a real HRAP are still needed before the model can be used to predict HRAP disinfection performance.
Table 3

Model parameters uncertainty estimated by Monte Carlo analysis.

Parameterk20dark(d-1)θdark(-)k20pH(d-1)θpH(-)α(m2·W-1·d-1)
Best fit 47.41.002.86·1031.450
Median 39.61.003.40·1031.420
Average 37.61.027.72·1031.391.13·10−1
5 Percentile 9.981.002.22·1031.190
95 Percentile 58.41.102.58·1041.494.91·10−1
Laboratory assays 01.001.49·1051.146.24·10−2
Fig 3

Measured vs. computed E. coli cell counts during bench assays using ‘best-fit’ model parameters (R2 = 0.812, N = 54).

Error bars show 20% uncertainty on measured E. coli cell counts.

Measured vs. computed E. coli cell counts during bench assays using ‘best-fit’ model parameters (R2 = 0.812, N = 54).

Error bars show 20% uncertainty on measured E. coli cell counts. A Monte-Carlo analysis was carried out to determine the impact of uncertainties in the data used during model parameterization (Table S5-1 in S5 Appendix) on the computation of , and α (i.e. the fitted parameters). Because the distributions of fitted model parameters were not necessarily normal (Fig S5-1 in S5 Appendix and S6-2 in S6 Appendix), median, mean, 5, and 95 percentiles of the data calculated are shown (Table 3). As can be seen, large uncertainty is associated with the parameterization of the model and an additional sensitivity analysis (S15 Appendix) showed that this uncertainty was primarily caused by E. coli cell counts measurement uncertainty (inherent to Quantitray® Colilert®-18 method).

3.4.Mechanistic implications

The data shown in Table 3 suggest uncharacterized dark decay was not impacted by temperature (θ = 1 for best fit) within the temperature range tested (19.9–38.1°C), though θ uncertainty range includes values up to 1.10 underlining that high temperature dependence for this mechanism is possible. A broader range of temperature should be tested to refine this finding. Alkaline-pH induced toxicity was confirmed to be less effective during bench assays than during laboratory assays (significant decrease of ), but was more sensitive to temperature (significant increase of θ). Critically, sunlight-mediated decay has no predicted impact on E. coli removal as the model best fit was obtained when the value of α was null. The relative contribution (%) of each single E. coli decay mechanism to overall E. coli removal during bench assays was further assessed using Monte-Carlo analysis to account for the impact of uncertainties due to experimental error (Table S5-1 in S5 Appendix) and parameterization uncertainty (Table 3). Based on the 5–95 percentiles of the values thus calculated (Fig 4), uncharacterized dark decay was found to account for 48–89% of the overall E. coli decay during bench assays, against 8–46% for alkaline-pH induced toxicity, and 0–22% for sunlight-mediated removal. This analysis therefore showed with strong confidence that direct sunlight damage contributed little to E. coli removal during bench assays, while uncharacterized dark decay was likely the main contributor. This finding is critical because sunlight is commonly viewed as the main factor of pathogen removal during wastewater treatment in HRAPs [13,55].
Fig 4

Relative contributions of removal mechanisms contributing to E. coli decay during bench assays.

Boxplots represent the 5, 25, 50, 75, and 95 percentiles of the distributions, and red dots the outlying data (N = 1322).

Relative contributions of removal mechanisms contributing to E. coli decay during bench assays.

Boxplots represent the 5, 25, 50, 75, and 95 percentiles of the distributions, and red dots the outlying data (N = 1322). Further research is critically needed to better understand the uncharacterized dark mechanisms involved, as this knowledge may provide the foundation for significantly improving HRAP design and operation for pathogen removal. The specific mechanisms causing E. coli removal under darkness were not identified during this study. Because predation (e.g. from protozoa or coliphages) has been reported as a main mechanism of bacterial decay in the dark [10], investigating this dark mechanism in the context of HRAP is of utmost interest, especially considering the predominance of dark decay herein reported. A significant contribution to overall dark decay from bactericidal compounds produced by microalgae cannot be ruled out although it was never observed in specific laboratory assays. It is also critical to consider the findings from this study may not apply to HRAPs operated under significantly different conditions (e.g. different climates, pH control through CO2 addition, [56]) and/or hosting different microalgae ecology (e.g. influencing pH variations [57], potentially generating toxic metabolites [48]) or, especially, to different pathogens or indicators than E. coli. For instance, gram-positive indicators were found to better resist alkaline-pH induced toxicity likely due to differences in the cell membrane structure [38], while gram positive bacteria were on the contrary reported to be more susceptible to exogenous photo-oxidation facilitated by naturally occurring organic photosensitizers [46]. Similar studies should therefore be carried out to investigate the removal of different indicators during HRAP based wastewater treatment.

