| Literature DB >> 35056486 |
Xinhua Qi1,2, Wenlong Yan1,2, Zhibei Cao1,2, Mingzhu Ding1,2, Yingjin Yuan1,2.
Abstract
Polyethylene terephthalate (PET) is a widely used plastic that is polymerized by terephthalic acid (TPA) and ethylene glycol (EG). In recent years, PET biodegradation and bioconversion have become important in solving environmental plastic pollution. More and more PET hydrolases have been discovered and modified, which mainly act on and degrade the ester bond of PET. The monomers, TPA and EG, can be further utilized by microorganisms, entering the tricarboxylic acid cycle (TCA cycle) or being converted into high value chemicals, and finally realizing the biodegradation and bioconversion of PET. Based on synthetic biology and metabolic engineering strategies, this review summarizes the current advances in the modified PET hydrolases, engineered microbial chassis in degrading PET, bioconversion pathways of PET monomers, and artificial microbial consortia in PET biodegradation and bioconversion. Artificial microbial consortium provides novel ideas for the biodegradation and bioconversion of PET or other complex polymers. It is helpful to realize the one-step bioconversion of PET into high value chemicals.Entities:
Keywords: artificial microbial consortia; bioconversion; biodegradation; polyethylene terephthalate
Year: 2021 PMID: 35056486 PMCID: PMC8779501 DOI: 10.3390/microorganisms10010039
Source DB: PubMed Journal: Microorganisms ISSN: 2076-2607
Figure 1PET metabolic pathways and conversion of high value chemicals. Enzymes implicated in the pathways, PedH: quinoprotein alcohol dehydrogenase; PedE: quinoprotein alcohol dehydrogenase; PedI: aldehyde dehydrogenase family protein; PP_0545: aldehyde dehydrogenase family protein; GlcDEF: glycolate oxidase; Gcl: glyoxylate carboligase; GlxR: tartronate semialdehyde reductase; PP_3178: glycerate kinase; Eno: Enolase; PykA: Pyruvate kinase; GlcB: malate synthase; AceA: isocitrate lyase; Hyi: Hydroxypyruvate isomerase; PduCDE: propane diol dehydratase; PduP: CoA-dependent propionaldehyde dehydrogenase; TphAabc: TPA 1,2-dioxygenase; TphB: 1,2-dihydroxy-3,5-cyclohexadiene-1,4-dicarboxylate dehydrogenase; PCDO: protocatechuate 3,4-dioxygenase; CMLE: β-carboxy-cis, cis-muconate lactonizing enzyme; CMD: β-carboxymuconolactone decarboxylase; ELH: enollactone hydrolase; TR: β-ketoadipate:succinyl-CoA transferase; TH: β-ketoadipyl-CoA thiolase; PhaA: acetyl-CoA acetyltransferase; PhaB: acetoacetyl-CoA reductase; PhaC: poly(3-hydroxyalkanoate) polymerase; PobA: p-hydroxybenzoate hydroxylase; AroY: PCA decarboxylase; OMT: catechol O-methyltransferase; PhKLMNOPQ: phenol hydroxylase; CatA: a catechol 1,2-dioxygenase originating; CatBC: Muconate cycloisomerase 1/Muconolactone Delta-isomerase; ER: Enoate reductase. Steps in PET degradation; EG metabolism, TPA metabolism, TCA cycle, and high value chemical synthesis are indicated by dark blue, green, orange, light blue, and red, respectively.
