Sarah-Jane Richards1, Matthew I Gibson1,2. 1. Department of Chemistry, University of Warwick, Coventry CV4 7AL, U.K. 2. Warwick Medical School, University of Warwick, Coventry CV4 7AL, U.K.
Abstract
Multivalent glycosylated materials (polymers, surfaces, and particles) often show high affinity toward carbohydrate binding proteins (e.g., lectins) due to the nonlinear enhancement from the cluster glycoside effect. This affinity gain has potential in applications from diagnostics, biosensors, and targeted delivery to anti-infectives and in an understanding of basic glycobiology. This perspective highlights the question of selectivity, which is less often addressed due to the reductionist nature of glycomaterials and the promiscuity of many lectins. The use of macromolecular features, including architecture, heterogeneous ligand display, and the installation of non-natural glycans, to address this challenge is discussed, and examples of selectivity gains are given.
Multivalent glycosylated materials (polymers, surfaces, and particles) often show high affinity toward carbohydrate binding proteins (e.g., lectins) due to the nonlinear enhancement from the cluster glycoside effect. This affinity gain has potential in applications from diagnostics, biosensors, and targeted delivery to anti-infectives and in an understanding of basic glycobiology. This perspective highlights the question of selectivity, which is less often addressed due to the reductionist nature of glycomaterials and the promiscuity of many lectins. The use of macromolecular features, including architecture, heterogeneous ligand display, and the installation of non-natural glycans, to address this challenge is discussed, and examples of selectivity gains are given.
Carbohydrates are diverse (macro)molecules
that coat cell surfaces and lipids (and even RNA[1]) and are present on >50% of human proteins, fulfilling
functions including recognition, signal transduction, and fertilization
and as sites for pathogen invasion.[2,3] The huge structural
diversity of glycans arises from the assembly of monosaccharides via
different glycoside linkages, at different ring positions and with
specific stereochemistry, resulting in the inherent complexity of
the glycome.[4] Proteins that interact or
“read”[5] carbohydrates include
enzymes, anticarbohydrate antibodies, adhesins, and lectins.[6] Hence, the development of probes, binders and
inhibitors of carbohydrate-binding proteins has broad biotechnological
and biomedical value. For material scientists, the motivation to incorporate
glycans is to mimic their multivalent presentation found on cell surfaces.
The actual binding affinity of a carbohydrate to its target lectin
is typically weak (Kd = 10–3–10–6 M) in comparison to antibody–antigen
interactions, which can be <10–9 M. The presentation
of multiple copies of the target carbohydrate on the cell surface
gives rise to an increase in affinity greater than that of the linear
sum of the individual sugars; this is known as the “cluster
glycoside effect”.[7−9] In short, polymers and particles
bearing glycans can show affinity higher than that of a single “small
molecule” of equal concentration, a concept that has been established
now for around 40 years. In 1983, Lee et al.[7] synthesized a series of oligosaccharides, based on N-acetyllactosamine-type glycans, and demonstrated their ability to
inhibit the mammalian hepatic lectin binding to rabbit hepatocytes.