4. Conclusions

The present study showed with high confidence that dark mechanisms caused most (48–89%) of E. coli decay in HRAP mesocosms while sunlight mediated mechanisms only caused a negligible to limited removal (0–22%). Alkaline-pH induced toxicity was the only other significant E. coli decay mechanism identified, causing 8–46% of total decay. The exact underlying mechanisms of E. coli decay in the dark were not identified, and further research to characterize dark decay in HRAP is critically needed as it could be the foundation for significant improvement of HRAP disinfection performance. Finally, while some conditions reported to be harmful to E. coli correlated well with E. coli decay at laboratory scale, such correlations were less evident (high pH) or non-existent (sunlight intensity) at bench scale. This study therefore underlines that controlled experiment to identify conditions of microbial decay can lack the representativeness of real conditions. Future investigations of the mechanisms of microbial decay during wastewater treatment in HRAPs need to be carried out in broth and under conditions as comprehensively representative of HRAP culture as practical.

E. coli strain used in the study: Isolation, cultivation, and description.

(PDF) Click here for additional data file.

Detailed laboratory assay protocols.

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Uncertainty of cell count obtained from pour-plate method.

(PDF) Click here for additional data file.

Calculation of first order decay rate and associated uncertainty during laboratory assays.

(PDF) Click here for additional data file.

Description of Monte Carlo method for the determination of fitted model parameters uncertainty.

(PDF) Click here for additional data file.

Uncertainty associated with the relative contribution of studied mechanisms to E. coli decay during bench assays.

(PDF) Click here for additional data file.

E. coli starvation and heat inactivation during laboratory assays.

(PDF) Click here for additional data file.

Ammonia toxicity to E. coli during laboratory assays.

(PDF) Click here for additional data file.

Alkaline-pH induced toxicity to E. coli during laboratory assays.

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Decay of laboratory versus wildtype E. coli.

(PDF) Click here for additional data file.

Interaction between elevated pH and sunlight mediated E. coli decay.

(PDF) Click here for additional data file.

Impact of photosensitizers on E. coli decay under sunlight during laboratory assays.

(PDF) Click here for additional data file.

E. coli decay during bench assays: Relationship with environmental parameters.

(PDF) Click here for additional data file.

E. coli decay due to sunlight direct damage in opaque broth: Model development.

(PDF) Click here for additional data file.

Sensitivity analysis of E. coli decay rate modelling in HRAP broth.

