| Literature DB >> 35053018 |
Ivana Škrlec1, Jasminka Talapko1, Snježana Džijan1,2, Vera Cesar1,3, Nikolina Lazić1, Hrvoje Lepeduš1,4.
Abstract
Metabolic syndrome (MetS) is a combination of cardiovascular risk factors associated with type 2 diabetes, obesity, and cardiovascular diseases. The circadian clock gene polymorphisms are very likely to participate in metabolic syndrome genesis and development. However, research findings of the association between circadian rhythm gene polymorphisms and MetS and its comorbidities are not consistent. In this study, a review of the association of circadian clock gene polymorphisms with overall MetS risk was performed. In addition, a meta-analysis was performed to clarify the association between circadian clock gene polymorphisms and MetS susceptibility based on available data. The PubMed and Scopus databases were searched for studies reporting the association between circadian rhythm gene polymorphisms (ARNTL, BMAL1, CLOCK, CRY, PER, NPAS2, REV-ERBα, REV-ERBβ, and RORα) and MetS, and its comorbidities diabetes, obesity, and hypertension. Thirteen independent studies were analyzed with 17,381 subjects in total. The results revealed that the BMAL1 rs7950226 polymorphism was associated with an increased risk of MetS in the overall population. In contrast, the CLOCK rs1801260 and rs6850524 polymorphisms were not associated with MetS. This study suggests that some circadian rhythm gene polymorphisms might be associated with MetS in different populations and potentially used as predictive biomarkers for MetS.Entities:
Keywords: circadian clock genes; hypertension; metabolic syndrome; obesity; type 2 diabetes mellitus
Year: 2021 PMID: 35053018 PMCID: PMC8773381 DOI: 10.3390/biology11010020
Source DB: PubMed Journal: Biology (Basel) ISSN: 2079-7737
Figure 1Flowchart of the systematic review on metabolic syndrome.
Characteristics of studies included in the meta-analysis.
| First Author | Year | Country | Ethnicity | Study Type | Risk Factor | Population Type | Age Cases | Age Controls | Case | Control | Male (%) | Genotyping Method | Tested Genes | SNPs |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Monteleone et al. [ | 2008 | Italy | Caucasian | Case-control | Obesity | general | 38.4 ± 10.9 | 26.1 ± 4.6 | 192 | 92 | 14.79% | RFLP-PCR | CLOCK | rs1801260 |
| Sookoian et al. [ | 2008 | Brazil | Hispanic | Cross-sectional | Obesity | general | 37.55 ± 0.45 | 32.66 ± 0.29 | 391 | 715 | 0.00% | PCR | CLOCK | rs1554483 |
| Hu et al. [ | 2010 | China | Asian | Case-control | T2DM | general | 60.33 ± 12.94 | 50.10 ± 14.27 | 3410 | 3412 | 47.42% | MassArray | CRY2 | rs11605924 |
| Galbete et al. [ | 2012 | Spain | Hispanic | Cross-sectional | Obesity | general | 70 ± 6 | 67 ± 5 | 532 | 371 | 72.76% | real-time PCR | CLOCK | rs1801260 |
