| Literature DB >> 35042386 |
Richard M Gunner1,2, Rory P Wilson1, Mark D Holton1, Phil Hopkins1, Stephen H Bell3, Nikki J Marks3, Nigel C Bennett4, Sam Ferreira5, Danny Govender5, Pauli Viljoen5, Angela Bruns6, O Louis van Schalkwyk7,8, Mads F Bertelsen9, Carlos M Duarte10, Martin C van Rooyen4, Craig J Tambling11, Aoife Göppert3, Delmar Diesel3, D Michael Scantlebury3.
Abstract
The combined use of global positioning system (GPS) technology and motion sensors within the discipline of movement ecology has increased over recent years. This is particularly the case for instrumented wildlife, with many studies now opting to record parameters at high (infra-second) sampling frequencies. However, the detail with which GPS loggers can elucidate fine-scale movement depends on the precision and accuracy of fixes, with accuracy being affected by signal reception. We hypothesized that animal behaviour was the main factor affecting fix inaccuracy, with inherent GPS positional noise (jitter) being most apparent during GPS fixes for non-moving locations, thereby producing disproportionate error during rest periods. A movement-verified filtering (MVF) protocol was constructed to compare GPS-derived speed data with dynamic body acceleration, to provide a computationally quick method for identifying genuine travelling movement. This method was tested on 11 free-ranging lions (Panthera leo) fitted with collar-mounted GPS units and tri-axial motion sensors recording at 1 and 40 Hz, respectively. The findings support the hypothesis and show that distance moved estimates were, on average, overestimated by greater than 80% prior to GPS screening. We present the conceptual and mathematical protocols for screening fix inaccuracy within high-resolution GPS datasets and demonstrate the importance that MVF has for avoiding inaccurate and biased estimates of movement.Entities:
Keywords: acceleration; animal behaviour; data filtering; global positioning system; highresolution; terrestrial movement
Mesh:
Year: 2022 PMID: 35042386 PMCID: PMC8767188 DOI: 10.1098/rsif.2021.0692
Source DB: PubMed Journal: J R Soc Interface ISSN: 1742-5662 Impact factor: 4.293
Contingency table documenting the mean accuracy and misclassification rate of the MVF method from∼25 h of behavioural observations (ethograms) between eight individuals. FN, false negative; FP, false positive; TN, true negative; TP, true positive.
| test data (actual) | accuracy (TP + TN/TP + TN + FP + FN) | |||
|---|---|---|---|---|
| positive (moving) | negative (non-moving) | |||
| predicted (MVF method) | positive (MVF = 1 = moving) | true positive rate (TPR) | false positive rate (FPR) | 97.43% |
| negative (MVF = 0 = non-moving) | false negative rate (FNR) | true negative rate (TNR) | ||
| test data (actual) | time spent moving/ non-moving | 19.37% | 80.63% | |
| VeDBA (±1 s.d.) | 0.198 ± 0.058 | 0.039 ± 0.012 | ||
Figure 1Schematic of the derivation of MVF. GPS fixes with an MVF value of 1 are considered to be more accurate given that the data indicate travelling. Note that values used at each stage (including the stepping range and post-smoothing windows in the prior derivations of GPS speed and VeDBA) are user defined and must be adapted for the study species.
Figure 2Example of the movement-based thresholds. (a) A period of predominantly continuous movement (coloured rug at the top of plot denotes MVF values (1 = moving (red), 0 = non-moving (blue)). The peaks of both VeDBA and GPS velocity are due to bouts of running, interspaced by either non-moving or walking bouts. (b) Relationship between VeDBA and GPS speed during a rest period, whereby the individual carried out a transitionary roll while lying prone (at approx. the 2 min mark; as depicted by the pitch and roll angles), after which GPS jitter became more apparent (as demonstrated by the higher variance in GPS speed estimates). (c) GPS speed∼VeDBA relationship for a given lion with linear regression (y = a + bx and zoomed in the inset). Data from (c) are taken only from marked moving periods following the MVF method. Each data point represents the mean value per period, taken from ca two weeks of data acquisition.
Figure 3DD- and GPS-derived data showing intermittent periods of moving and stationary behaviours (lower panel = two-dimensional waveforms versus time of: VeDBA, GPS speed (raw = red, green = smoothed) and pitch and roll collar angles; upper panel = GPS fixes coloured according to MVF values (MVF = 0 = blue; ‘non-moving' | MVF = 1 = red; ‘moving')). Note how many of the periods determined as non-moving (MVF = 0) had high estimates of GPS speed owing to large locational errors and this often followed sharp peaks in VeDBA, coinciding with a postural change (non-travelling behaviour). Note also how closely GPS speed estimates follow the VeDBA trace during periods of predominantly moving (MVF = 1) and the consistency of pitch and roll values (with intermittent bouts of stationary behaviour associated with a change in collar angle). The magnified insert in the upper panel exemplifies the high vertical and horizontal straight-line distance between track coordinates due to GPS jitter.
Figure 4Indices of collar postural offsets per lion, assessed via density estimates of absolute values of (a) pitch and (b) roll. Plots are facetted row-wise according to five scenarios as described to the left of each plot row. The distributions become smoother and unimodal at higher levels of activity.
Figure 5Mean summed distance moved (m) per hour per individual (see electronic supplementary material, S4 for a full description of methods). Each individual's hourly mean is connected across time via a straight line (coloured according to gender; red = female, blue = male). Plots are fitted with a line of best fit according to gender, using a ‘gam smoothing' (grey shading around the line represents the 95% confidence level interval). This procedure was applied independently for non-moving (a) and moving (b) individuals. Note the disparity in distance estimates, with non-moving bouts demonstrating high values during sunlight hours (approx. between 7.00 and 19.00 (grey bars)).
Figure 6Schematic diagram illustrating the factors related to animal behaviour that can change the quality of GPS fixes.