Literature DB >> 35145307

A roadmap to increase diversity in genomic studies.

Segun Fatumo1,2, Tinashe Chikowore3,4, Ananyo Choudhury3, Muhammad Ayub5, Alicia R Martin6,7, Karoline Kuchenbaecker5,8.   

Abstract

Two decades ago, the sequence of the first human genome was published. Since then, advances in genome technologies have resulted in whole-genome sequencing and microarray-based genotyping of millions of human genomes. However, genetic and genomic studies are predominantly based on populations of European ancestry. As a result, the potential benefits of genomic research-including better understanding of disease etiology, early detection and diagnosis, rational drug design and improved clinical care-may elude the many underrepresented populations. Here, we describe factors that have contributed to the imbalance in representation of different populations and, leveraging our experiences in setting up genomic studies in diverse global populations, we propose a roadmap to enhancing inclusion and ensuring equal health benefits of genomics advances. Our Perspective highlights the importance of sincere, concerted global efforts toward genomic equity to ensure the benefits of genomic medicine are accessible to all.
© 2022. Springer Nature America, Inc.

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Year:  2022        PMID: 35145307     DOI: 10.1038/s41591-021-01672-4

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   87.241


  50 in total

Review 1.  Going global by adapting local: A review of recent human adaptation.

Authors:  Shaohua Fan; Matthew E B Hansen; Yancy Lo; Sarah A Tishkoff
Journal:  Science       Date:  2016-10-07       Impact factor: 47.728

2.  Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America.

Authors:  Etienne Patin; Marie Lopez; Rebecca Grollemund; Paul Verdu; Christine Harmant; Hélène Quach; Guillaume Laval; George H Perry; Luis B Barreiro; Alain Froment; Evelyne Heyer; Achille Massougbodji; Cesar Fortes-Lima; Florence Migot-Nabias; Gil Bellis; Jean-Michel Dugoujon; Joana B Pereira; Verónica Fernandes; Luisa Pereira; Lolke Van der Veen; Patrick Mouguiama-Daouda; Carlos D Bustamante; Jean-Marie Hombert; Lluís Quintana-Murci
Journal:  Science       Date:  2017-05-05       Impact factor: 47.728

3.  A risk allele for focal segmental glomerulosclerosis in African Americans is located within a region containing APOL1 and MYH9.

Authors:  Giulio Genovese; Stephen J Tonna; Andrea U Knob; Gerald B Appel; Avi Katz; Andrea J Bernhardy; Alexander W Needham; Ross Lazarus; Martin R Pollak
Journal:  Kidney Int       Date:  2010-07-28       Impact factor: 10.612

4.  The Missing Diversity in Human Genetic Studies.

Authors:  Giorgio Sirugo; Scott M Williams; Sarah A Tishkoff
Journal:  Cell       Date:  2019-03-21       Impact factor: 41.582

5.  Discovery and fine-mapping of kidney function loci in first genome-wide association study in Africans.

Authors:  Segun Fatumo; Tinashe Chikowore; Robert Kalyesubula; Rebecca N Nsubuga; Gershim Asiki; Oyekanmi Nashiru; Janet Seeley; Amelia C Crampin; Dorothea Nitsch; Liam Smeeth; Pontiano Kaleebu; Stephen Burgess; Moffat Nyirenda; Nora Franceschini; Andrew P Morris; Laurie Tomlinson; Robert Newton
Journal:  Hum Mol Genet       Date:  2021-07-28       Impact factor: 6.150

6.  The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.

Authors:  Annalisa Buniello; Jacqueline A L MacArthur; Maria Cerezo; Laura W Harris; James Hayhurst; Cinzia Malangone; Aoife McMahon; Joannella Morales; Edward Mountjoy; Elliot Sollis; Daniel Suveges; Olga Vrousgou; Patricia L Whetzel; Ridwan Amode; Jose A Guillen; Harpreet S Riat; Stephen J Trevanion; Peggy Hall; Heather Junkins; Paul Flicek; Tony Burdett; Lucia A Hindorff; Fiona Cunningham; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

7.  Trans-ethnic study design approaches for fine-mapping.

Authors:  Jennifer L Asimit; Konstantinos Hatzikotoulas; Mark McCarthy; Andrew P Morris; Eleftheria Zeggini
Journal:  Eur J Hum Genet       Date:  2016-02-03       Impact factor: 4.246

8.  Genomic Risk Prediction of Coronary Artery Disease in 480,000 Adults: Implications for Primary Prevention.

Authors:  Michael Inouye; Gad Abraham; Christopher P Nelson; Angela M Wood; Michael J Sweeting; Frank Dudbridge; Florence Y Lai; Stephen Kaptoge; Marta Brozynska; Tingting Wang; Shu Ye; Thomas R Webb; Martin K Rutter; Ioanna Tzoulaki; Riyaz S Patel; Ruth J F Loos; Bernard Keavney; Harry Hemingway; John Thompson; Hugh Watkins; Panos Deloukas; Emanuele Di Angelantonio; Adam S Butterworth; John Danesh; Nilesh J Samani
Journal:  J Am Coll Cardiol       Date:  2018-10-16       Impact factor: 24.094

9.  The opportunity in African genome resource for precision medicine.

Authors:  Segun Fatumo
Journal:  EBioMedicine       Date:  2020-04-05       Impact factor: 8.143