(PDF) Click here for additional data file. 8 Feb 2022
PONE-D-21-40922
Study from microcosms and mesocosms reveals Escherichia coli removal in high rate algae ponds during domestic wastewater treatment is primarily caused by dark decay
PLOS ONE Dear Dr. Paul, Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process. Please submit your revised manuscript by Mar 25 2022 11:59PM. If you will need more time than this to complete your revisions, please reply to this message or contact the journal office at plosone@plos.org. When you're ready to submit your revision, log on to https://www.editorialmanager.com/pone/ and select the 'Submissions Needing Revision' folder to locate your manuscript file. Please include the following items when submitting your revised manuscript:
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Experiments must have been conducted rigorously, with appropriate controls, replication, and sample sizes. The conclusions must be drawn appropriately based on the data presented. Reviewer #1: Yes Reviewer #2: Yes ********** 2. Has the statistical analysis been performed appropriately and rigorously? Reviewer #1: Yes Reviewer #2: Yes ********** 3. Have the authors made all data underlying the findings in their manuscript fully available? The PLOS Data policy requires authors to make all data underlying the findings described in their manuscript fully available without restriction, with rare exception (please refer to the Data Availability Statement in the manuscript PDF file). The data should be provided as part of the manuscript or its supporting information, or deposited to a public repository. For example, in addition to summary statistics, the data points behind means, medians and variance measures should be available. If there are restrictions on publicly sharing data—e.g. participant privacy or use of data from a third party—those must be specified. Reviewer #1: Yes Reviewer #2: Yes ********** 4. Is the manuscript presented in an intelligible fashion and written in standard English? PLOS ONE does not copyedit accepted manuscripts, so the language in submitted articles must be clear, correct, and unambiguous. Any typographical or grammatical errors should be corrected at revision, so please note any specific errors here. Reviewer #1: Yes Reviewer #2: Yes ********** 5. Review Comments to the Author Please use the space provided to explain your answers to the questions above. You may also include additional comments for the author, including concerns about dual publication, research ethics, or publication ethics. (Please upload your review as an attachment if it exceeds 20,000 characters) Reviewer #1: Authors have presented a very interesting study on targeting a protocol for removal of pathogenic bacteria from wastewater used as a medium for growth of microalgae. I have few queries to which authors may reply: 1. Why only one bacteria was tested since in wastewater there are other pathogenic and non pathogenic bacteria present too. 2. If the study showed that E coli decay at alkaline pH and dark decay mechanism which although authors have shown statistically , however, to anyone studying the algae related cultivation using wastewater understanding the physiology of this study is very important. Authors should add up what is the biology behind the adaption of this behavior. 3. Further another important question is whether this study is useful for other algae also or only for Scenedesmus spp. Why many microalgae species which grow under alkaline conditions face bacterial infection, authors may throw some reasoning at this aspect so that the technology and protocol can be adapted by the readers for other algae too. Reviewer #2: High-rate algae ponds (HRAPs) are wastewater treatment systems that enable combining cost-efficient secondary treatment at small scale with the production of a harvestable biomass for subsequent valorisation (e.g. biofuel). However, there is still limited data on pathogen removal during long-term HRAP operation with real effluents. This manuscript showed the potential significance of mechanisms driving pathogen removal in lab scale and bench scale in light of the specific environmental conditions occurring in HRAPs. However, Authors should improve this by following comments: Starvation and heat inactivation: You have good observation in this section but even at less temperature E coli including other bacteria can still survive and flourish in photobioreactors with monoculture of microalga. Please justify with more references. Algal-metabolite section is still unclear please addon this with few references. Can author clarify their hypothesis besides giving a random observation without proper experiments “A direct comparison of the rate values is however difficult given the different microbial indicator used and, especially, the likely higher light attenuation experienced in filtrated algae pond water (potentially reducing the effect of direct DNA damage) and the potential presence of photosensitizers and radical scavengers in this medium (with unknown net effect on photo-oxidation).” The similar for here as well please clarify this statement with the proper reference “The impact dissolved oxygen (DO) concentration on sunlight-mediated removal could not be investigated in laboratory assays due to difficulties in reaching HRAP supersaturated DO levels under aseptic conditions. The addition of known photosensitizers was not tested as this manipulation would artificially inflate exogenous photo-oxidation and, therefore, misrepresent the significance of this mechanism in real conditions”. What was other conditions in experiment one and experiment 2 rather than mentioned in Table 2 please stated clearly in manuscript as DO concentration had no apparent impact on E. coli decay at neutral pH during Experiment 2, high DO concentrations were associated with improved E. coli decay under sunlight and darkness during Experiment 1. ********** 6. PLOS authors have the option to publish the peer review history of their article (what does this mean?). If published, this will include your full peer review and any attached files. If you choose “no”, your identity will remain anonymous but your review may still be made public. Do you want your identity to be public for this peer review? For information about this choice, including consent withdrawal, please see our Privacy Policy. Reviewer #1: Yes: vandana vinayak Reviewer #2: No [NOTE: If reviewer comments were submitted as an attachment file, they will be attached to this email and accessible via the submission site. 