Literature DB >> 26186186

Clarifying Tissue Clearing.

Douglas S Richardson1, Jeff W Lichtman2.   

Abstract

Biological specimens are intrinsically three dimensional; however, because of the obscuring effects of light scatter, imaging deep into a tissue volume is problematic. Although efforts to eliminate the scatter by "clearing" the tissue have been ongoing for over a century, there have been a large number of recent innovations. This Review introduces the physical basis for light scatter in tissue, describes the mechanisms underlying various clearing techniques, and discusses several of the major advances in light microscopy for imaging cleared tissue.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26186186      PMCID: PMC4537058          DOI: 10.1016/j.cell.2015.06.067

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  57 in total

1.  From plaque to pretzel: fold formation and acetylcholine receptor loss at the developing neuromuscular junction.

Authors:  M J Marques; J A Conchello; J W Lichtman
Journal:  J Neurosci       Date:  2000-05-15       Impact factor: 6.167

2.  A modified Spalteholz technique with preservation of the histology.

Authors:  H Steinke; W Wolff
Journal:  Ann Anat       Date:  2001-01       Impact factor: 2.698

3.  Insect NMDA receptors mediate juvenile hormone biosynthesis.

Authors:  Ann-Shyn Chiang; Wei-Yong Lin; Hsin-Ping Liu; Maciej A Pszczolkowski; Tsai-Feng Fu; Shu-Ling Chiu; Glenn L Holbrook
Journal:  Proc Natl Acad Sci U S A       Date:  2002-01-02       Impact factor: 11.205

4.  Two-photon imaging to a depth of 1000 microm in living brains by use of a Ti:Al2O3 regenerative amplifier.

Authors:  Patrick Theer; Mazahir T Hasan; Winfried Denk
Journal:  Opt Lett       Date:  2003-06-15       Impact factor: 3.776

Review 5.  Fluorescence microscopy.

Authors:  Jeff W Lichtman; José-Angel Conchello
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

Review 6.  Optical sectioning microscopy.

Authors:  José-Angel Conchello; Jeff W Lichtman
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

Review 7.  Engineered antibody fragments and the rise of single domains.

Authors:  Philipp Holliger; Peter J Hudson
Journal:  Nat Biotechnol       Date:  2005-09       Impact factor: 54.908

Review 8.  Spectral imaging and linear unmixing in light microscopy.

Authors:  Timo Zimmermann
Journal:  Adv Biochem Eng Biotechnol       Date:  2005       Impact factor: 2.635

Review 9.  Aptamers come of age - at last.

Authors:  David H J Bunka; Peter G Stockley
Journal:  Nat Rev Microbiol       Date:  2006-08       Impact factor: 60.633

10.  Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure.

Authors:  Winfried Denk; Heinz Horstmann
Journal:  PLoS Biol       Date:  2004-10-19       Impact factor: 8.029

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  370 in total

1.  Optical clearing based cellular-level 3D visualization of intact lymph node cortex.

Authors:  Eunjoo Song; Howon Seo; Kibaek Choe; Yoonha Hwang; Jinhyo Ahn; Soyeon Ahn; Pilhan Kim
Journal:  Biomed Opt Express       Date:  2015-09-28       Impact factor: 3.732

2.  Stochastic electrotransport selectively enhances the transport of highly electromobile molecules.

Authors:  Sung-Yon Kim; Jae Hun Cho; Evan Murray; Naveed Bakh; Heejin Choi; Kimberly Ohn; Luzdary Ruelas; Austin Hubbert; Meg McCue; Sara L Vassallo; Philipp J Keller; Kwanghun Chung
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

3.  Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping.

Authors:  Ken Y Chan; Nicholas C Flytzanis; Bin Yang; Jennifer B Treweek; Benjamin E Deverman; Alon Greenbaum; Antti Lignell; Cheng Xiao; Long Cai; Mark S Ladinsky; Pamela J Bjorkman; Charless C Fowlkes; Viviana Gradinaru
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

4.  Advancing multiscale structural mapping of the brain through fluorescence imaging and analysis across length scales.

Authors:  L J Hogstrom; S M Guo; K Murugadoss; M Bathe
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

Review 5.  Viral vector-based tools advance knowledge of basal ganglia anatomy and physiology.

Authors:  Rachel J Sizemore; Sonja Seeger-Armbruster; Stephanie M Hughes; Louise C Parr-Brownlie
Journal:  J Neurophysiol       Date:  2016-02-17       Impact factor: 2.714

Review 6.  A beginner's guide to tissue clearing.

Authors:  Pablo Ariel
Journal:  Int J Biochem Cell Biol       Date:  2017-01-07       Impact factor: 5.085

Review 7.  Extracting structural and functional features of widely distributed biological circuits with single cell resolution via tissue clearing and delivery vectors.

Authors:  Jennifer Brooke Treweek; Viviana Gradinaru
Journal:  Curr Opin Biotechnol       Date:  2016-07-06       Impact factor: 9.740

8.  Pancreatic neuro-insular network in young mice revealed by 3D panoramic histology.

Authors:  Shiue-Cheng Tang; Chia-Ning Shen; Pei-Yu Lin; Shih-Jung Peng; Hung-Jen Chien; Ya-Hsien Chou; Chester E Chamberlain; Pankaj J Pasricha
Journal:  Diabetologia       Date:  2017-09-01       Impact factor: 10.122

9.  Light-sheet Fluorescence Microscopy for the Study of the Murine Heart.

Authors:  Yichen Ding; Zachary Bailey; Victoria Messerschmidt; Jun Nie; Richard Bryant; Sandra Rugonyi; Peng Fei; Juhyun Lee; Tzung K Hsiai
Journal:  J Vis Exp       Date:  2018-09-15       Impact factor: 1.355

10.  Application of a Tissue Clearing Method for the Analysis of Dopaminergic Axonal Projections.

Authors:  Kenta Yamauchi; Megumu Takahashi; Hiroyuki Hioki
Journal:  Methods Mol Biol       Date:  2021
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