Sanchita Bhadra1,2, Inyup Paik1,2, Jose-Angel Torres3,4, Stéphane Fadanka5, Chiara Gandini6,7, Harry Akligoh8, Jenny Molloy6, Andrew D Ellington1,2. 1. Department of Molecular Biosciences, College of Natural Sciences, The University of Texas at Austin, Austin, Texas. 2. Center for Systems and Synthetic Biology, The University of Texas at Austin, Austin, Texas. 3. Freshman Research Initiative, DIY Diagnostics Stream, The University of Texas at Austin, Austin, Texas. 4. McGovern Medical School, University of Texas Health Science Center at Houston, Houston, Texas. 5. Mboalab Biotech, Yaoundé, Cameroon. 6. Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK. 7. Nuclera Nucleics Ltd., Cambridge, UK. 8. Hive Biolab, Kentinkrono, Kumasi, Ghana.
Abstract
Protein reagents are indispensable for most molecular and synthetic biology procedures. Most conventional protocols rely on highly purified protein reagents that require considerable expertise, time, and infrastructure to produce. In consequence, most proteins are acquired from commercial sources, reagent expense is often high, and accessibility may be hampered by shipping delays, customs barriers, geopolitical constraints, and the need for a constant cold chain. Such limitations to the widespread availability of protein reagents, in turn, limit the expansion and adoption of molecular biology methods in research, education, and technology development and application. Here, we describe protocols for producing a low-resource and locally sustainable reagent delivery system, termed "cellular reagents," in which bacteria engineered to overexpress proteins of interest are dried and can then be used directly as reagent packets in numerous molecular biology reactions, without the need for protein purification or a constant cold chain. As an example of their application, we describe the execution of polymerase chain reaction (PCR) and loop-mediated isothermal amplification (LAMP) using cellular reagents, detailing how to replace pure protein reagents with optimal amounts of rehydrated cellular reagents. We additionally describe a do-it-yourself fluorescence visualization device for using these cellular reagents in common molecular biology applications. The methods presented in this article can be used for low-cost, on-site production of commonly used molecular biology reagents (including DNA and RNA polymerases, reverse transcriptases, and ligases) with minimal instrumentation and expertise, and without the need for protein purification. Consequently, these methods should generally make molecular biology reagents more affordable and accessible.
Protein reagents are indispensable for most molecular and synthetic biology procedures. Most conventional protocols rely on highly purified protein reagents that require considerable expertise, time, and infrastructure to produce. In consequence, most proteins are acquired from commercial sources, reagent expense is often high, and accessibility may be hampered by shipping delays, customs barriers, geopolitical constraints, and the need for a constant cold chain. Such limitations to the widespread availability of protein reagents, in turn, limit the expansion and adoption of molecular biology methods in research, education, and technology development and application. Here, we describe protocols for producing a low-resource and locally sustainable reagent delivery system, termed "cellular reagents," in which bacteria engineered to overexpress proteins of interest are dried and can then be used directly as reagent packets in numerous molecular biology reactions, without the need for protein purification or a constant cold chain. As an example of their application, we describe the execution of polymerase chain reaction (PCR) and loop-mediated isothermal amplification (LAMP) using cellular reagents, detailing how to replace pure protein reagents with optimal amounts of rehydrated cellular reagents. We additionally describe a do-it-yourself fluorescence visualization device for using these cellular reagents in common molecular biology applications. The methods presented in this article can be used for low-cost, on-site production of commonly used molecular biology reagents (including DNA and RNA polymerases, reverse transcriptases, and ligases) with minimal instrumentation and expertise, and without the need for protein purification. Consequently, these methods should generally make molecular biology reagents more affordable and accessible.
Authors: J Membrillo-Hernández; A Núñez-de la Mora; T del Rio-Albrechtsen; R Camacho-Carranza; M C Gomez-Eichelmann Journal: J Basic Microbiol Date: 1995 Impact factor: 2.281
Authors: Inyup Paik; Phuoc H T Ngo; Raghav Shroff; Daniel J Diaz; Andre C Maranhao; David J F Walker; Sanchita Bhadra; Andrew D Ellington Journal: Biochemistry Date: 2021-11-11 Impact factor: 3.321
Authors: Sanchita Bhadra; Arti Pothukuchy; Raghav Shroff; Austin W Cole; Michelle Byrom; Jared W Ellefson; Jimmy D Gollihar; Andrew D Ellington Journal: PLoS One Date: 2018-08-15 Impact factor: 3.240
Authors: Sanchita Bhadra; Miguel A Saldaña; Hannah Grace Han; Grant L Hughes; Andrew D Ellington Journal: Viruses Date: 2018-12-14 Impact factor: 5.048
Authors: Alexander James Webb; Fiona Allan; Richard J R Kelwick; Feleke Zewge Beshah; Safari Methusela Kinung'hi; Michael R Templeton; Aidan Mark Emery; Paul S Freemont Journal: PLoS Negl Trop Dis Date: 2022-07-26