Engineered hydrolases for PET biodegradation.
| Strategy | Hydrolase | Source | Variant | Substract | pH | Temperature | Time | Effect 1 | References |
|---|---|---|---|---|---|---|---|---|---|
| Engineering the key binding sites | MHETase | F424Q/F424N | BHET | 7.5 | 30 °C | 19.25 h | Turnover rate: >0.12 s−1 | [ | |
| MHETase | W397A, F415H, H488A | MHET | 7.5 | 30 °C | 19.25 h | Turnover rates: 2.2-, 1.6-, and 1.15-fold, respectively | [ | ||
| MHETase | S416A/F424N, R411A/S419G/F424N | BHET | 7.5 | 30 °C | 19.25 h | Turnover rate: >0.12 s−1 (120-fold) | [ | ||
| PETase | S238F/W159H | PET of ~15% crystallinity | 7.2 | 30 °C | 96 h | Crystallinity loss: 4.13%; TPA release rate: 1.2-fold | [ | ||
| PETase | S238F/W159H | Semi-aromatic polyester PEF | 7.2 | 30 °C | 96 h | Crystallinity loss: 1.3%; FDCA release rate: 1.2-fold | [ | ||
| MHETase | F424N, F424V, F424I, R411K, R411K/F424N, R411K/F424V, R411K/F424I, R411K/S416A/F424I | BHET | 8.0 | 30 °C | 4 h | Activity: 3.9-, 3.0-, 3.4-, 1.7-, 8.7-, 10.5-, 11.1-, and 15.3-fold, respectively | [ | ||
| MHETase | R411K/S416A/F424I | PETaseS121A/D186H/R280A-treated PET films | 8.0 | 30 °C | 72 h | Activity: 2-fold | [ | ||
| PETase | Y58A, W130A, W130H, A180I, S185H | Drinking bottle | 9.0 | 30 °C | 48 h | Activity: 3.5-, 1.9-, 3.3-, 2.0-, and 2.3-fold, respectively | [ | ||
| PETase | R61A, L88F, I179F, Y58A | Amorphous PET films | 8.5 | 30 °C | 48 h | Activity: 1.4-, 2.1-, and 2.5-fold, respectively | [ | ||
| Tfu_0883 |
| Q132A/T101A, I218A | PET fabric (100% polyester) | 7.5 | 60 °C | 48 h | Productivity of TPA: 19.3 ± 0.1 mM (1.6-fold increase) and 15.4 ± 0.1 mM (1.3-fold increase), respectively | [ | |
| BurPL | H344S/F348I | PET powder/Goodfellow PET | 9.0 | 35 °C | 18 h | Productivity of the MHET and TPA: ~3-fold increase | [ | ||
| PbPL |
| H216S/F220I | PET powder/Goodfellow PET | 9.0 | 40 °C | 18 h | Productivity of the MHET and TPA: ~10-fold increase | [ | |
| CtPL |
| H210S/F214I | PET powder | 9.0 | 60 °C | 18 h | Productivity of the MHET: 23.12 ± 2.14 μM; Productivity of the TPA: 6.74 ± 1.21 μM | [ | |
| PET2 | Metagenomics analysis | H229S/F233I | PET powder | 9.0 | 50 °C | 18 h | Productivity of the TPA: 30.31 ± 0.13 μM | [ | |
| LCC | Leaf-branch compost | H218S/F222I | PET powder | 9.0 | 60 °C | 18 h | Productivity of the MHET: ~900 μM; Productivity of the TPA: ~450 μM | [ | |
| TfCut2 | H185S/F189I | PET powder | 9.0 | 60 °C | 18 h | Productivity of the MHET: ~120 μM; Productivity of the TPA: ~80 μM | [ | ||
| FsC |
| L81A | PET fibers | 7.5 | 37 °C | 24 h | Activity: 5-fold increase | [ | |
| Cut190 | I224A/Q138A | BHET | 8.2 | 37 °C | Catalytic activity: 150 ± 0.2 s−1 | [ | |||
| PETase | R280A | Commercial PET films | 9.0 | 30 °C | 18 h/36 h | Activity: increased by 22.4% in 18 h and 32.4% in 36 h | [ | ||
| PE-H |
| Y250S | Amorphous PET films | 7.4 | 30 °C | 48 h | Productivity of MHET: >5 mg/L | [ | |
| PE-H |
| Y250S | Commercial single use bottle | 7.4 | 30 °C | 48 h | Productivity of MHET: >0.12 mg/L | [ | |
| Improving the stability | LCC | Leaf-branch compost | LCC-G | PET films of 7% crystallinity | 8.0 | 70 °C | 48 h | Weight loss: ~95% | [ |
