Literature DB >> 25746834

Regulation of circRNA biogenesis.

Ling-Ling Chen1, Li Yang.   

Abstract

Unlike linear RNAs terminated with 5' caps and 3' tails, circular RNAs are characterized by covalently closed loop structures with neither 5' to 3' polarity nor polyadenylated tail. This intrinsic characteristic has led to the general under-estimation of the existence of circular RNAs in previous polyadenylated transcriptome analyses. With the advent of specific biochemical and computational approaches, a large number of circular RNAs from back-spliced exons (circRNAs) have been identified in various cell lines and across different species. Recent studies have uncovered that back-splicing requires canonical spliceosomal machinery and can be facilitated by both complementary sequences and specific protein factors. In this review, we highlight our current understanding of the regulation of circRNA biogenesis, including both the competition between splicing and back-splicing and the previously under-appreciated alternative circularization.

Keywords:  alternative circularization; back-splicing; circular RNA; circularization; complementary sequence; splicing

Mesh:

Substances:

Year:  2015        PMID: 25746834      PMCID: PMC4615371          DOI: 10.1080/15476286.2015.1020271

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  42 in total

1.  Exon circularization requires canonical splice signals.

Authors:  Stefan Starke; Isabelle Jost; Oliver Rossbach; Tim Schneider; Silke Schreiner; Lee-Hsueh Hung; Albrecht Bindereif
Journal:  Cell Rep       Date:  2014-12-24       Impact factor: 9.423

2.  Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Authors:  Andranik Ivanov; Sebastian Memczak; Emanuel Wyler; Francesca Torti; Hagit T Porath; Marta R Orejuela; Michael Piechotta; Erez Y Levanon; Markus Landthaler; Christoph Dieterich; Nikolaus Rajewsky
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

3.  Exon-intron circular RNAs regulate transcription in the nucleus.

Authors:  Zhaoyong Li; Chuan Huang; Chun Bao; Liang Chen; Mei Lin; Xiaolin Wang; Guolin Zhong; Bin Yu; Wanchen Hu; Limin Dai; Pengfei Zhu; Zhaoxia Chang; Qingfa Wu; Yi Zhao; Ya Jia; Ping Xu; Huijie Liu; Ge Shan
Journal:  Nat Struct Mol Biol       Date:  2015-02-09       Impact factor: 15.369

4.  circRNA biogenesis competes with pre-mRNA splicing.

Authors:  Reut Ashwal-Fluss; Markus Meyer; Nagarjuna Reddy Pamudurti; Andranik Ivanov; Osnat Bartok; Mor Hanan; Naveh Evantal; Sebastian Memczak; Nikolaus Rajewsky; Sebastian Kadener
Journal:  Mol Cell       Date:  2014-09-18       Impact factor: 17.970

5.  Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.

Authors:  Jakub O Westholm; Pedro Miura; Sara Olson; Sol Shenker; Brian Joseph; Piero Sanfilippo; Susan E Celniker; Brenton R Graveley; Eric C Lai
Journal:  Cell Rep       Date:  2014-11-26       Impact factor: 9.423

6.  Complementary sequence-mediated exon circularization.

Authors:  Xiao-Ou Zhang; Hai-Bin Wang; Yang Zhang; Xuhua Lu; Ling-Ling Chen; Li Yang
Journal:  Cell       Date:  2014-09-18       Impact factor: 41.582

7.  Short intronic repeat sequences facilitate circular RNA production.

Authors:  Dongming Liang; Jeremy E Wilusz
Journal:  Genes Dev       Date:  2014-10-03       Impact factor: 11.361

8.  Efficient backsplicing produces translatable circular mRNAs.

Authors:  Yang Wang; Zefeng Wang
Journal:  RNA       Date:  2014-12-01       Impact factor: 4.942

Review 9.  Circular RNAs: diversity of form and function.