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2 Mar 2022 GENERAL REPLY We thank the reviewers for the valuable points they raised. Reviewer 1’s main criticism was that our study could have investigated the removal of other pathogen indicators. Reviewer 2 asked us to clarify several discussion points and cite additional literature. All Reviewers’ comments are addressed individually below. The lines references provided correspond to the line numbering in the corrected version of the manuscript with tracked changes. REPLY TO COMMENTS REVIEWER #1: Authors have presented a very interesting study on targeting a protocol for removal of pathogenic bacteria from wastewater used as a medium for growth of microalgae. I have few queries to which authors may reply: 1. Why only one bacteria was tested since in wastewater there are other pathogenic and non pathogenic bacteria present too. We fully acknowledge that many pathogenic and non-pathogenic bacteria are present in wastewater and that the conclusions from our studies are only specific to the pathogen indicator Escherichia coli, as discussed in the manuscript L 548 – 554. Our scope was limited to human pathogens (the only relevant to wastewater discharge regulation) and due to resource limitations, we focused on a single indicator. E. coli was selected due to its relevance in water disinfection technology as indicated in our introduction (L 64 – 65). We took great care to not generalize our conclusions and agree further investigations are needed to identify potential differences between E. coli and other indicators. To further lay emphasis on this point, the following sentence was added in the revised manuscript (L 552 – 554): “Similar studies should therefore be carried out to investigate the removal of different indicators during HRAP based wastewater treatment.” 2. If the study showed that E coli decay at alkaline pH and dark decay mechanism which although authors have shown statistically , however, to anyone studying the algae related cultivation using wastewater understanding the physiology of this study is very important. Authors should add up what is the biology behind the adaption of this behavior. We respectfully apologize for not being sure to fully understand the question. Extensive characterization of the microbial communities found in the wastewater effluent and HRAP broth was beyond the scope of our study focusing on the human pathogen indicator E. coli. We noted, L127 – 129, that “Prior monitoring showed Scenedesmus spp. was the dominant species in the HRAP (unpublished data) but this was not verified during bench assays”. We agree that ecology may impact the type and rates of dark removal mechanisms experienced, such as predation or toxicity from algae metabolites. We could not evidence any impact from the presence of algal metabolites during our laboratory study but noted this finding should not be broadly extrapolated (L214 – 220). We could not investigate predation for practical reasons, as noted in the manuscript in Table 1 and L 417 – 421, and later indicated this should be attempted in future studies (L 515 – 518). We hope these few precisions are answering Reviewer 1’s comment. 3. Further another important question is whether this study is useful for other algae also or only for Scenedesmus spp. Why many microalgae species which grow under alkaline conditions face bacterial infection, authors may throw some reasoning at this aspect so that the technology and protocol can be adapted by the readers for other algae too. We again respectfully note our scope was the study of human pathogens rather than algae pathogens as the comment on “microalgae [facing] bacterial infection” may infer. Focusing on microalgae-based wastewater treatment, we believe our main finding on the significance of E. coli dark decay can be extrapolated to other microalgae ecologies. We however agree that the magnitude of day-time pH increase and episode of algal-metabolite toxicity are likely to be impacted by the type and activity of the microalgae found in the system. This is now more clearly expressed L 521 – 525. “It is also critical to consider the findings from this study may not apply to HRAPs operated under significantly different conditions (e.g. different climates, pH control through CO2 addition, Mehrabadi et al. 2017) and/or hosting different microalgae ecology (e.g. influencing pH variations (57) potentially generating toxic metabolites (48)”. With regards to microalgae infection by bacteria, we note that the type of bacteria infecting microalgae grown at high pH should be physiologically very different than pathogen infecting the human body (pH 5-7). We therefore prefer to not speculate on this particular topic. REVIEWER #2: High-rate algae ponds (HRAPs) are wastewater treatment systems that enable combining cost-efficient secondary treatment at small scale with the production of a harvestable biomass for subsequent valorisation (e.g. biofuel). However, there is still limited data on pathogen removal during long-term HRAP operation with real effluents. This manuscript showed the potential significance of mechanisms driving pathogen removal in lab scale and bench scale in light of the specific