Literature DB >> 35169296

Specific expression and functions of circular RNAs.

Sema Misir1, Nan Wu1, Burton B Yang2.   

Abstract

In recent years, circular RNAs (circRNAs), a new class of RNA molecules characterized by their covalently closed circular structure, have become a new research paradigm in RNA biology. Many circRNAs are conserved among eukaryotes, localize in specific subcellular compartments, and play different biological roles. Accumulating evidence shows that circRNAs regulate a diversity of cellular processes by acting as miRNA sponges, anchors for circRNA binding proteins (cRBPs), transcriptional regulators, molecular scaffolds, and sources for translation of small proteins/peptides. The emergence of the biological functions of circRNAs has brought a new perspective to our understanding of cellular physiology and disease pathogenesis. Recent studies have shown that the expression of circRNAs is tissue- and cell type-specific and specifically regulated through development or disease progression, where they exert specific biological functions. However, the mechanisms underlying these remain largely unknown. A deeper understanding of how the specific expression of circRNAs is regulated to exert specific biological functions will enable the use of circRNA as a biomarker in clinical practice and the development of new therapeutic approaches. This review aims to summarize recent developments in circRNA biogenesis, functions, and molecular mechanisms. We also provide some specific circRNAs as examples to show their tissue-specific distribution and evaluate the possibility of applying circRNA technologies in molecular research and therapeutics.
© 2022. The Author(s), under exclusive licence to ADMC Associazione Differenziamento e Morte Cellulare.

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Year:  2022        PMID: 35169296      PMCID: PMC8901656          DOI: 10.1038/s41418-022-00948-7

Source DB:  PubMed          Journal:  Cell Death Differ        ISSN: 1350-9047            Impact factor:   12.067


  125 in total

Review 1.  Regulation of circRNA biogenesis.

Authors:  Ling-Ling Chen; Li Yang
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

2.  circRNA biogenesis competes with pre-mRNA splicing.

Authors:  Reut Ashwal-Fluss; Markus Meyer; Nagarjuna Reddy Pamudurti; Andranik Ivanov; Osnat Bartok; Mor Hanan; Naveh Evantal; Sebastian Memczak; Nikolaus Rajewsky; Sebastian Kadener
Journal:  Mol Cell       Date:  2014-09-18       Impact factor: 17.970

Review 3.  The expanding regulatory mechanisms and cellular functions of circular RNAs.

Authors:  Ling-Ling Chen
Journal:  Nat Rev Mol Cell Biol       Date:  2020-05-04       Impact factor: 94.444

4.  Circular RNAs in the Mammalian Brain Are Highly Abundant, Conserved, and Dynamically Expressed.

Authors:  Agnieszka Rybak-Wolf; Christin Stottmeister; Petar Glažar; Marvin Jens; Natalia Pino; Sebastian Giusti; Mor Hanan; Mikaela Behm; Osnat Bartok; Reut Ashwal-Fluss; Margareta Herzog; Luisa Schreyer; Panagiotis Papavasileiou; Andranik Ivanov; Marie Öhman; Damian Refojo; Sebastian Kadener; Nikolaus Rajewsky
Journal:  Mol Cell       Date:  2015-04-23       Impact factor: 17.970

Review 5.  The emerging role of circular RNAs in transcriptome regulation.

Authors:  S Huang; B Yang; B J Chen; N Bliim; U Ueberham; T Arendt; M Janitz
Journal:  Genomics       Date:  2017-06-26       Impact factor: 5.736

6.  Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.

Authors:  Jakub O Westholm; Pedro Miura; Sara Olson; Sol Shenker; Brian Joseph; Piero Sanfilippo; Susan E Celniker; Brenton R Graveley; Eric C Lai
Journal:  Cell Rep       Date:  2014-11-26       Impact factor: 9.423

7.  Detecting and characterizing circular RNAs.

Authors:  William R Jeck; Norman E Sharpless
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

8.  Circular RNA is expressed across the eukaryotic tree of life.

Authors:  Peter L Wang; Yun Bao; Muh-Ching Yee; Steven P Barrett; Gregory J Hogan; Mari N Olsen; José R Dinneny; Patrick O Brown; Julia Salzman
Journal:  PLoS One       Date:  2014-03-07       Impact factor: 3.240

9.  Cell-type specific features of circular RNA expression.

Authors:  Julia Salzman; Raymond E Chen; Mari N Olsen; Peter L Wang; Patrick O Brown
Journal:  PLoS Genet       Date:  2013-09-05       Impact factor: 5.917

Review 10.  The emerging landscape of circular RNA in life processes.

