Literature DB >> 35175428

Deciphering specific miRNAs in brain tumors: a 5-miRNA signature in glioblastoma.

João Basso1,2, Marco G Paggi3, Ana Fortuna1,4, Carla Vitorino5,6, Rui Vitorino7,8,9.   

Abstract

MicroRNAs are endogenous non-coding RNAs with a marked impact on the development and progression of brain tumors. However, they commonly share different expression patterns in other types of tumors, thereby exhibiting lack of tissue specificity. Here, an integrative holistic analysis of microarray data is established for deciphering dysregulated miRNAs in glioblastoma, distinguishing them from eight other CNS tumors. The identification of dysregulated miRNAs was performed in a pool of 176 patients, 118 of which diagnosed with glioblastoma. Dysregulated miRNAs commonly expressed in glioblastoma were then discriminated from those co-expressed in other CNS tumors and further characterized. Overall, 21 miRNAs were found to be commonly dysregulated in glioblastoma. Notwithstanding, 16 miRNAs also exhibited a differential expression in at least one other CNS tumor. The remaining 5, specifically, hsa-miR-21-3p, hsa-miR-338-5p, hsa-miR-485-5p, hsa-miR-491-5p and hsa-miR-1290, were solely associated to glioblastoma. This signature is in-depth characterized, with the spotlight on tumor progression, invasion and patient survival. These five endogenous molecules, differentially expressed in glioblastoma, are thus suggested as potential therapeutic targets, modulating several genes involved in major signalling pathways, including MAPK/ERK, calcium, PI3K/AKT, mTOR and Wnt. In summary, these findings lay a foundation for further research on the expression and function of specific patterns of miRNAs expression in glioblastoma, providing reference for potential novel targets.
© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

Entities:  

Keywords:  Bioinformatics; CNS tumors; Datasets; Glioblastoma; Glioma; miRNA

Mesh:

Substances:

Year:  2022        PMID: 35175428     DOI: 10.1007/s00438-022-01866-6

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  57 in total

1.  The somatic genomic landscape of glioblastoma.

Authors:  Cameron W Brennan; Roel G W Verhaak; Aaron McKenna; Benito Campos; Houtan Noushmehr; Sofie R Salama; Siyuan Zheng; Debyani Chakravarty; J Zachary Sanborn; Samuel H Berman; Rameen Beroukhim; Brady Bernard; Chang-Jiun Wu; Giannicola Genovese; Ilya Shmulevich; Jill Barnholtz-Sloan; Lihua Zou; Rahulsimham Vegesna; Sachet A Shukla; Giovanni Ciriello; W K Yung; Wei Zhang; Carrie Sougnez; Tom Mikkelsen; Kenneth Aldape; Darell D Bigner; Erwin G Van Meir; Michael Prados; Andrew Sloan; Keith L Black; Jennifer Eschbacher; Gaetano Finocchiaro; William Friedman; David W Andrews; Abhijit Guha; Mary Iacocca; Brian P O'Neill; Greg Foltz; Jerome Myers; Daniel J Weisenberger; Robert Penny; Raju Kucherlapati; Charles M Perou; D Neil Hayes; Richard Gibbs; Marco Marra; Gordon B Mills; Eric Lander; Paul Spellman; Richard Wilson; Chris Sander; John Weinstein; Matthew Meyerson; Stacey Gabriel; Peter W Laird; David Haussler; Gad Getz; Lynda Chin
Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

Review 2.  MicroRNA nomenclature and the need for a revised naming prescription.

Authors:  Hikmet Budak; Reyyan Bulut; Melda Kantar; Burcu Alptekin
Journal:  Brief Funct Genomics       Date:  2015-07-06       Impact factor: 4.241

3.  TCPA v3.0: An Integrative Platform to Explore the Pan-Cancer Analysis of Functional Proteomic Data.

Authors:  Mei-Ju May Chen; Jun Li; Yumeng Wang; Rehan Akbani; Yiling Lu; Gordon B Mills; Han Liang
Journal:  Mol Cell Proteomics       Date:  2019-06-14       Impact factor: 5.911

4.  Emerging role of microRNA-21 in cancer.

Authors:  Yin-Hsun Feng; Chao-Jung Tsao
Journal:  Biomed Rep       Date:  2016-08-26

Review 5.  MicroRNA therapeutics.