| Cut190 | S226P/R228S | Amorphous PET films | 8.2 | 63 °C | 3 d | Weight loss: 14% for PET-GF and 27% for PET-S | [ | ||
| TfCut2 |
| D174R, D204R, E253R | Low crystallinity PET films | 8.5 | 65 °C | 48 h | Weight loss: 6.9 ± 0.0%, 11.3 ± 0.3%, and 10.1 ± 0.3%, respectively | [ | |
| LCC | Leaf-branch compost | F243I/D238C/S283C/Y127G | Post-consumer colored-flake PET waste | 8.0 | 72 °C | 9.3 h | Degradation rate: 90%; Productivity of TPA: 16.7 g·L−1·h−1 | [ | |
| LCC | Leaf-branch compost | F243W/D238C/S283C/Y127G | Post-consumer colored-flake PET waste | 8.0 | 72 °C | 10.5 h | Degradation rate: 90%; Productivity of TPA: 16.7 g·L−1·h−1 | [ | |
| PETase | S214H/I168R/W159H/S188Q/R280A/A180/G165A/Q119Y/L117/T140D | PET films of 49.2% crystallinity | 9.0 | 40 °C | 10 d | Activity: 400-fold | [ | ||
| Est119 | A68V/S219P | p-nitrophenyl butyrate | 7.0 | 37 °C | 16 h | Activity: 50-fold increase | [ | ||
| TfCut2 |
| D204C/E253C/D174R | Low crystallinity PET films | 8.0 | 70 °C | 48 h | Weight loss: 25.0 ± 0.8% (WT: 0.3 ± 0.1%) | [ | |
| TfCut2 | G62A/I213S | Amorphous PET films | 8.0 | 65 °C | 50 h | Weight loss: 42% (2.7-fold) | [ | ||
| Cut190 | Q138A/D250C-E296C/Q123H/N202H | Microfiber amorphous PET | 8.5 | 70 °C | 3 d | Degradation rate: > 30% | [ | ||
| PETase | S121E/D186H/R280A, S121D/D186H, S121E/D186H | Commercial PET films | 9.0 | 40 °C | 24 h | Activity: 9.1-, 3.4-, and 4.5-fold, respectively | [ | ||
| PETase | S121E/D186H/R280A, S121D/D186H, S121E/D186H | Commercial PET films | 9.0 | 40 °C | 72 h | Activity: 13.9-, 4.4-, and 6.0-fold, respectively | [ | ||
| PETase | S242T, N246D, S121E/D186H/S242T/N246D | Bottle-grade PET films | 9.0 | 37 °C | 24 h | Activity: 2.5-, 2.6-, and 58-fold, respectively | [ | ||
| Cbotu_EstA |
| del71Cbotu_EstA | Amorphous PET films | 7.0 | 50 °C | 120 h | Activity: > 8-fold | [ | |
| Increasing the substrate accessibility | PETase | S93M, W159F, N241F | L-naphthyl butyrate | 8.0 | 30 °C | Activity: 2.5-, 4.3-, and 3.3-fold, respectively | [ | ||
| Thc_Cut1 |
| Fusion to CBM | Amorphous PET films | 7.0 | 50 °C | 72 h | Productivity of TPA and MHET: 1.7 mol/mol (WT: 1.2 mol/mol) | [ | |
| Thc_Cut1 |
| Fusion to CBM | Amorphous PET films | 7.0 | 50 °C | 72 h | Productivity of TPA and MHET: 4.5 mol/mol (WT: 1.2 mol/mol) | [ | |
| Thc_Cut1 |
| Fusion to HFB4 | Amorphous PET films | 7.0 | 50 °C | 24 h | Degradation rate: >16-fold | [ | |
| Thc_Cut1 |
| Fusion to HFB7 | Amorphous PET films | 7.0 | 50 °C | 24 h | Degradation rate: >16-fold | [ | |
| PETase | R53E | Low crystallinity PET films | 8.0, 9.0 | 30 °C | Degradation rate: >0.2 nmol/min−1cm−2 | [ | |||
| TfCut2 | G62A/F209A | Low crystallinity PET films | 9.0 | 65 °C | 30 h | Degradation rate: 97 ± 1.8% | [ | ||
| Reducing the interaction between enzymes and products | HiC |
| Non-carbonated mineral water bottles | 7.0 | 50 °C | 14 d | Degradation rate: 7.7-fold increase | [ | |
| TfCut2 | G62A/I213S | Amorphous PET films | 8.0 | 65 °C | 50 h | Weight loss: 42% (2.7-fold) | [ | ||
| TfCut2 | TfCa-TfCut2 | Amorphous PET films | 8.0 | 60 °C | 24 h | Productivity: increased by 91% | [ | ||
| LCC | Leaf-branch compost | TfCa-LCC | Amorphous PET films | 8.0 | 60 °C | 24 h | Total products: increased by 104% | [ |
