| Literature DB >> 35206853 |
Isabelle Kaiser1, Katharina Diehl1,2, Markus V Heppt3, Sonja Mathes4, Annette B Pfahlberg1, Theresa Steeb3, Wolfgang Uter1, Olaf Gefeller1.
Abstract
Transparent and accurate reporting is essential to evaluate the validity and applicability of risk prediction models. Our aim was to evaluate the reporting quality of studies developing and validating risk prediction models for melanoma according to the TRIPOD (Transparent Reporting of a multivariate prediction model for Individual Prognosis Or Diagnosis) checklist. We included studies that were identified by a recent systematic review and updated the literature search to ensure that our TRIPOD rating included all relevant studies. Six reviewers assessed compliance with all 37 TRIPOD components for each study using the published "TRIPOD Adherence Assessment Form". We further examined a potential temporal effect of the reporting quality. Altogether 42 studies were assessed including 35 studies reporting the development of a prediction model and seven studies reporting both development and validation. The median adherence to TRIPOD was 57% (range 29% to 78%). Study components that were least likely to be fully reported were related to model specification, title and abstract. Although the reporting quality has slightly increased over the past 35 years, there is still much room for improvement. Adherence to reporting guidelines such as TRIPOD in the publication of study results must be adopted as a matter of course to achieve a sufficient level of reporting quality necessary to foster the use of the prediction models in applications.Entities:
Keywords: TRIPOD; melanoma; prediction models; reporting quality
Year: 2022 PMID: 35206853 PMCID: PMC8871554 DOI: 10.3390/healthcare10020238
Source DB: PubMed Journal: Healthcare (Basel) ISSN: 2227-9032
Components of the Transparent Reporting of a multivariable prediction model for Individual Prognosis or Diagnosis (TRIPOD) statement adapted from www.tripod-statement.org/ (accessed on 21 December 2021). Items are numbered and subitems are marked with letters.
| Title and abstract | |
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Title (D, V) | Identify the study as developing and/or validating a multivariable prediction model, the target population, and the outcome to be predicted. |
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Abstract (D, V) | Provide a summary of objectives, study design, setting, participants, sample size, predictors, outcome, statistical analysis, results, and conclusions. |
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Background and objectives | |
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(D, V) | Explain the medical context (including whether diagnostic or prognostic) and rationale for developing or validating the multivariable prediction model, including references to existing models. |
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(D, V) | Specify the objectives, including whether the study describes the development or validation of the model or both. |
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Source of data | |
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(D, V) | Describe the study design or source of data (e.g., randomized trial, cohort, or registry data), separately for the development and validation data sets, if applicable. |
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(D, V) | Specify the key study dates, including start of accrual; end of accrual; and, if applicable, end of follow-up. |
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Participants | |
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(D, V) | Specify key elements of the study setting (e.g., primary care, secondary care, general population) including number and location of centres. |
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(D, V) | Describe eligibility criteria for participants. |
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(D, V) | Give details of treatments received, if relevant. |
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Outcome | |
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(D, V) | Clearly define the outcome that is predicted by the prediction model, including how and when assessed. |
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(D, V) | Report any actions to blind assessment of the outcome to be predicted. |
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Predictors | |
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(D, V) | Clearly define all predictors used in developing or validating the multivariable prediction model, including how and when they were measured. |
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(D, V) | Report any actions to blind assessment of predictors for the outcome and other predictors. |
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Sample size (D, V) | Explain how the study size was arrived at. |
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Missing data (D, V) | Describe how missing data were handled (e.g., complete-case analysis, single imputation, multiple imputation) with details of any imputation method. |
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Statistical analysis methods | |
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(D) | Describe how predictors were handled in the analysis. |
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(D) | Specify type of model, all model-building procedures (including any predictor selection), and method for internal validation. |
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(V) | For validation, describe how the predictors were calculated. |
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(D, V) | Specify all measures used to assess model performance and, if relevant, to compare multiple models. |
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(V) | Describe any model updating (e.g., recalibration) arising from the validation, if done. |
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Risk groups (D, V) | Provide details on how risk groups were created, if done. |
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Development vs. validation (V) | For validation, identify any differences from the development data in setting, eligibility criteria, outcome and predictors. |
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Participants | |
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(D, V) | Describe the flow of participants through the study, including the number of participants with and without the outcome and, if applicable, a summary of the follow-up time. A diagram may be helpful. |
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(D, V) | Describe the characteristics of the participants (basic demographics, clinical features, available predictors), including the number of participants with missing data for predictors and outcome. |
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(V) | For validation, show a comparison with the development data of the distribution of important variables (demographics, predictors and outcome). |
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Model development | |
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(D) | Specify the number of participants and outcome events in each analysis |
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(D) | If done, report the unadjusted association between each candidate predictor and outcome. |
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Model specification | |
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(D) | Present the full prediction model to allow predictions for individuals (e.g., all regression coefficients, and model intercept or baseline survival at a given time point) |
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(D) | Explain how to use the prediction model. |
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Model performance (D, V) | Report performance measures (with confidence intervals) for the prediction model. |
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Model-updating (V) | If done, report the results from any model updating (e.g., model specification, model performance, recalibration) |
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Limitations (D, V) | Discuss any limitations of the study (such as nonrepresentative sample, few events per predictor, missing data) |
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Interpretation | |
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(V) | For validation, discuss the results with reference to performance in the development data, and any other validation data. |
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(D, V) | Give an overall interpretation of the results considering objectives, limitations, results from similar studies and other relevant evidence. |
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Implications (D, V) | Discuss the potential clinical use of the model and implications for future research. |
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| Provide information about the availability of supplementary resources, such as study protocol, web calculator, and data sets. |
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Funding (D, V) | Give the source of funding and the role of the funders for the present study. |
D, V: Sub-/Item applies to the reporting of model development and model validation; D: Sub-/Item only applies to the reporting of model development; V: Sub-/Item only applies to the reporting of model validation.