environmental conditions occurring in HRAPs. However, Authors should improve this by following comments: Starvation and heat inactivation: You have good observation in this section but even at less temperature E coli including other bacteria can still survive and flourish in photobioreactors with monoculture of microalga. Please justify with more references. We agree that although we never observed E. coli growth in the dark, our experimental observations do not exclude the possibility for this bacterium, or other pathogens, to grow under other conditions. We also acknowledge that E. coli regrowth has been reported at high temperature in tropical ponds. A key attribute of pathogen indicators used for wastewater management is precisely not to be able to grow under the conditions typically experienced during wastewater treatment although, again, conditions can become ‘atypical’ in certain climates in ponds. We added the following sentence to discuss this possibility L209 - 213: “While E. coli re-growth has been reported in some systems, particularly in warm tropical ponds (26), no significant increase in E. coli cell count was noticed during this study, even at the warmest temperature tested (Fig S7-2 in S7 Appendix). Caution is therefore mandated before ruling out the possibility of re-growth, for E. coli or other indicators, depending on the conditions experienced.” Algal-metabolite section is still unclear please addon this with few references. The following sentence was added L214 – 216: “despite previous evidence that several species of green microalgae can excrete a wide array of antibacterial compounds harmful to E. coli (27)”. For clarity, the sentence directly following was amended as follows (L216 – 220): “Algae-based toxicity was therefore unlikely significant under the conditions tested. This finding cannot be broadly extrapolated in view of the geographical and temporal variability in algal diversity found in HRAPs (28), and the diverse potential bactericidal compounds each species may be secreting (27,29)”. Can author clarify their hypothesis besides giving a random observation without proper experiments “A direct comparison of the rate values is however difficult given the different microbial indicator used and, especially, the likely higher light attenuation experienced in filtrated algae pond water (potentially reducing the effect of direct DNA damage) and the potential presence of photosensitizers and radical scavengers in this medium (with unknown net effect on photo-oxidation).” There is no hypothesis behind this statement. We first felt it was important to compare our rates with other values reported in the literature. As reported in the manuscript L 281 – 290, we found 2 studies reporting rates obtained in relatively similar experiments which were within the same order of magnitude as found during our study. We nevertheless felt this comparison was not sufficient to establish a trend and wanted to warm the readers that differences in experimental conditions and indicators (as identified for the two studies cited) could lead to very different results (meaning the ‘similarity’ we report in the rates may just be accidental). Admittedly, it is challenging to determine how incubating micro-organisms in a filtrate may increase or mitigate sunlight dependent decay. Consequently, we propose to remove the initial sentence cited below to avoid speculative statements (L290 – 293). As authors, we feel that this sentence should remain in the manuscript, but we leave it to the appreciation of Reviewer 2 and the Editor to decide if the sentence should be removed or not. “the likely higher light attenuation experienced in filtrated algae pond water (potentially reducing the effect of direct DNA damage) and the potential presence of photosensitizers and radical scavengers in this medium (with unknown net effect on photo-oxidation)” The similar for here as well please clarify this statement with the proper reference “The impact dissolved oxygen (DO) concentration on sunlight-mediated removal could not be investigated in laboratory assays due to difficulties in reaching HRAP supersaturated DO levels under aseptic conditions. The addition of known photosensitizers was not tested as this manipulation would artificially inflate exogenous photo-oxidation and, therefore, misrepresent the significance of this mechanism in real conditions”. Our comment about dissolved oxygen (DO) only expresses the practical limitation that we could not carry out an experiment that would require, we believe, constantly bubbling our cultures with O2-enriched air to reach values as high as found in HRAPs (up to 300 % of the atmosphere saturation value, Sutherland et al. 2014). This complex experiment was deemed unnecessary based on our experimental data, so no reference is needed here. With regards to the addition of photosensitizers, recording a positive impact (on decay) of adding known photosensitizer would simply confirm the known action of these chemicals (that photosensitizer generate radicals causing decay) but this confirmation would neither validate nor invalidate the possibility that unknown molecules found in the broth indeed acted as photosensitizers. In other words, we would likely record significant exogenous photo-oxidation in the presence of known added photosensitizer, but recording this mechanism in this artificial setting would not evidence that the mechanisms remains significant in the absence of added chemical. The sentence L 322 – 330 was reworded as: “The specific impact of dissolved oxygen (DO) concentration on sunlight-mediated removal could not be practically investigated in laboratory assays due to technical difficulties in reaching HRAP supersaturated DO levels (up to 300 % of the atmospheric saturation values (34)) under aseptic conditions. The addition of known photosensitizers was not tested as this manipulation would