1 All multiples without explanation are compared to wild-type (WT).
Engineered microbial chassis for PET biodegradation.
| Organism | Strain | Hydrolase | Strategy | Signal Peptide | Reaction Temperature | Substrate | Effects | Ref. |
|---|---|---|---|---|---|---|---|---|
| Bacteria | BhrPETase | Overexpression of molecular chaperones (△ | AprE | 70 °C | Amorphous PET films | Expression titer: 0.66 g/L; | [ | |
| LCC | Expression titer: 0.89 g/L | |||||||
| PETase | Selection of signal peptides | SPLamB | 30 °C | Commercial PET films | Expression titer: 6.2 mg/L; | [ | ||
| PETase | Selection and random mutagenesis of signal peptides | PM3 (Evolved PelB, G58A) | 30 °C | BHET | Enzymatic activity: 1.7-fold more than PelB | [ | ||
| PET powder/ | Enzymatic activity: produced 1117 μM MHET and TPA (2.1-fold more than PelB) for 18 h | |||||||
| Amorphous PET films | Enzymatic activity: obvious morphological changes and pores appeared for 168 h | |||||||
| PETase | Signal peptide modification | PelB modified by enhancer B1 (MERACVAV) | 30 °C | Amorphous PET films | 62-fold more excretion than PelB | [ | ||
| Fusion hydrophobin (HFBII) | MHET/TPA: 2.7-fold increase for 42 h | |||||||
| PETase | Selection of signal peptides; Delete Tat translocases | SPPETase | 30 °C | Amorphous PET films | 3.8-fold more excretion than not deleted Tat translocases; Expression titer: 15 mg/L for 20 h; | [ | ||
| PETase | Selection of signal peptides; Promoter optimization (P43 promoter) | SPamy | 28 °C | PET films | Pores and serious corrosion appeared for 36 h | [ | ||
|
| LCC | Thermophilic whole-cell degradation system | Signal peptide from exoglucanase Cel48S | 60 °C | Commercial PET films | Soluble monomer feedstocks: >30 mg (60%) for 14 d | [ | |
| Fungi | PETase | Selection of signal peptides | SPLIP2 | 30 °C | BHET | 3.68 mM BHET was degraded for 1 h | [ | |
|
| PETase | Surface display; Whole-cell biocatalyst | ND | 30 °C | Commercial PET bottles | Enzymatic activity: 36-fold increase | [ | |
| Marine microalgae |
| PETaseR280A | Fusion proteins and localization | Alkaline phosphatase (AP) | 21 °C | Commercial PET beverage bottle | Almost all MHET was converted into TPA for 10 d | [ |
| PETaseR280A | Cell lysis catalysis | ND | 30 °C | Commercial PET beverage bottle | Many holes and dents appeared and TPA was detected for 4 weeks | [ |
Figure 2Artificial microbial consortia for PET biodegradation and bioconversion.