| Literature DB >> 33842642 |
Liuqing Yang1,2, Qiang Wang1,2, Tingting Cui1,2, Jinxin Huang1,2, Naiyang Shi1,2, Hui Jin1,2.
Abstract
Evaluation of the validity and applicability of published prognostic prediction models for coronavirus disease 2019 (COVID-19) is essential, because determining the patients' prognosis at an early stage may reduce mortality. This study was aimed to utilize the transparent reporting of a multivariable prediction model for individual prognosis or diagnosis (TRIPOD) to report the completeness of COVID-19-related prognostic models and appraise its effectiveness in clinical practice. A systematic search of the Web of Science and PubMed was performed for studies published until August 11, 2020. All models were assessed on model development, external validation of existing models, incremental values, and development and validation of the same model. TRIPOD was used to assess the completeness of included models, and the completeness of each item was also reported. In total, 52 publications were included, including 67 models. Age, disease history, lymphoma count, history of hypertension and cardiovascular disease, C-reactive protein, lactate dehydrogenase, white blood cell count, and platelet count were the commonly used predictors. The predicted outcome was death, development of severe or critical state, survival time, and length-of-hospital stay. The reported discrimination performance of all models ranged from 0.361 to 0.994, while few models reported calibration. Overall, the reporting completeness based on TRIPOD was between 31% and 83% [median, 67% (interquartile range: 62%, 73%)]. Blinding of the outcome to be predicted or predictors were poorly reported. Additionally, there was little description on the handling of missing data. This assessment indicated a poorly-reported COVID-19 prognostic model in existing literature. The risk of over-fitting may exist with these models. The reporting of calibration and external validation should be given more attention in future research. 2021 Annals of Translational Medicine. All rights reserved.Entities:
Keywords: Coronavirus disease 2019 (COVID-19); prognostic model; transparent reporting of a multivariable prediction model for individual prognosis or diagnosis (TRIPOD)
Year: 2021 PMID: 33842642 PMCID: PMC8033387 DOI: 10.21037/atm-20-6933
Source DB: PubMed Journal: Ann Transl Med ISSN: 2305-5839
Figure 1The flowchart of literature research. The flow chart is made according to PRISMA (the Preferred Reporting Items for Systematic Reviews and Meta-Analysis).
Primary information of prognostic models
| No. | First author | Study region | Study design | Outcome | Sample size | Performance (discrimination) | Validation | |||
|---|---|---|---|---|---|---|---|---|---|---|
| Type of validation | Sample size | Performance | Calibration | |||||||
| 1 | Yuan | Wuhan, China | Retrospective | Death | 27 | 0.901 (0.873, 0.928) | None | None | None | No |
| 2 | Osborne | Veterans, United States | Retrospective | Death | 4,614 | 0.73 | Internal validation (randomly split) | 1,977 | Not reported‡ | No |
| 3 | Francone | Not reported | Retrospective | Death | 130 | 0.672 (0.647, 0.877) | None | None | None§ | No |
| 4 | Cozzi | Not reported | Retrospective | ICU admission† | 234 | ICC0.92 (0.88, 0.95) | None | None | None | No |
| 5 | Borghesi | Italy | Retrospective | Death | 302 | 0.853 | None | None | None | No |
| 6 | Wang | Wuhan, China | Retrospective | Death | 296 | 0.88 (0.80, 0.95) | External validation | 44 | 0.83 (0.75, 0.96) | No |
| 7 | Hong | Zhejiang, China | Retrospective | Prolonged length of stay in hospital | 75 | 0.848 (0.753, 0.944) | None | None | None | No |