Authors:  Erika Lasda; Roy Parker
Journal:  RNA       Date:  2014-12       Impact factor: 4.942

10.  Expanded identification and characterization of mammalian circular RNAs.

Authors:  Junjie U Guo; Vikram Agarwal; Huili Guo; David P Bartel
Journal:  Genome Biol       Date:  2014-07-29       Impact factor: 13.583

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  642 in total

1.  Circular RNA circHIPK3 modulates autophagy via MIR124-3p-STAT3-PRKAA/AMPKα signaling in STK11 mutant lung cancer.

Authors:  Xiuyuan Chen; Rui Mao; Wenmei Su; Xia Yang; Qianqian Geng; Chunfang Guo; Zhuwen Wang; Jun Wang; Laura A Kresty; David G Beer; Andrew C Chang; Guoan Chen
Journal:  Autophagy       Date:  2019-06-28       Impact factor: 16.016

2.  Microarray expression profile of circular RNAs and mRNAs in children with systemic lupus erythematosus.

Authors:  Shipeng Li; Junmei Zhang; Xiaohua Tan; Jianghong Deng; Yan Li; Yurong Piao; Chao Li; Wenxu Yang; Wenxiu Mo; Jiapeng Sun; Fei Sun; Tongxin Han; Jiang Wang; Weiying Kuang; Caifeng Li
Journal:  Clin Rheumatol       Date:  2019-01-09       Impact factor: 2.980

3.  The differential expression of novel circular RNAs in an acute lung injury rat model caused by smoke inhalation.

Authors:  Zhiqiang Ye; Xuhui Liu; Yuewu Yang; Xianling Zhang; Ting Yu; Shigeng Li; Yawei Feng; Gangjian Luo
Journal:  J Physiol Biochem       Date:  2017-11-29       Impact factor: 4.158

4.  Circbank: a comprehensive database for circRNA with standard nomenclature.

Authors:  Ming Liu; Qian Wang; Jian Shen; Burton B Yang; Xiangming Ding
Journal:  RNA Biol       Date:  2019-04-25       Impact factor: 4.652

5.  Circ_0114876 promoted IL-1β-induced chondrocyte injury by targeting miR-671/TRAF2 axis.

Authors:  Qiushi Wang; Simin Luo; Jie Yang; Jieruo Li; Songwei Huan; Guorong She; Zhengang Zha
Journal:  Biotechnol Lett       Date:  2021-01-06       Impact factor: 2.461

6.  Circular RNA circPIKfyve acts as a sponge of miR-21-3p to enhance antiviral immunity through regulating MAVS in teleost fish.

Authors:  Hui Su; Qing Chu; Weiwei Zheng; Renjie Chang; Wenya Gao; Lei Zhang; Tianjun Xu
Journal:  J Virol       Date:  2021-02-03       Impact factor: 5.103

7.  Characterization of circRNA-Associated-ceRNA Networks in a Senescence-Accelerated Mouse Prone 8 Brain.

Authors:  Shuai Zhang; Dina Zhu; Hong Li; Hejian Li; Chengqiang Feng; Wensheng Zhang
Journal:  Mol Ther       Date:  2017-06-29       Impact factor: 11.454

8.  Construction and analysis of circular RNA molecular regulatory networks in liver cancer.

Authors:  Shuangchun Ren; Zhuoyuan Xin; Yinyan Xu; Jianting Xu; Guoqing Wang
Journal:  Cell Cycle       Date:  2017-11-03       Impact factor: 4.534

Review 9.  Non-coding RNAs: the new central dogma of cancer biology.

Authors:  Phei Er Saw; Xiaoding Xu; Jianing Chen; Er-Wei Song
Journal:  Sci China Life Sci       Date:  2020-09-11       Impact factor: 6.038

10.  Circ_0008532 promotes bladder cancer progression by regulation of the miR-155-5p/miR-330-5p/MTGR1 axis.

Authors:  Liang Chen; Xiong Yang; Jun Zhao; Ming Xiong; Raya Almaraihah; Zhaohui Chen; Teng Hou
Journal:  J Exp Clin Cancer Res       Date:  2020-05-27
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