| Kelly et al. [ | 2012 | UK/Pakistan | Asian | Case-control | T2DM | general | 55.94 ± 11.88 | 55.8 ± 11.28 | 1732 | 1780 | 49.32% | real-time PCR | BMAL1 | rs11022775 |
| Karthikeyan et al. [ | 2014 | India | Asian | Case-control | T2DM | general | 50.7 ± 10.3 | 49.9 ± 9.1 | 302 | 330 | 58.23% | PCR | PER3 | 4/5–VNTR |
| Kolomeichuk et al. [ | 2014 | Russia | Caucasian | Cross-sectional | Hypertension | general | 51.9 ± 6.9 | 50.8 ± 8.1 | 434 | 435 | 48.33% | RFLP-PCR | BMAL1 | rs6486121 |
| Ruano et al. [ | 2014 | Spain | Hispanic | Cross-sectional | Obesity | general | 64.33 ± 9.0 | 62.7 ± 8.9 | 779 | 418 | 40.10% | real-time PCR | REV-ERBα | rs939347 |
| Ye et al. [ | 2016 | China | Asian | Cross-sectional | Obesity | general | 52.09 ± 8.22 | 52.09 ± 8.21 | 260 | 260 | 48.85% | MassArray | CLOCK | rs10002541 |
| Zhang et al. [ | 2016 | China | Asian | Case-control | T2DM | hospital | 57.37 ± 11.28 | 58.26 ± 10.51 | 427 | 408 | 51.26% | SNaPshot | RORα | rs17270188 |
| Li et al. [ | 2020 | China | Asian | Cross-sectional | Insuline resistance | general | 54 ± 13.81 | 53.10 ± 11.27 | 103 | 231 | 57.80% | sqeuncing | CLOCK | rs1801260 |
| Tokat et al. [ | 2020 | Turkey | Caucasian | Case-control | T2DM | general | 59.2 ± 1.3 | 59.0 ± 3.0 | 42 | 66 | 42.59% | NGS | REV-ERBα | chr17:38253751T > C |
| Guimarães de Azevedo et al. [ | 2021 | Brazil | Caucasian | Case-control | Obesity | hospital | 42.69 ± 15.85 | 54.5 ± 21.2 | 122 | 137 | 25.10% | real-time PCR | PER3 | rs707467 |
Allele and genotype frequency on the circadian rhythm SNPs.
| First Author | Tested Genes | SNPs | MAF Allele | MAF Cases | MAF CTRL | Wild Homozygote CTRL | Heterozygote CTRL | Variant Homozygote CTRL | Wild Homozygote Cases | Heterozygote Cases | Variant Homozygote Cases | HWE | Included in Meta-Analysis |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Monteleone 2008 | CLOCK | rs1801260 T > C | C | 0.291 | 0.288 | 46 | 39 | 7 | 103 | 68 | 21 | 0.75 | Yes |
| Sookoian 2008 | CLOCK | rs1554483 C > G | G | 0.465 | 0.408 | 251 | 337 | 123 | 111 | 192 | 86 | 0.58 | No a |
| rs11932595 A > G | G | 0.651 | 0.637 | 93 | 323 | 294 | 48 | 173 | 168 | 0.77 | No a | ||
| rs4580704 C > G | G | 0.711 | 0.678 | 72 | 303 | 333 | 35 | 146 | 205 | 0.8 | No a | ||
| rs6843722 A > C | C | 0.432 | 0.382 | 273 | 322 | 112 | 123 | 192 | 73 | 0.29 | No a | ||
| rs6850524 G > C | C | 0.662 | 0.606 | 100 | 306 | 280 | 47 | 146 | 186 | 0.27 | Yes | ||
| rs4864548 G > A | A | 0.457 | 0.404 | 248 | 336 | 121 | 111 | 191 | 83 | 0.69 | No a | ||
| Hu 2010 | CRY2 | rs11605924 C > A | A | 0.245 | 0.230 | 181 | 1210 | 2021 | 205 | 1261 | 1944 | 0.99 | No a |
| Galbete 2012 | CLOCK | rs1801260 T > C | C | 0.305 | 0.273 | 181 | 154 | 36 | 278 | 217 | 37 | 0.69 | Yes |