Basic characteristics of studies reporting risk prediction models for melanoma. Studies are ordered according to study type and year of publication. Within studies of the same study type and year of publication, the studies are sorted by the last name of the first author. (N = 42 studies).
| Authors | Study Type | Publication Year | Journal | Journal Subject Category | Impact Factor 2020 | Study Design |
|---|---|---|---|---|---|---|
| English and Armstrong [ | D | 1988 | British Medical Journal | Medicine, Research and Experimental | 39.890 | Case–control |
| Garbe et al. [ | D | 1989 | International Journal of Dermatology | Dermatology | 2.736 | Case–control |
| MacKie et al. [ | D | 1989 | Lancet | Medicine, Research and Experimental | 79.323 | Case–control |
| Augustsson et al. [ | D | 1991 | Acta Dermato-Venereologica | Dermatology | 4.437 | Case–control |
| Marret et al. [ | D | 1992 | Canadian Medical Association Journal | Medicine, Research and Experimental | 8.262 | Case–control |
| Garbe et al. [ | D | 1994 | Journal of Investigative Dermatology | Dermatology | 8.551 | Case–control |
| Barbini et al. [ | D | 1998 | Melanoma Research | Oncology | 3.599 | Case–control |
| Landi et al. [ | D | 2001 | British Journal of Cancer | Oncology | 7.640 | Case–control |
| Harbauer et al. [ | D | 2003 | Melanoma Research | Oncology | 3.599 | Case–control |
| Dwyer et al. [ | D | 2004 | American Journal of Epidemiology | Public, Environmental and Occupational Health | 4.897 | Case–control |
| Fargnoli et al. [ | D | 2004 | Melanoma Research | Oncology | 3.599 | Case–control |
| Cho et al. [ | D | 2005 | Journal of Clinical Oncology | Oncology | 44.544 | Cohort |
| Whiteman and Green [ | D | 2005 | Cancer Epidemiology, Biomarkers and Prevention | Public, Environmental and Occupational Health | 4.254 | Published case–control studies |
| Fears et al. [ | D | 2006 | Journal of Clinical Oncology | Oncology | 44.544 | Case–control |
| Goldberg et al. [ | D | 2007 | Journal of the American Academy of Dermatology | Dermatology | 11.527 | Cohort |
| Mar et al. [ | D | 2011 | Australasian Journal of Dermatology | Dermatology | 2.875 | Published meta-analysis and registry data |
| Nielsen et al. [ | D | 2011 | International Journal of Cancer | Oncology | 7.396 | Cohort |
| Quéreux et al. [ | D | 2011 | European Journal of Cancer Prevention | Oncology | 2.497 | Case–control |
| Williams et al. [ | D | 2011 | Journal of Clinical and Experimental Dermatology Research | NA | NA | Case–control |
| Guther et al. [ | D | 2012 | Journal of the European Academy of Dermatology and Venereology | Dermatology | 6.166 | Cohort |
| Smith et al. [ | D | 2012 | Journal of Clinical Oncology | Oncology | 44.544 | Case–control |
| Bakos et al. [ | D | 2013 | Anais Brasileiros de Dermatologia | Dermatology | 1.896 | Case–control |
| Stefanaki et al. [ | D | 2013 | PLOS ONE | Multidisciplinary Sciences | 3.240 | Case–control |
| Nikolic et al. [ | D | 2014 | Vojnosanitetski pregled | Medicine, Research and Experimental | 0.168 | Case–control |
| Penn et al. [ | D | 2014 | PLOS ONE | Multidisciplinary Sciences | 3.240 | Case–control |
| Sneyd et al. [ | D | 2014 | BMC Cancer | Oncology | 4.430 | Case–control |
| Kypreou et al. [ | D | 2016 | Journal of Investigative Dermatology | Dermatology | 8.551 | Case–control |
| Cho et al. [ | D | 2018 | Journal of the American Academy of Dermatology | Dermatology | 11.527 | Cohort |
| Gu et al. [ | D | 2018 | Human Molecular Genetics | Biochemistry and Molecular Biology | 6.150 | Case–control |
| Hübner et al. [ | D | 2018 | European Journal of Cancer Prevention | Oncology | 2.497 | Cohort study based on data from SCREEN project |
| Olsen et al. [ | D | 2018 | Journal of the National Cancer Institute | Oncology | 13.506 | Cohort study |
| Richter and Koshgoftaar [ | D | 2018 | Proceedings of ACM-BCB’18 | NA | NA | Cohort study based on EHR data |
| Tagliabue et al. [ | D | 2018 | Cancer Management and Research | Oncology | 3.989 | Case–control |
| Bakshi et al. [ | D | 2021 | Journal of the National Cancer Institute | Oncology | 13.506 | Cohort |
| Fontanillas et al. [ | D | 2021 | Nature Communications | Multidisciplinary Sciences | 14.919 | Cohort |
| Fortes et al. [ | D + V | 2010 | European Journal of Cancer Prevention | Oncology | 2.497 | Case–control |