This revealed inhibitory potency in the order tetraantennary >
trianntenary
≫ biantennary ≫ monoantenneary, increasing from 1 mM
to 1 nM, while only increasing the glycan concentration 3-fold. In
1996 Whitesides and co-workers showed that sialic acid–functional
polyacrylamides could prevent influenza from agglutinating (i.e.,
stopping binding) erythrocytes, demonstrating the anti-infective potential
of polymeric glycan mimetics.[10] Kiessling
showed nonlinear increases in affinity of well-defined ring opening
metathesis polymerization (ROMP) derived mannosylated polymers toward
Con A as a function of chain length.[11] Of
course, there are examples of medicinal chemistry approaches for small-molecule
affinity, selectivity, and PK/PD profiles such as those developed
for FimH inhibition.[12,13] However, these are beyond the
scope of this Perspective, which will focus on multivalent systems.These (selected) early examples show the clear benefit of multivalent
assemblies, which provide advantages over monovalent assemblies.[14] Multivalency enables spanning of multiple binding
sites (on the same or different lectins), chelation, subsite binding,
clustering, and statistical rebinding among others, and the mechanisms
of these have been reviewed extensively.[3,15,16] A vast range of multivalent architectures are known,
which will not be reviewed in this Perspective but include dendrimers,[17−25] peptides,[26,27] polymers,[28−33] particles,[34−37] viruses,[38] and presentations designed
to specifically interact with the binding sites.[39,40] Multivalent inhibitors for antiadhesion have also been covered previously,[16,24,41−48] and this Perspective does not aim to re-review these.This
Perspective aims to highlight potential macromolecular solutions
to engineer selectivity into glycomaterials. Multivalent presentation
almost always leads to an increase in affinity, but there is an exciting
opportunity to develop macromolecular tools to increase selectivity. Figure summarizes this
challenge, and the approaches which are covered in this perspective
will include glycan heterogeneity, control of 3D presentation, and
the use of unnatural glycans. We also cover some emerging discovery
approaches for the identification of selective binders.
Figure 1
Scope of the
Perspective on moving from high affinity to high affinity
and high selectivity glycomaterials. The lower panel schematic shows
strategies that are discussed here.
Scope of the
Perspective on moving from high affinity to high affinity
and high selectivity glycomaterials. The lower panel schematic shows
strategies that are discussed here.
Diversity
of Interactions and Promiscuity
In any applications spanning
delivery, sensing, or inhibition,
ensuring selectivity is essential: not against all lectins (or e.g.
antibodies), but against those likely to be in competition in the
same environment. For example, respiratory viruses, including SARS-CoV-2,
have affinities toward sialic acids,[49] as
does influenza,[50] and hence any glycan-based
sensor would require a strategy for selectivity. The selective targeting
of DC-SIGN over other C-type lectins present on dendritic cells presents
a challenge in glycomaterial design for therapy or immune modulation.[51] Blocking DC-SIGN can reduce HIV viral infection,
but another lectin, Langerin, is implicated in clearing viral particles.[52] Both DC-SIGN and Langerin bind mannosylated
glycans (with subtle differences in their profile[53]), and hence achieving selectivity between these two C-type
lectins would be essential if a glycomaterial were to be used. Furthermore,
mannosylated polymers can also activate the complement pathway, which
may limit their translation.[54] To highlight
the diversity of glycan interactions, Figure shows data from the Consortium for Functional
Glycomics (CFG) glycan array[55] versus DC-SIGN.
Any one lectin can bind multiple different glycans, in this case including
not just high mannose but also fucoyslated glycans. The branching
pattern of the glycans also affects the observed extent of binding.
Figure 2
Extract
of glycan-array data for DC-SIGN from the Consortium for
Functional Glycomics (primscreen_5273, Human DC-SIGN-AF488 200 μg
mL–1). Increased fluorescence shows more protein
binding to the immobilized glycans, highlighting how the same lectin
can bind structurally diverse glycans. Selected high-binding glycans
are indicated.
Extract
of glycan-array data for DC-SIGN from the Consortium for
Functional Glycomics (primscreen_5273, Human DC-SIGN-AF488 200 μg
mL–1). Increased fluorescence shows more protein
binding to the immobilized glycans, highlighting how the same lectin
can bind structurally diverse glycans. Selected high-binding glycans
are indicated.The galectin family of lectins
plays a crucial role in human physiology,
but all have affinity toward β-galactosides[56] with subtle differences in their glycan binding profiles,[57] which is also controlled by the architecture
(chimeric, tandem repeat, or prototype).[58] Therefore, if the aim is to selectively identify a galectin as a
biomarker, for example, the cross-reactivity question is crucial.