| Kelly 2012 | BMAL1 | rs11022775 C > T | T | 0.19 | 0.16 | 1256 | 478 | 46 | 1136 | 533 | 63 | 0.95 | No a |
| rs7950226 G > A | A | 0.5 | 0.46 | 519 | 884 | 377 | 433 | 866 | 433 | 0.99 | Yes | ||
| CLOCK | rs11133373 C > G | G | 0.4 | 0.38 | 684 | 839 | 257 | 624 | 831 | 277 | 0.99 | No a | |
| CRY1 | rs12315175 T > C | C | 0.06 | 0.07 | 1540 | 232 | 9 | 1530 | 195 | 6 | 0.93 | No a | |
| CRY2 | rs2292912 G > C | C | 0.25 | 0.27 | 949 | 702 | 130 | 974 | 650 | 108 | 0.99 | No a | |
| NPAS2 | rs1369481 C > T | T | 0.23 | 0.24 | 1028 | 649 | 103 | 1027 | 613 | 92 | 0.97 | No a | |
| rs17024926 T > C | C | 0.29 | 0.32 | 823 | 775 | 182 | 873 | 713 | 146 | 0.98 | No a | ||
| rs895521 C > T | T | 0.14 | 0.15 | 1286 | 454 | 40 | 1281 | 417 | 34 | 0.99 | No a | ||
| PER1 | rs2289591 C > A | A | 0.17 | 0.14 | 1316 | 429 | 35 | 1193 | 489 | 50 | 0.99 | No a | |
| rs885747 G > C | C | 0.23 | 0.29 | 897 | 733 | 150 | 1027 | 613 | 92 | 0.99 | No a | ||
| PER2 | rs7602358 T > G | G | 0.15 | 0.16 | 1256 | 478 | 46 | 1251 | 442 | 39 | 0.95 | No a | |
| PER3 | rs1012477 G > C | C | 0.05 | 0.05 | 1606 | 169 | 4 | 1563 | 165 | 4 | 0.84 | No a | |
| Karthikeyan 2014 | PER3 | VNTR–4/5 | 5- | 0.43 | 0.35 | 136 | 155 | 39 | 102 | 143 | 57 | 0.61 | No a |
| Kolomeichuk 2014 | BMAL1 | rs6486121 T > C | C | 0.479 | 0.451 | 135 | 204 | 96 | 117 | 217 | 100 | 0.054 | No a |
| CLOCK | rs1801260 T > C | C | 0.419 | 0.310 | 209 | 187 | 39 | 143 | 213 | 78 | 0.76 | Yes | |
| rs4865010 T > G | T | 0.472 | 0.629 | 187 | 170 | 78 | 139 | 139 | 156 |
| No a,b | ||
| rs34789226 T > C | T | 0.41 | 0.531 | 109 | 244 | 83 | 87 | 178 | 169 |
| No a,b | ||
| rs3736544 G > A | G | 0.449 | 0.409 | 109 | 139 | 187 | 126 | 135 | 174 |
| No a,b | ||
| Ruano 2014 | REV-ERBα | rs939347 G > A | A | 0.207 | 0.199 | 261 | 146 | 10 | 494 | 241 | 41 |
| No a,b |
| rs2071427 C > T | T | 0.237 | 0.25 | 235 | 157 | 26 | 453 | 274 | 48 | 0.97 | No a | ||
| Ye 2016 | CLOCK | rs10002541 T > C | C | 0.271 | 0.335 | 117 | 112 | 31 | 134 | 104 | 17 | 0.59 | No a |
| rs6850524 G > C | C | 0.268 | 0.322 | 117 | 112 | 26 | 134 | 104 | 16 | 0.92 | Yes | ||
| CRY1 | rs10861688 C > T | T | 0.271 | 0.311 | 126 | 102 | 29 | 133 | 106 | 16 | 0.23 | No a | |
| Zhang 2016 | RORα | rs17270188 G > A | A | 0.448 | 0.461 | 93 | 190 | 125 | 94 | 195 | 138 | 0.2 | No a |
| rs1898413 G > A | A | 0.164 | 0.156 | 10 | 107 | 291 | 14 | 112 | 301 | 0.96 | No a | ||
| rs11638541 T > C | C | 0.115 | 0.105 | 327 | 76 | 5 | 336 | 84 | 7 | 0.81 | No a | ||
| rs8033552 G > A | A | 0.177 | 0.164 | 14 | 106 | 288 | 17 | 117 | 193 | 0.28 | No a | ||
| rs10851685 A > T | T | 0.294 | 0.191 | 13 | 130 | 265 | 26 | 156 | 245 | 0.54 | No a | ||
