| Literature DB >> 35252095 |
Pragya D Yadav1, Rima R Sahay1, Anukumar Balakrishnan2, Sreelekshmy Mohandas1, Chandni Radhakrishnan3, Mangesh D Gokhale1, R Balasubramanian2, Priya Abraham1, Nivedita Gupta4, A P Sugunan2, Rajan Khobragade5, Kalpana George6, Anita Shete1, Savita Patil1, Ullas Padinjaremattathil Thankappan1, Hitesh Dighe1, Jijo Koshy2, Vivek Vijay2, R Gayathri3, P Jayesh Kumar3, Asma Rahim7, A Naveen8, Sarala Nair9, V R Rajendran10, V Jayasree11, Triparna Majumdar1, Rajlaxmi Jain1, Prasanth Viswanathan6, Deepak Y Patil1, Abhinendra Kumar1, Dimpal A Nyayanit1, Prasad Sarkale1, Ashwini Waghmare1, Shrikant Baradkar1, Pranita Gawande1, Poonam Bodke1, Kaumudi Kalele1, Jyoti Yemul1, Sachin Dhaigude1, Manjunath Holepannawar1, Sanjay Gopale1, Ganesh Chopade1, Shilpa Ray1, Priyanka Waghmare1, Jitendra Narayan4, Basavaraj Mathapati1, Manoj Kadam1, Abhimanyu Kumar1, Annasaheb Suryawanshi1, Beena Philomina Jose6, Saritha Sivadas6, N P Akash6, T V Vimisha6, K V Keerthi6.
Abstract
We report here a Nipah virus (NiV) outbreak in Kozhikode district of Kerala state, India, which had caused fatal encephalitis in a 12-year-old boy and the outbreak response, which led to the successful containment of the disease and the related investigations. Quantitative real-time reverse transcription (RT)-PCR, ELISA-based antibody detection, and whole genome sequencing (WGS) were performed to confirm the NiV infection. Contacts of the index case were traced and isolated based on risk categorization. Bats from the areas near the epicenter of the outbreak were sampled for throat swabs, rectal swabs, and blood samples for NiV screening by real-time RT-PCR and anti-NiV bat immunoglobulin G (IgG) ELISA. A plaque reduction neutralization test was performed for the detection of neutralizing antibodies. Nipah viral RNA could be detected from blood, bronchial wash, endotracheal (ET) secretion, and cerebrospinal fluid (CSF) and anti-NiV immunoglobulin M (IgM) antibodies from the serum sample of the index case. Rapid establishment of an onsite NiV diagnostic facility and contact tracing helped in quick containment of the outbreak. NiV sequences retrieved from the clinical specimen of the index case formed a sub-cluster with the earlier reported Nipah I genotype sequences from India with more than 95% similarity. Anti-NiV IgG positivity could be detected in 21% of Pteropus medius (P. medius) and 37.73% of Rousettus leschenaultia (R. leschenaultia). Neutralizing antibodies against NiV could be detected in P. medius. Stringent surveillance and awareness campaigns need to be implemented in the area to reduce human-bat interactions and minimize spillover events, which can lead to sporadic outbreaks of NiV.Entities:
Keywords: Kerala; Nipah virus (NiV); Pteropus medius; bats; seropositivity
Mesh:
Year: 2022 PMID: 35252095 PMCID: PMC8891450 DOI: 10.3389/fpubh.2022.818545
Source DB: PubMed Journal: Front Public Health ISSN: 2296-2565
Figure 1The map shows the Nipah virus outbreak location in India and in the inset, the location of the index case house (red icon), and the four bat sampling sites (blue icon).
Figure 2Contact tracing and probable transmission dynamics in the Nipah virus outbreak in Kozhikode district, Kerala state, India, 2021.
Figure 3Neighbor Joining tree of Nipah virus full genome obtained from the samples of the index case in Kerala outbreak 2021.
Amino acid changes in the different genotypes across representative human and bat sequences for genes encoded by NiV relative to NC 002728.1.
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| NC 002728.1 NiV/MY/HU/1999/CDC Reference genome of Nipah virus | M | Human |
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| NiV/India/HU/2021/sample | I | Human | N | – | S | – | – | – | G | E | – | H | L | – | I | G | – | L | – | – | N | – | L | – | R | T | – | D |
| MH523642.1 NiV/India/HU/2018/MCL-18-H-1088 | I | Human | N | – | S | – | – | – | G | E | – | H | L | K | I | G | – | L | – | – | N | – | L | N | R | T | – | D |
| MN549409.1 NiV/India/P.medius/2019/MCL-19-BAT-572-7 | I | Bat | N | – | S | – | – | – | G | E | – | H | L | – | I | G | – | L | – | – | N | – | – | – | R | T | – | D |
| MK673592.1 NiV/BD/HU/2014/201601241 | B | Human | – | K | – | – | P | – | – | – | K | – | – | – | I | G | – | – | – | G | – | N | – | – | – | – | – | – |
| MK575070.1 NiV/BD/P.medius/EHA/2013/Sylhet191 | B | Bat | – | K | – | R | – | A | – | – | – | H | – | – | I | – | – | – | R | G | – | N | – | – | – | – | V | – |
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| NiV/India/HU/2021/sample | I | Human | L | – | M | V | – | I | – | T | – | – | – | – | C | Y | – | – | – | |||||||||
| MH523642.1 NiV/India/HU/2018/MCL-18-H-1088 | I | Human | L | – | M | V | – | I | – | T | – | – | – | – | Y | Y | – | – | – | |||||||||
| MN549409.1 NiV/India/P.medius/2019/MCL-19-BAT-572-7 | I | Bat | L | – | M | V | – | I | – | T | – | – | – | – | Y | – | – | – | – | |||||||||
| MK673592.1 NiV/BD/HU/2014/201601241 | B | Human | – | I | K | – | E | – | K | – | – | – | – | – | Y | Y | – | K | D | |||||||||
| MK575070.1 NiV/BD/P.medius/EHA/2013/Sylhet191 | B | Bat | – | – | K | – | E | – | K | T | R | S | M | D | – | Y | I | K | D | |||||||||
The bold values are the amino acid at positions mentioned in the table for each gene of the reference Nipah virus strain, NC 002728.1 NiV/MY/HU/1999/CDC.