Finally, cross reactivity is context dependent—cross reactivity
from blood biopsies will be distinct from a wastewater containing
the galactose-binding cholera toxin.[59] Unlike
small molecules, materials chemistry solutions offer a huge opportunity
to control the 3D presentation, density, heterogeneity, and nature
of the glycans, and this Perspective introduces some approaches being
taken to address this problem, hoping to show that this is an area
that is ripe for innovation.
Glycan Density
Perhaps the simplest
tool to tune the glycan/lectin interface is
tuning the side chain density of glycans, which can be achieved by
copolymerization or postpolymerization modification.[60] While outside of the scope of this Perspective, the glycan
array literature already makes extensive use of variable density surface
display, where the differences in density can promote/inhibit inter-/intralectin
binding interactions and have been reviewed.[61] It is also crucial to note that density changes achieved by addition
of another glycan (which introduces potential secondary binders) is
covered later in this Perspective, as the effects from these similar
concepts can be very distinct.Godula et al. employed a microarray
platform with immobilized synthetic
glycopolymers to investigate how glycan valency and spatial separation
affect the binding mode of a panel of four GalNAc specific lectins
(Figure A).[62] SBA (soybean agglutinin) showed the highest
binding to the most dense arrays, whereas HPA (Helix
pomatia agglutinin) showed the highest binding to
the lowest density, even though they are both GalNAc binding lectins,
with the key difference being the lectins’ ability to form
interchain cross-links. Hence, simple density tuning, with careful
consideration of the lectin architecture, introduces selectivity.
This raises the question of how binding affinities/selectivities for
isolated glycans scales with multivalent systems and that they are
not always linear relationships.[63]
Figure 3
Effect of glycan
density on lectin binding. (A) Glycopolymer surfaces
show differential responses to SBA and HPL as a function of GalNAc
side density.[62] (B) Monolayers containing
two distinct glycans show differential responses to BPL binding.[64]
Effect of glycan
density on lectin binding. (A) Glycopolymer surfaces
show differential responses to SBA and HPL as a function of GalNAc
side density.[62] (B) Monolayers containing
two distinct glycans show differential responses to BPL binding.[64]Whitesides and co-workers
prepared self-assembled monolayers bearing
galactose ligands (Figure B) and evaluated binding toward BPL (Bauhinia
purpurea lectin).[64] An
unnatural glycan (with an N-valeryl group and α
replacing a β linkage) showed increased avidity with higher
density but the opposite effect for the natural glycan, showing that
selectivity was possible. It should be noted that characterization
of glycopolymer and other multivalent glycostructures is challenging,
as spacing/clustering of glycans on these scaffolds is mostly unknown
and will almost certainly influence both the affinity and selectivity.
Kwon et al. synthesized 6′-sialyllactose presenting PAMAM-based
dendrimers with well-defined ligand densities and spacing. The G4
dendrimer outperformed larger/smaller dendrimers in an influenza inhibitory
assay, with an estimated spacing of 3 nm between ligands estimated
to be optimum.[65] Smaller di- and trivalent
ligands were also shown to be potent hemagglutinin inhibitors, enhancing
>400-fold in comparison to monovalent ligands.[66] The ligand density has been reported to be crucial for
cholera toxin binding, with many studies reporting that low density
(fewer galactose units) leads to maximum inhibition.[67−69] On consideration of the inherent simplicity in changing density,
this is a valuable tool for identifying selectivity (or preferentiality),
whereby the lectin architecture, in addition to binding-site preference,
can be exploited.
3D Presentation
The reductionist
nature of the glycan presentation in many materials
does not (yet) recapitulate the precise 3D presentation and valency
control which is found in oligosaccharides. Figure A shows selected data from a glycan microarray
against human influenza hemagglutinins.[70] Biantennary glycans led to significant binding, in comparison to
monoantennary glycans, and all binding (or rather binding signal,
in the particular assay) was removed when just a trisaccharide (with
the same final three monosaccharide units) was displayed. Asymmetric
linkages also prevented binding. While the interactions are complex,
involving multiple contacts, this example shows how glycan selectivity
in Nature is driven by the presentation as much as the chemical nature.
