Literature DB >> 35218541

Hydrophobic and Hydrogel-Based Methods for Passive Tissue Clearing.

Frank L Jalufka1, Sun Won Min1, Madison E Platt1, Anna L Pritchard1, Theodore E Margo1, Alexandra O Vernino1, Megan A Kirchhoff1, Ryan T Massopust2, Dylan A McCreedy3,4.   

Abstract

Optical tissue clearing enables the precise imaging of cellular and subcellular structures in whole organs and tissues without the need for physical tissue sectioning. By combining tissue clearing with confocal or lightsheet microscopy, 3D images can be generated of entire specimens for visualization and large-scale data analysis. Here we demonstrate two different passive tissue clearing techniques that are compatible with immunofluorescent staining and lightsheet microscopy: PACT, an aqueous hydrogel-based clearing method, and iDISCO+, an organic solvent-based clearing method.
© 2022. The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature.

Entities:  

Keywords:  Lightsheet microscopy; PACT; Passive CLARITY technique; Tissue clearing; iDISCO+

Mesh:

Substances:

Year:  2022        PMID: 35218541     DOI: 10.1007/978-1-0716-2051-9_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  13 in total

Review 1.  A beginner's guide to tissue clearing.

Authors:  Pablo Ariel
Journal:  Int J Biochem Cell Biol       Date:  2017-01-07       Impact factor: 5.085

2.  iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.

Authors:  Nicolas Renier; Zhuhao Wu; David J Simon; Jing Yang; Pablo Ariel; Marc Tessier-Lavigne
Journal:  Cell       Date:  2014-10-30       Impact factor: 41.582

3.  Three-dimensional imaging of solvent-cleared organs using 3DISCO.

Authors:  Ali Ertürk; Klaus Becker; Nina Jährling; Christoph P Mauch; Caroline D Hojer; Jackson G Egen; Farida Hellal; Frank Bradke; Morgan Sheng; Hans-Ulrich Dodt
Journal:  Nat Protoc       Date:  2012-10-11       Impact factor: 13.491

4.  Chemical Landscape for Tissue Clearing Based on Hydrophilic Reagents.

Authors:  Kazuki Tainaka; Tatsuya C Murakami; Etsuo A Susaki; Chika Shimizu; Rie Saito; Kei Takahashi; Akiko Hayashi-Takagi; Hiroshi Sekiya; Yasunobu Arima; Satoshi Nojima; Masako Ikemura; Tetsuo Ushiku; Yoshihiro Shimizu; Masaaki Murakami; Kenji F Tanaka; Masamitsu Iino; Haruo Kasai; Toshikuni Sasaoka; Kazuto Kobayashi; Kohei Miyazono; Eiichi Morii; Tadashi Isa; Masashi Fukayama; Akiyoshi Kakita; Hiroki R Ueda
Journal:  Cell Rep       Date:  2018-08-21       Impact factor: 9.423

Review 5.  Whole-body and Whole-Organ Clearing and Imaging Techniques with Single-Cell Resolution: Toward Organism-Level Systems Biology in Mammals.

Authors:  Etsuo A Susaki; Hiroki R Ueda
Journal:  Cell Chem Biol       Date:  2016-01-21       Impact factor: 8.116

Review 6.  Clarifying Tissue Clearing.

Authors:  Douglas S Richardson; Jeff W Lichtman
Journal:  Cell       Date:  2015-07-16       Impact factor: 41.582

7.  Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.

Authors:  Nicolas Renier; Eliza L Adams; Christoph Kirst; Zhuhao Wu; Ricardo Azevedo; Johannes Kohl; Anita E Autry; Lolahon Kadiri; Kannan Umadevi Venkataraju; Yu Zhou; Victoria X Wang; Cheuk Y Tang; Olav Olsen; Catherine Dulac; Pavel Osten; Marc Tessier-Lavigne
Journal:  Cell       Date:  2016-05-26       Impact factor: 41.582

8.  Single-cell phenotyping within transparent intact tissue through whole-body clearing.

Authors:  Bin Yang; Jennifer B Treweek; Rajan P Kulkarni; Benjamin E Deverman; Chun-Kan Chen; Eric Lubeck; Sheel Shah; Long Cai; Viviana Gradinaru
Journal:  Cell       Date:  2014-07-31       Impact factor: 41.582

Review 9.  Tissue clearing and its applications in neuroscience.

Authors:  Hiroki R Ueda; Ali Ertürk; Kwanghun Chung; Viviana Gradinaru; Alain Chédotal; Pavel Tomancak; Philipp J Keller
Journal:  Nat Rev Neurosci       Date:  2020-02       Impact factor: 34.870

10.  Structural and molecular interrogation of intact biological systems.

Authors:  Kwanghun Chung; Jenelle Wallace; Sung-Yon Kim; Sandhiya Kalyanasundaram; Aaron S Andalman; Thomas J Davidson; Julie J Mirzabekov; Kelly A Zalocusky; Joanna Mattis; Aleksandra K Denisin; Sally Pak; Hannah Bernstein; Charu Ramakrishnan; Logan Grosenick; Viviana Gradinaru; Karl Deisseroth
Journal:  Nature       Date:  2013-04-10       Impact factor: 49.962

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