Authors:  J A Broderick; P D Zamore
Journal:  Gene Ther       Date:  2011-04-28       Impact factor: 5.250

6.  Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma.

Authors:  Hua Dong; Li Luo; Shengjun Hong; Hoicheong Siu; Yanghua Xiao; Li Jin; Rui Chen; Momiao Xiong
Journal:  BMC Syst Biol       Date:  2010-11-29

Review 7.  Gliomas and the vascular fragility of the blood brain barrier.

Authors:  Luiz Gustavo Dubois; Loraine Campanati; Cassia Righy; Isabella D'Andrea-Meira; Tania Cristina Leite de Sampaio E Spohr; Isabel Porto-Carreiro; Claudia Maria Pereira; Joana Balça-Silva; Suzana Assad Kahn; Marcos F DosSantos; Marcela de Almeida Rabello Oliveira; Adriana Ximenes-da-Silva; Maria Celeste Lopes; Eduardo Faveret; Emerson Leandro Gasparetto; Vivaldo Moura-Neto
Journal:  Front Cell Neurosci       Date:  2014-12-12       Impact factor: 5.505

8.  UpSetR: an R package for the visualization of intersecting sets and their properties.

Authors:  Jake R Conway; Alexander Lex; Nils Gehlenborg
Journal:  Bioinformatics       Date:  2017-09-15       Impact factor: 6.937

9.  MiR-338-5p promotes metastasis of colorectal cancer by inhibition of phosphatidylinositol 3-kinase, catalytic subunit type 3-mediated autophagy pathway.

Authors:  Chien-An Chu; Chung-Ta Lee; Jenq-Chang Lee; Yi-Wen Wang; Ching-Tang Huang; Sheng-Hui Lan; Peng-Chan Lin; Bo-Wen Lin; Yu-Feng Tian; Hsiao-Sheng Liu; Nan-Haw Chow
Journal:  EBioMedicine       Date:  2019-04-12       Impact factor: 8.143

10.  The analysis of miRNA expression profiling datasets reveals inverse microRNA patterns in glioblastoma and Alzheimer's disease.

Authors:  Saverio Candido; Gabriella Lupo; Manuela Pennisi; Maria S Basile; Carmelina D Anfuso; Maria C Petralia; Giuseppe Gattuso; Silvia Vivarelli; Demetrios A Spandidos; Massimo Libra; Luca Falzone
Journal:  Oncol Rep       Date:  2019-06-28       Impact factor: 3.906

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  3 in total

1.  lncRNA H19 promotes glioblastoma multiforme development by activating autophagy by sponging miR-491-5p.

Authors:  Guo Wang; Xiaoyan Lin; Han Han; Hongxu Zhang; Xiaoli Li; Mei Feng; Chunming Jiang
Journal:  Bioengineered       Date:  2022-05       Impact factor: 6.832

Review 2.  miRNA in Molecular Diagnostics.

Authors:  Maja Matulić; Paula Gršković; Andreja Petrović; Valerija Begić; Suzana Harabajsa; Petra Korać
Journal:  Bioengineering (Basel)       Date:  2022-09-09

3.  The Network of miRNA-mRNA Interactions in Circulating T Cells of Patients Following Major Trauma - A Pilot Study.

Authors:  Cheng-Shyuan Rau; Pao-Jen Kuo; Hui-Ping Lin; Chia-Jung Wu; Yi-Chan Wu; Peng-Chen Chien; Ting-Min Hsieh; Hang-Tsung Liu; Chun-Ying Huang; Ching-Hua Hsieh
Journal:  J Inflamm Res       Date:  2022-09-22
  3 in total

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