Modeling has shown how the chemical nature of how glycans are presented
on arrays can lead to false negatives.[71] A glycan array strategy was again used to discover bivalent ligands
capable of spanning binding sites in LecA (from Pseudomonas
aeruginosa), with only ligands with a precise match
leading to enhanced affinity and selectivity in comparison to a Shiga
toxin.[72] A synthetic biology solution to
controlling the presentation was shown by Branson et al., who precisely
displayed just five copies of the GM1-oligosaccharide onto cholera
toxin proximal to its binding sites (Figure B), ensuring that the glycans were spatially
located for optimal engagement with cholera toxin, leading to nM affinity,[73] which has also been modeled showing that the
size of the multivalent core must match the receptor unit display
and valency.[74]
Figure 4
3D presentation of glycans
affects binding. (A) Neu5Ac terminated
glycans versus hemagglutinins, showing branching and sequence-length
dependent binding.[70] (B) A pentameric glycosylated
cholera toxin B subunit (CTxB) has a 3D match to CTxB for nM inhibition.[73]
3D presentation of glycans
affects binding. (A) Neu5Ac terminated
glycans versus hemagglutinins, showing branching and sequence-length
dependent binding.[70] (B) A pentameric glycosylated
cholera toxin B subunit (CTxB) has a 3D match to CTxB for nM inhibition.[73]To tune the presentation
of glycans, Kiessling and co-workers exploited
ROMP to install cis or trans backbones,
on otherwise identical polymers. The cis backbones
led to an extended conformation, leading to stronger binding in comparison
to trans backbones, mimicking native mucin presentation.[69] Changing the side chain linker from an amide
to an ester in glycopolymers, which in turn affects the flexibility
of the glycan, was reported to dramatically alter the overall affinity
of mannosylated glycopolymers.[75] A proline
macrocycle was used to control the presentation of mannose to discriminate
between Langerin and DC-SIGN, increasing selectivity many thousand-fold.
Both lectins bind to the mannose, but selectivity was achieved due
to the spacing differences in the Langerin homotrimer, in comparison
to the DC-SIGN homotetramer (Figure A).[76] Bachem et al. used
DNA-PNA scaffolds to precisely space and cluster glycans to selectively
engage Langerin with 1150-fold increased affinity in comparison to
the free ligand.[77] In addition to precisely
targeting 3D presentation to gain affinity, the presentation of glycans
can affect a sensing outcome (which is not necessarily proportional
to affinity). For example, SARS-CoV-2 spike protein binding in a flow-through
assay was dependent on the length of polymeric linkers, connecting
Neu5NAc to gold nanoparticles,[49] and polymer
chain length and chemistry tuned the outputs in gold nanoparticle
aggregation assays (Figure B).[34] The polymer architecture
also gives rise to very different binding, with a linear sialic acid
presenting polymer showing higher in vitro and in vivo activity for protection against influenza infection,
attributed to the increased steric shielding by the linear polymer,
in comparison to the compact dendrimer.[78] Star branched polymannosides varying in only the number and length
of arms showed differential responses to immobilized human lectins
using SPR.[79] These examples highlight how
both precision and, more generally, macromolecular engineering could
be easily exploited in the search for selectivity.
Figure 5
Glycan presentation affects
overall binding. (A) Cyclic proline
scaffolds bearing Man4, with selective DC-SIGN binding, over Langerin,
even though both bind the glycan individually.[76] (B) Flow-through detection of SARS-CoV-2 spike protein
using polymer-tethered glyconanoparticles, with the signal controlled
by diameter and chain length, with the same glycan. Image adapted
from ref (49).