10.  The mutational constraint spectrum quantified from variation in 141,456 humans.

Authors:  Konrad J Karczewski; Laurent C Francioli; Grace Tiao; Beryl B Cummings; Jessica Alföldi; Qingbo Wang; Ryan L Collins; Kristen M Laricchia; Andrea Ganna; Daniel P Birnbaum; Laura D Gauthier; Harrison Brand; Matthew Solomonson; Nicholas A Watts; Daniel Rhodes; Moriel Singer-Berk; Eleina M England; Eleanor G Seaby; Jack A Kosmicki; Raymond K Walters; Katherine Tashman; Yossi Farjoun; Eric Banks; Timothy Poterba; Arcturus Wang; Cotton Seed; Nicola Whiffin; Jessica X Chong; Kaitlin E Samocha; Emma Pierce-Hoffman; Zachary Zappala; Anne H O'Donnell-Luria; Eric Vallabh Minikel; Ben Weisburd; Monkol Lek; James S Ware; Christopher Vittal; Irina M Armean; Louis Bergelson; Kristian Cibulskis; Kristen M Connolly; Miguel Covarrubias; Stacey Donnelly; Steven Ferriera; Stacey Gabriel; Jeff Gentry; Namrata Gupta; Thibault Jeandet; Diane Kaplan; Christopher Llanwarne; Ruchi Munshi; Sam Novod; Nikelle Petrillo; David Roazen; Valentin Ruano-Rubio; Andrea Saltzman; Molly Schleicher; Jose Soto; Kathleen Tibbetts; Charlotte Tolonen; Gordon Wade; Michael E Talkowski; Benjamin M Neale; Mark J Daly; Daniel G MacArthur
Journal:  Nature       Date:  2020-05-27       Impact factor: 69.504

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  15 in total

1.  Including diverse and admixed populations in genetic epidemiology research.

Authors:  Amke Caliebe; Fasil Tekola-Ayele; Burcu F Darst; Xuexia Wang; Yeunjoo E Song; Jiang Gui; Ronnie A Sebro; David J Balding; Mohamad Saad; Marie-Pierre Dubé
Journal:  Genet Epidemiol       Date:  2022-07-16       Impact factor: 2.344

Review 2.  Cross-ancestry genomic research: time to close the gap.

Authors:  Elizabeth G Atkinson; Sevim B Bianchi; Gordon Y Ye; José Jaime Martínez-Magaña; Grace E Tietz; Janitza L Montalvo-Ortiz; Paola Giusti-Rodriguez; Abraham A Palmer; Sandra Sanchez-Roige
Journal:  Neuropsychopharmacology       Date:  2022-06-23       Impact factor: 8.294

Review 3.  Genetic Determinants in Airways Obstructive Diseases: The Case of Asthma Chronic Obstructive Pulmonary Disease Overlap.

Authors:  Aabida Saferali; Craig P Hersh
Journal:  Immunol Allergy Clin North Am       Date:  2022-06-30       Impact factor: 3.152

4.  Missing heritability found for height.

Authors:  Karoline Kuchenbaecker
Journal:  Nature       Date:  2022-10-12       Impact factor: 69.504

Review 5.  Pathophysiology of type 2 diabetes in sub-Saharan Africans.

Authors:  Julia H Goedecke; Amy E Mendham
Journal:  Diabetologia       Date:  2022-09-27       Impact factor: 10.460

Review 6.  Towards a global view of multiple sclerosis genetics.

Authors:  Huw R Morris; Ruth Dobson; Benjamin Meir Jacobs; Michelle Peter; Gavin Giovannoni; Alastair J Noyce
Journal:  Nat Rev Neurol       Date:  2022-09-08       Impact factor: 44.711

7.  Polygenic scores in biomedical research.

Authors:  Iftikhar J Kullo; Cathryn M Lewis; Michael Inouye; Alicia R Martin; Samuli Ripatti; Nilanjan Chatterjee
Journal:  Nat Rev Genet       Date:  2022-03-30       Impact factor: 59.581

Review 8.  Using human genetics to improve safety assessment of therapeutics.

Authors:  Keren J Carss; Aimee M Deaton; Alberto Del Rio-Espinola; Dorothée Diogo; Mark Fielden; Diptee A Kulkarni; Jonathan Moggs; Peter Newham; Matthew R Nelson; Frank D Sistare; Lucas D Ward; Jing Yuan
Journal:  Nat Rev Drug Discov       Date:  2022-10-19       Impact factor: 112.288

9.  Precision Medicine Needs to Think Outside the Box.

Authors:  Daphne O Martschenko; Jennifer L Young
Journal:  Front Genet       Date:  2022-04-26       Impact factor: 4.772

10.  Cutaneous and acral melanoma cross-OMICs reveals prognostic cancer drivers associated with pathobiology and ultraviolet exposure.

Authors:  Zdenko Herceg; Vinicius de Lima Vazquez; Akram Ghantous; Anna Luiza Silva Almeida Vicente; Alexei Novoloaca; Vincent Cahais; Zainab Awada; Cyrille Cuenin; Natália Spitz; André Lopes Carvalho; Adriane Feijó Evangelista; Camila Souza Crovador; Rui Manuel Reis
Journal:  Nat Commun       Date:  2022-07-15       Impact factor: 17.694

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