| rs8041381 A > G | G | 0.144 | 0.138 | 299 | 105 | 4 | 310 | 111 | 6 | 0.11 | No a | ||
| rs340002 G > A | A | 0.358 | 0.346 | 43 | 196 | 169 | 51 | 204 | 172 | 0.21 | No a | ||
| rs340023 T > C | C | 0.381 | 0.362 | 56 | 183 | 169 | 68 | 189 | 170 | 0.57 | No a | ||
| rs28724570 C > T | T | 0.498 | 0.534 | 90 | 200 | 118 | 107 | 215 | 105 | 0.76 | No a | ||
| Li 2020 | BMAL1 | rs7950226 G > A rs1801260 T > C | A | 0,45 | 0,35 | 64 | 126 | 41 | 45 | 45 | 14 | 0.12 | Yes |
| Tokat 2020 | REV-ERBα | chr17:38253751T > C | C | 0.31 | 0.288 | 28 | 38 | 0 | 16 | 26 | 0 |
| No a,b |
| rs72836608 C > A | A | 0.321 | 0.295 | 33 | 6 | 27 | 19 | 4 | 19 |
| No a,b | ||
| rs2314339 C > T | T | 0.19 | 0.212 | 40 | 2 | 24 | 28 | 2 | 12 |
| No a,b | ||
| rs2102928 C > T | T | 0.357 | 0.356 | 26 | 7 | 33 | 17 | 5 | 20 |
| No a,b | ||
| REV-ERBβ | chr3:24003765 A > G | G | 0.143 | 0.129 | 47 | 17 | 0 | 30 | 12 | 0 | 0.22 | No a | |
| rs924403442 G > T | T | 0.25 | 0.288 | 28 | 38 | 0 | 21 | 21 | 0 |
| No a,b | ||
| Guimarães de Azevedo 2021 | PER3 | rs707467 A > C | C | 0.188 | 0.236 | 69 | 48 | 5 | 78 | 34 | 5 | 0.34 | No a |
| rs228697 C > G | G | 0.058 | 0.041 | 115 | 8 | 1 | 107 | 14 | 0 | 0.06 | No a | ||
| rs228729 C > T | T | 0.379 | 0.293 | 65 | 43 | 14 | 43 | 63 | 14 | 0.11 | No a |
MAF—minor allele frequency; CTRL—Controls; HWE—Hardy–Weinberg equilibrium; italic HWE p values are statistically significant; a—Excluded due to the insufficient number of the studies; b—excluded due to departure from the HWE in the control group.
Meta-analysis results of the BMAL1 rs7950226 and CLOCK rs1801260 and rs6850524 polymorphisms and MetS risk.
| Comparison | SNP | Test of Association | Test of Heterogeneity | |||
|---|---|---|---|---|---|---|
| OR (95% CI) |
| I2 | Q |
| ||
|
| rs7950226 | |||||
| Allelic model | G vs. A | 0.79 (0.62–1.00) | 0.047 | 54% | 2.18 | 0.140 |
| Dominant model | GG + GA vs. AA | 0.74 (0.54–1.02) | 0.680 | 34% | 1.512 | 0.217 |
| Recessive model | GG vs. GA + AA | 0.75 (0.58–0.98) | 0.037 | 34% | 1.53 | 0.216 |
|
| rs1801260 | |||||
| Allelic model | T vs. C | 1.00 (0.61–1.63) | 0.506 | 94% | 48.19 | <0.001 |
| Dominant model | TT + TC vs. CC | 0.99 (0.52–1.89) | 0.797 | 80% | 15.03 | 0.002 |
| Recessive model | TT vs. TC + CC | 0.99 (0.52–1.83) | 0.548 | 93% | 42.35 | <0.001 |
|
| rs6850524 | |||||
| Allelic model | G vs. C | 1.00 (0.61–1.63) | 0.96 | 89% | 9.24 | 0.002 |
| Dominant model | GG + CG vs. CC | 0.99 (0.52–1.89) | 0.96 | 74% | 3.98 | 0.046 |
Publication bias was assessed by Begg’s and Egger’s tests.
| Association | Begg’s Test | Egger’s Test | ||
|---|---|---|---|---|
| 1.69 | 0.089 | 2.24 | 0.154 | |
| Allelic model | 1.02 | 0.308 | 1.33 | 0.315 |
| Dominant model | 1.02 | 0.308 | 1.45 | 0.284 |
| Recessive model | 0.339 | 0.734 | 1.08 | 0.393 |