at best only verify that these known chemicals generate radicals enhancing E. coli removal, without evidencing that the mechanism is indeed taking place in the absence of the added chemicals.” What was other conditions in experiment one and experiment 2 rather than mentioned in Table 2 please stated clearly in manuscript as DO concentration had no apparent impact on E. coli decay at neutral pH during Experiment 2, high DO concentrations were associated with improved E. coli decay under sunlight and darkness during Experiment 1. We thank Reviewer 2 for highlighting that the data reported here may be confusing. We acknowledge there was significantly higher decay in Reactor A than Reactor B during the first bench experiment and that the only condition qualitatively different between the reactors during each experiment was DO concentration (similar temperature, high pH, and light conditions). Yet, we concluded DO had no impact because: - DO had no impact during Experiment 2, when it was again the only discriminatory parameter between the 2 reactors (similar temperature, neutral pH, and light conditions). - the literature consensus is that DO is not toxic by itself but only enhances ROS formation under sunlight. Yet, during Experiment 1, decay was also higher at high DO than low DO in the dark. This increased decay under darkness suggests the differences recorded may have been caused by another factor than DO. We therefore suggest the higher decay recorded in Reactor A during Experiment 1 was caused by the slightly higher temperature recorded in this reactor enhancing alkaline pH induced E. coli decay, as shown during our laboratory experiments. We propose the following changes in the paragraph “Impact of DO concentration” (L359 – 378) to clarify this: “While DO concentration had no apparent impact on E. coli decay at neutral pH (Experiment 2), high DO concentrations were associated with improved E. coli decay at high pH (Experiment 1). Critically, these differences (or lack of) were reported regardless of if the flasks were exposed to light or incubated in darkness, which disagrees with past literature showing DO concentration impacts E. coli via the formation of ROS (reactive oxygen species) under sunlight radiation but does not impact E. coli survival in the dark (31,44). Light-mediated ROS formation should have therefore enhanced higher E. coli decay only under light exposure and this effect should have been see in both Experiments 1 and 2 under sunlight, as opposed to the present observations showing not impact of light, but an interplay between the impacts of pH and DO concentration (Experiment 1 versus 2). The positive impact of DO concentration at high pH (Experiment 1) was instead likely due to the higher temperatures experienced in Reactor A than Reactor B. Indeed, Reactor A was slightly smaller than Reactor B, meaning higher temperatures were typically experienced in Reactor A (high DO) than in Reactor B (low DO). Since alkaline pH-induced toxicity to E. coli is sensitive to temperature (as evidenced during laboratory assays), temperature likely enhanced alkaline pH-induced toxicity more in Reactor A than in Reactor B during Experiment 1 conducted at high pH. This positive impact of temperature on alkaline pH-induced toxicity was logically not significant during Experiment 2 conducted at neutral pH. DO concentration is therefore concluded to have no significant impact on E. coli removal under the conditions studied.” Submitted filename: Response to Reviewers.docx Click here for additional data file. 4 Mar 2022 Study from microcosms and mesocosms reveals Escherichia coli removal in high rate algae ponds during domestic wastewater treatment is primarily caused by dark decay PONE-D-21-40922R1 Dear Dr. Paul, We’re pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it meets all outstanding technical requirements. Within one week, you’ll receive an e-mail detailing the required amendments. When these have been addressed, you’ll receive a formal acceptance letter and your manuscript will be scheduled for publication. An invoice for payment will follow shortly after the formal acceptance. To ensure an efficient process, please log into Editorial Manager at http://www.editorialmanager.com/pone/, click the 'Update My Information' link at the top of the page, and double check that your user information is up-to-date. If you have any billing related questions, please contact our Author Billing department directly at authorbilling@plos.org. If your institution or institutions have a press office, please notify them about your upcoming paper to help maximize its impact. If they’ll be preparing press materials, please inform our press team as soon as possible -- no later than 48 hours after receiving the formal acceptance. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information, please contact onepress@plos.org. Kind regards, Dr. Harish Academic Editor PLOS ONE Additional Editor Comments (optional): Reviewers' comments: 9 Mar 2022 PONE-D-21-40922R1 Study from microcosms and mesocosms reveals Escherichia coli removal in high rate algae ponds during domestic wastewater treatment is primarily caused by dark decay. Dear Dr. Chambonniere: I'm pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department. If your institution or institutions have a press office, please let them know about your upcoming paper now to help maximize its impact. If they'll be preparing press materials, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org. If we can help with anything else, please email us at plosone@plos.org. Thank you for submitting your work to PLOS ONE and supporting open access. Kind regards, PLOS ONE Editorial Office Staff on behalf of Dr. Dr. Harish Academic Editor PLOS ONE
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1.  Modelling of coliform removal in 186 facultative and maturation ponds around the world.