| 8 | Yu | Wuhan, China | Retrospective | Death | 1,464 | 0.765 (0.725, 0.805) | None | None | None | No |
| 9 | Galloway | London, England | Not reported | Critical care admission and death | 578 | 0.757 (0.713, 0.805) | Internal validation (randomly split) | 579 | 0.712 (0.664, 0.759) | Yes |
| 10 | Liu | Wuhan, China | Retrospective | The development of severe/critical disease | 84 | 0.804 (0.702, 0.883) | External validation | 71 | 0.881 (0.782, 0.946) | Yes |
| 11 | Borghesi | Italy | Not reported | Death | 100 | Kw 0.82 (0.79, 0.86) | None | None | None | No |
| 12 | Liu | Shanghai, China | Retrospective | Severe-event-free survival | 134 | 0.78 (0.69, 0.88) | None | None | None | No |
| 13 | Yao | Wuhan, China | Retrospective | Death | 248 | 0.85 (0.77, 0.92) | None | None | None | No |
| 14 | Zhou | Sichuan, China | Retrospective | Development of severe COVID-19 | 366 | 0.863 (0.801, 0.925) | Internal validation (bootstrap) | Not reported | 0.839 | Yes |
| 15 | Liang | China | Retrospective | Development of critical illness | 1,590 | 0.88 (0.85, 0.91) | Internal validation (bootstrap)/external validation | Not reported/710 | 0.88 (0.85, 0.91)/0.88 (0.84, 0.93) | No |
| 16 | Dong | Wuhan, China | Retrospective | Survival time | 377 | 0.901 | Internal validation (randomly split) | 251 | 0.892 | Yes |
| 17 | Zheng | Hubei/Anhui, China | Retrospective | ICU admission, mechanical ventilation, or death | 166 | 0.82 (0.76, 0.88) | External validation | 72 | 0.89 (0.82, 0.96) | Yes |
| 18 | Zhang | Wuhan, China | Retrospective | Survival probability | 516 | 0.886 (0.873, 0.899) | External validation | 186 | 0.879 (0.856, 0.900) | Yes |
| Type of validation | Sample size | Performance | Calibration | |||||||
| 19 | Xiao | Hubei/Jiangxi, China | Retrospective | Severe state | 231 | 0.861 (0.800, 0.922) | Internal validation (randomly split)/external validation | 101/110 | 0.871 (0.769, 0.972)/0.826 (0.746, 0.907) | Yes |
| 20 | Wang | Wuhan, China | Retrospective | Death | 108 | 0.964 (0.909, 0.990) | None | None | None | No |
| 21 | Zheng | Zhejiang, China | Retrospective | Severe state | 141 | 0.821 (0.746, 0.896) | None | None | None | Yes |
| 22 | Wu | Wuhan, China | Retrospective | Moderately ill and severely/critically ill | 210 | 0.955 | Internal validation (randomly split) | 60 | 0.945 | No |
| 23 | Luo | Not reported | Retrospective | Death | 1,018 | 0.907 (0.886, 0.928) | None | None | None | Yes |
| 24 | Huang | Hubei, China | Retrospective | Disease progression in mild cases | 344 | 0.849 | None | None | None | No |
| 25 | Liu | Wuhan, China | Retrospective | Death | 336 | 0.994 (0.979, 0.999) | None | None | None | No |
| 26 | Hu | Wuhan, China | Retrospective | Death of severe or critical patients | 105 | 0.864 | None | None | None | No |
| 27 | Zhang | Wuhan, China | Retrospective | The death rate of critically patients in ICU | 136 | Not reported | None | None | None | No |
| 28 | Lorente-Ros | Not reported | Retrospective | Death | 770 | 0.775 | None | None | None | No |
| 29 | Myrstad | Oslo area, Norway | Prospective | Severe disease and in-hospital mortality | 66 | 0.786 (0.659, 0.913) | None | None | None | No |
| 30 | Liu | Beijing, China | Prospective | Development of critical illness. | 61 | 0.807 (0.676, 0.938) | External validation | 54 | 0.882 (0.778, 0.986) | Yes |
| 31 | Nguyen | Paris, French | Retrospective | Unfavorable outcome | 279 | 0.75 | None | None | None | Yes |
| 32 | Zhang | Beijing, China | Retrospective | Severity of the disease | 80 | 0.906 | External validation | 22 | 0.958 | No |