Authors:  Shibin Qu; Yue Zhong; Runze Shang; Xuan Zhang; Wenjie Song; Jørgen Kjems; Haimin Li
Journal:  RNA Biol       Date:  2016-08-11       Impact factor: 4.652

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  12 in total

1.  CircJag1 promotes apoptosis of ethylene thiourea-exposed anorectal malformations through sponging miR-137-3p by regulating Sox9 and suppressing Wnt/β-catenin pathway during the hindgut development of rat embryos.

Authors:  Si Ying Li; Chen Yi Wang; Xiao Gao Wei; Xiao Bing Tang; Zheng Wei Yuan; Yu Zuo Bai
Journal:  Cell Biol Toxicol       Date:  2022-08-05       Impact factor: 6.819

Review 2.  Circular RNAs modulate Hippo-YAP signaling: functional mechanisms in cancer.

Authors:  Javeria Qadir; Feiya Li; Burton B Yang
Journal:  Theranostics       Date:  2022-05-16       Impact factor: 11.600

Review 3.  LncRNAs and CircRNAs in cancer.

Authors:  Xin Yin; Huiran Lin; Lei Lin; Lei Miao; Jing He; Zhenjian Zhuo
Journal:  MedComm (2020)       Date:  2022-05-12

Review 4.  Context-Dependent Regulation of Gene Expression by Non-Canonical Small RNAs.

Authors:  Kinga Plawgo; Katarzyna Dorota Raczynska
Journal:  Noncoding RNA       Date:  2022-04-29

Review 5.  Circular RNAs Acting as miRNAs' Sponges and Their Roles in Stem Cells.

Authors:  Juan Xiao; Shija Joseph; Mengwei Xia; Feng Teng; Xuejiao Chen; Rufeng Huang; Lihong Zhai; Wenbin Deng
Journal:  J Clin Med       Date:  2022-05-20       Impact factor: 4.964

6.  The circular RNA circNlgnmediates doxorubicin-inducedcardiac remodeling and fibrosis.

Authors:  Jindong Xu; William W Du; Nan Wu; Feiya Li; Xiangmin Li; Yizhen Xie; Sheng Wang; Burton B Yang
Journal:  Mol Ther Nucleic Acids       Date:  2022-03-09       Impact factor: 8.886

7.  Circulating cell-free circRNA panel predicted tumorigenesis and development of colorectal cancer.

Authors:  Le Qi; Ying Pan; Min Tang; Xi Chen
Journal:  J Clin Lab Anal       Date:  2022-04-14       Impact factor: 3.124

Review 8.  Evolving Insights Into the Biological Function and Clinical Significance of Long Noncoding RNA in Glioblastoma.

Authors:  Kun Liu; Hong Chen; Yuanyuan Wang; Liping Jiang; Yi Li
Journal:  Front Cell Dev Biol       Date:  2022-04-21

9.  The potential of mecciRNA in hepatic stellate cell to regulate progression of nonalcoholic hepatitis.

Authors:  Boqiang Liu; Yuanshi Tian; Jing He; Qiuxia Gu; Binghan Jin; Hao Shen; Weiqi Li; Liang Shi; Hong Yu; Ge Shan; Xiujun Cai
Journal:  J Transl Med       Date:  2022-09-04       Impact factor: 8.440

10.  CircRNA-CREIT inhibits stress granule assembly and overcomes doxorubicin resistance in TNBC by destabilizing PKR.

Authors:  Xiaolong Wang; Tong Chen; Chen Li; Wenhao Li; Xianyong Zhou; Yaming Li; Dan Luo; Ning Zhang; Bing Chen; Lijuan Wang; Wenjing Zhao; Shanji Fu; Qifeng Yang
Journal:  J Hematol Oncol       Date:  2022-08-29       Impact factor: 23.168

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