Authors:  Marcos Von Sperling
Journal:  Water Res       Date:  2005-11-28       Impact factor: 11.236

2.  Influence of pH, Oxygen, and Humic Substances on Ability of Sunlight To Damage Fecal Coliforms in Waste Stabilization Pond Water.

Authors:  T P Curtis; D D Mara; S A Silva
Journal:  Appl Environ Microbiol       Date:  1992-04       Impact factor: 4.792

3.  Modeling the Endogenous Sunlight Inactivation Rates of Laboratory Strain and Wastewater E. coli and Enterococci Using Biological Weighting Functions.

Authors:  Andrea I Silverman; Kara L Nelson
Journal:  Environ Sci Technol       Date:  2016-11-07       Impact factor: 9.028

Review 4.  Antibacterial, antifungal and antimycobacterial compounds from cyanobacteria.

Authors:  Shasank S Swain; Sudhir K Paidesetty; Rabindra N Padhy
Journal:  Biomed Pharmacother       Date:  2017-04-15       Impact factor: 6.529

5.  Growth of Escherichia coli at elevated temperatures.

Authors:  Upinder Fotadar; Philip Zaveloff; Louis Terracio
Journal:  J Basic Microbiol       Date:  2005       Impact factor: 2.281

Review 6.  Removal of organic micropollutants in waste stabilisation ponds: A review.

Authors:  Yolanta Gruchlik; Kathryn Linge; Cynthia Joll
Journal:  J Environ Manage       Date:  2017-10-23       Impact factor: 6.789

7.  On the regulatory role of dipeptidyl peptidase IV (=CD=adenosine deaminase complexing protein) on adenosine deaminase activity.

Authors:  Itzhak Ben-Shooshan; Amit Kessel; Nir Ben-Tal; Rivka Cohen-Luria; Abraham H Parola
Journal:  Biochim Biophys Acta       Date:  2002-05-21

8.  Sunlight inactivation of fecal indicator bacteria and bacteriophages from waste stabilization pond effluent in fresh and saline waters.

Authors:  Lester W Sinton; Carollyn H Hall; Philippa A Lynch; Robert J Davies-Colley
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

9.  Inactivation of indicator organisms in wastewater treated by a high rate algal pond system.

Authors:  P Young; N Buchanan; H J Fallowfield
Journal:  J Appl Microbiol       Date:  2016-08       Impact factor: 3.772

10.  Study from microcosms and mesocosms reveals Escherichia coli removal in high rate algae ponds during domestic wastewater treatment is primarily caused by dark decay.

Authors:  Paul Chambonniere; John E Bronlund; Benoit Guieysse
Journal:  PLoS One       Date:  2022-03-17       Impact factor: 3.240

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  1 in total

1.  Study from microcosms and mesocosms reveals Escherichia coli removal in high rate algae ponds during domestic wastewater treatment is primarily caused by dark decay.

Authors:  Paul Chambonniere; John E Bronlund; Benoit Guieysse
Journal:  PLoS One       Date:  2022-03-17       Impact factor: 3.240

  1 in total

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