| 33 | Satici | Istanbul, Turkey | Retrospective | 30-day mortality | 681 | 0.92 (0.89, 0.94) | None | None | None | No |
| 34 | Pascual Gómez | Madrid, Spain | Retrospective | Death rate | 163 | 0.874 (0.816, 0.933) | None | None | None | No |
| 35 | Luo, | Wuhan, China | Retrospective | Death | 1115 | 0.955 (0.941, 0.970) | None | None | None | No |
| 36 | Bello-Chavolla | Mexican | Retrospective | 30-day death rate | 41,306 | 0.822 | Internal validation (randomly split) | 10,327 | 0.83 | No |
| Type of validation | Sample size | Performance | Calibration | |||||||
| 37 | Ji | Anhui/Beijing, China | Retrospective | Severe progression | 208 | 0.86 (0.81, 0.91) | Internal validation (bootstrap) | Not reported | Not reported | Yes |
| 38 | Zhao | New York City, United states | Retrospective | ICU admission and death | 454 | 0.87 (0.83, 0.92) | Internal validation | 187 | 0.74 (0.63, 0.85) | No |
| 39 | Luo | Wuhan, China | Not reported | Death or survival | 739 | 0.956 (0.928, 0.984) | None | None | None | No |
| 40 | Bi | Zhejiang, China | Retrospective | Occurrence of severe illness | 113 | 0.712 (0.610, 0.814) | External validation | 28 | Not reported | Yes |
| 41 | Zheng | Zhejiang, China | Retrospective | Rehabilitation duration | 90 | R2 0.361 | None | None | None | No |
| 42 | Liu | Wuhan, China | Retrospective | Critical progression | 88 | 0.971 (0.910, 0.995) | None | None | None | No |
| 43 | Gidari | Italy | Retrospective | ICU admission | 71 | 0.90 (0.82, 0.97) | None | None | None | No |
| 44 | Vultaggio | Florence, Italy | Retrospective | Clinical deterioration | 208 | 0.86 | None | None | None | Yes |
| 45 | Yang | Chongqing, China | Retrospective | Critical progression | 133 | 0.8842 | None | None | None | No |
| 46 | Wang | Wuhan, China | Retrospective | Death of critical patients | 104 | 0.893 (0.807, 0.98) | Internal validation (bootstrap) | Not reported | Not reported | No |
| 47 | Chen | China | Retrospective | Death | 1,590 | 0.91 (0.85, 0.97) | Internal validation (bootstrap) | Not reported | Not reported | Yes |
| 48 | Shang | Wuhan, China | Retrospective | The death of severe cases | 113 | 0.919 (0.870, 0.97) | External validation | 339 | 0.938 (0.902, 0.973) | Yes |
| 49 | Li | Shanghai, China | Retrospective/prospective | The development of severe disease | 322 | 0.92 (0.88, 0.95) | External validation | 317 | 0.92 (0.89, 0.95) | Yes |
| 50 | Zeng | Hunan, China | Retrospective | ICU admission | 461 | 0.835 (0.742, 0.929) | None | None | None | Yes |
| 51 | Gong | Guangzhou, China | Retrospective | Severe progression | 189 | 0.912 (0.846, 0.978) | Internal validation (3-fold cross-validation)/external validation | 165/18 | Not reported/0.853 (0.790, 0.916) | Yes |
| 52 | Shang | Wuhan, China | Retrospective | Severe progression | 443 | 0.774 | None | None | None | No |
†, ICU is the abbreviation of intensive care unit; ‡, not reported means the information cannot be extracted; §, none means this part is not appliable for this study.
Figure 2The reporting completeness of models in TRIPOD. Data are median [interquartile range (IQR)] and each point represents the completeness of one model; TRIPOD is the abbreviation of the transparent reporting of a multivariable prediction model for individual prognosis or diagnosis.
Figure 3Reporting of the items in TRIPOD. The combination of numbers and letters in the abscissa represents the items in TRIPOD; TRIPOD is the abbreviation of the transparent reporting of a multivariable prediction model for individual prognosis or diagnosis. NA is the abbreviation of not applicable and it means that the item does not apply to this type of models.