| Cust et al. [ | D + V | 2013 | BMC Cancer | Oncology | 4.430 | Case–control |
| Fang et al. [ | D + V | 2013 | PLOS ONE | Multidisciplinary Sciences | 3.240 | Multiple case–control studies |
| Davies et al. [ | D + V | 2015 | Cancer Epidemiology, Biomarkers and Prevention | Public, Environmental and Occupational Health | 4.254 | Multiple case–control |
| Vuong et al. [ | D + V | 2016 | JAMA Dermatology | Dermatology | 10.282 | Case–control |
| Cust et al. [ | D + V | 2018 | Journal of Investigative Dermatology | Dermatology | 8.551 | Case–control |
| Vuong et al. [ | D + V | 2019 | British Journal of Dermatology | Dermatology | 9.302 | Case–control |
Figure 1Empirical distribution function of the TRIPOD adherence score based on 42 studies addressing melanoma risk prediction models and their validation. Dashed lines indicate the median, as well as the proportions of studies that achieved a score of less than 50% and less than 75%.
Figure 2Applicability and reporting of TRIPOD components in the total group of studies (N = 42), in development studies (N = 35) and in development and validation studies (N = 7). Bright bars represent the percentage of studies for which the components were applicable. Dark bars represent the percentage of studies in which the TRIPOD component is fulfilled. * The subitems were rated as “not applicable” in all studies. (Subitem 10e does not apply to development studies, so in this case “all studies” means all development and external validation studies (N = 7)).
TRIPOD components reported in more than 90% and less than 10% of the studies. Completeness of reporting of the sub-/items is given as percentage. Additionally, the number of studies that adhered to the specific sub-/item (n) and the number of studies in which the sub-/item is applicable (N) are provided.
| Most Frequently Reported | % (n/N) | Least Reported Sub-/Items | % (n/N) | ||
|---|---|---|---|---|---|
| 3b | Specify the objectives, including whether the study describes the development or validation of the model or both | 97.6 | 7b | Report any actions to blind assessment of predictors for the outcome and other predictors | 7.1 |
| 4a | Describe the study design or source of data (e.g., randomized trial, cohort, or registry data), separately for the development and validation data sets, if applicable | 97.6 (41/42) | 1 | Identify the study as developing and/or validating a multivariable prediction model, the target population and the outcome to be predicted | 2.4 |
| 8 | Explain how the sample size was arrived at | 97.6 | 2 | Provide a summary of objectives, study design, setting, participants, sample size, predictors, outcome, statistical analysis, results and conclusions | 2.4 |
| 18 | Discuss any limitations of the study (such as non-representative sample, few events per predictor, missing data) | 95.2 (40/42) | 10b | Specify type of model, all model-building procedures (including any predictor selection) and method for internal validation | 2.4 |
| 19b | Give an overall interpretation of the results, considering objectives, limitations, results from similar studies and other relevant evidence | 95.2 (40/42) | 17 | If done, report the results from any model updating (e.g., model specification and model performance) | 0.0 |
| 3a | Explain the medical context (including whether diagnostic or prognostic) and rationale for developing or validating the multivariable prediction model, including references to existing models | 92.9 (39/42) | |||
Figure 3Relationship between TRIPOD adherence and publication year of studies. Red line represents predicted mean curve from a beta regression model based on 40 studies (two studies were excluded, see text).
Model adjusted mean TRIPOD overall adherence scores for each journal subject category using the mean pattern of other variables.
| Journal Subject Category | Model Adjusted Mean TRIPOD Overall Adherence Score in % |
|---|---|
| Dermatology | 62.4 |
| Oncology | 58.0 |
| Public, Environmental and Occupational Health | 52.4 |
| Medicine, General and Internal | 60.5 |
| Multidisciplinary Sciences | 51.2 |
| Other | 48.4 |
Figure 4Relationship between TRIPOD adherence and publication year of studies with journal subject categories added. N = 40 (two studies were excluded, see text).