Literature DB >> 26148500

MicroRNA nomenclature and the need for a revised naming prescription.

Hikmet Budak, Reyyan Bulut, Melda Kantar, Burcu Alptekin.   

Abstract

A central environment and interface for microRNA (miRNA) registry and repository and a general standardized framework for their systematic annotation was established over a decade ago. However, the numbers of experimentally and computationally identified miRNAs are swiftly accumulating, and new aspects of miRNA-mediated gene regulation are being revealed. Currently, it is of great significance that the annotation framework should be redefined to include newly discovered miRNA species such as the variants of mature miRNAs (isomiRNAs), and organellar miRNAs: cipomiRNAs and mitomiRNAs. It is also of great importance that key terminology referring to the novelty, evolutionary history or biogenesis of miRNAs, as well as the confidence of their identification are standardized in the literature and disseminated in a central miRNA registry. Here, we review the status of miRNA nomenclature, curation and critical points of need for a revision of miRNA nomenclature and terminology.
© The Author 2015. Published by Oxford University Press. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Keywords:  bona fide miRNAs; canonical miRNAs; cipomiRs; isomiRNAs; microRNAs; mitomiRs

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Year:  2015        PMID: 26148500     DOI: 10.1093/bfgp/elv026

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  33 in total

Review 1.  A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.

Authors:  Bastian Fromm; Tyler Billipp; Liam E Peck; Morten Johansen; James E Tarver; Benjamin L King; James M Newcomb; Lorenzo F Sempere; Kjersti Flatmark; Eivind Hovig; Kevin J Peterson
Journal:  Annu Rev Genet       Date:  2015-10-14       Impact factor: 16.830

2.  Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress.

Authors:  Bala Ani Akpinar; Melda Kantar; Hikmet Budak
Journal:  Funct Integr Genomics       Date:  2015-07-15       Impact factor: 3.410

Review 3.  Plant miRNAs: biogenesis, organization and origins.

Authors:  Hikmet Budak; B Ani Akpinar
Journal:  Funct Integr Genomics       Date:  2015-06-26       Impact factor: 3.410

4.  Characterization of miRNAs responsive to exogenous ethylene in grapevine berries at whole genome level.

Authors:  Fanggui Zhao; Chen Wang; Jian Han; Xudong Zhu; Xiaopeng Li; Xicheng Wang; Jinggui Fang
Journal:  Funct Integr Genomics       Date:  2016-09-30       Impact factor: 3.410

5.  MicroRNAs in model and complex organisms.

Authors:  Hikmet Budak; Baohong Zhang
Journal:  Funct Integr Genomics       Date:  2017-05       Impact factor: 3.410

Review 6.  Circulatory microRNAs: promising non-invasive prognostic and diagnostic biomarkers for parasitic infections.

Authors:  Hossein Ghalehnoei; Abouzar Bagheri; Mahdi Fakhar; Mohammad Amir Mishan
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2019-10-15       Impact factor: 3.267

7.  Characterization of miR061 and its target genes in grapevine responding to exogenous gibberellic acid.

Authors:  Mengqi Wang; Xin Sun; Chen Wang; Liwen Cui; Lide Chen; Chaobo Zhang; Lingfei Shangguan; Jinggui Fang
Journal:  Funct Integr Genomics       Date:  2017-02-28       Impact factor: 3.410

8.  High-throughput sequencing of small RNAs revealed the diversified cold-responsive pathways during cold stress in the wild banana (Musa itinerans).

Authors:  Weihua Liu; Chunzhen Cheng; Fanglan Chen; Shanshan Ni; Yuling Lin; Zhongxiong Lai
Journal:  BMC Plant Biol       Date:  2018-11-29       Impact factor: 4.215

9.  Wheat miRNA ancestors: evident by transcriptome analysis of A, B, and D genome donors.

Authors:  Burcu Alptekin; Hikmet Budak
Journal:  Funct Integr Genomics       Date:  2016-03-31       Impact factor: 3.410

Review 10.  A critical approach for successful use of circulating microRNAs as biomarkers in cardiovascular diseases: the case of hypertrophic cardiomyopathy.

Authors:  Dimitrios Ntelios; Elisavet Georgiou; Sofia Alexouda; Antigoni Malousi; Georgios Efthimiadis; Georgios Tzimagiorgis
Journal:  Heart Fail Rev       Date:  2021-03-03       Impact factor: 4.214

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