Glycan presentation affects
overall binding. (A) Cyclic proline
scaffolds bearing Man4, with selective DC-SIGN binding, over Langerin,
even though both bind the glycan individually.[76] (B) Flow-through detection of SARS-CoV-2 spike protein
using polymer-tethered glyconanoparticles, with the signal controlled
by diameter and chain length, with the same glycan. Image adapted
from ref (49).
Glycan Heterogeneity and Targeting of Secondary
Binding Sites
A classic description of lectins is also as
“pattern
recognition molecules”.[80] Pathogens and the host share many glycans, and hence differentiating
between these must be driven by a selection other than just their
chemical identity. The primary binding site of a lectin is the subject
of most focus, but allosteric (secondary) interactions can also be
exploited, by incorporating multiple (smaller) glycans proximal to
each other rather than as a single oligosaccharide, mimicking glycan
branching. Hence, presenting multiple glycans can lead to selectivity
gains (and is related to the previous section in that the 3D control
of these can also matter).Turnbull et al. probed the GM1 CTx
interaction by ITC, showing
that the sialic acid unit contributed 44% of the intrinsic binding
energy, although the sialic acid ligand when used alone had no appreciable
affinity (Figure A,B).[81] This demonstrated that an approach to target
secondary binding pockets, in addition to the primary β-galactose
site, is a valid tool for gaining selectivity. Tran et al. used polymeric
scaffolds bearing β-galactose as the primary ligand for CTx
but also “clicked” (azide/alkyne) additional functional
groups proximal to the galactose, to mimic the branched GM1 ganglioside.[82] This approach led to a shift in IC50 from 584 μM (for sialic acid) to 0.014 μM for a fluorobenzyl
derivative (Figure C). Gibson and co-workers showed that addition of aromatic secondary
units (in addition to galactose) in a two-step postpolymerization
strategy enabled the relative affinity (selectivity) of the glycopolymers
toward CTx and PNA (peanut agglutinin) to be tuned by 20-fold.[83,84] In contrast, using thiolactone chemistry (Figure D), a benzyl side chain reduced CTx inhibition
but retained RCA120 inhibition, showing that the precise
location and density of side chains has a significant effect.[84] The density of side chains in CTx inhibition
has also been reported in several studies, with lower galactose density
often leading to increased inhibitory activity, showing that the “more
is better” design principle is overly simplistic.[27,68,69,85]
Figure 6
Targeting
secondary binding sites in CTx. (A) Schematic of the
GM1 glycan in the CTx binding site. (B) Affinity of glycans toward
CTx from ITC.[81] (C) Secondary binding site
targeting via a click reaction proximal to the primary galactose unit
and CTx inhibition.[82] (D) Thiolactone ring
opening to install secondary binding units and CTx/RCA120 inhibition.[84]
Targeting
secondary binding sites in CTx. (A) Schematic of the
GM1 glycan in the CTx binding site. (B) Affinity of glycans toward
CTx from ITC.[81] (C) Secondary binding site
targeting via a click reaction proximal to the primary galactose unit
and CTx inhibition.[82] (D) Thiolactone ring
opening to install secondary binding units and CTx/RCA120 inhibition.[84]The importance of heterogeneity in biomimetics is in line with
the complexity of the glycans in the glycocalyx,[86] and the strongest binder may not be the only component
essential for biological function. Worstell et al. used a nanocube-based
sensing system to demonstrate that the addition of fucosyl GM1 into
a mixture with GM2 led to enhanced binding affinity toward CTx, even
though the fucosyl GM1 itself had minimal affinity.[87] Similarly, galactose and fucose copolymers were more effective
inhibitors of CTx binding to human enteroids than galacto- or fuco-polymers
alone, due to the additional lower-affinity fucose-binding site.[88,89] What is clear is that most materials strategies currently rely on
trial and error to judge benefits (or not) from heterogeneity. The
challenge of the polymer sequence for example, where extended sequences
of one glycan may emerge, rather than a pure statistical distribution
in a copolymer, makes quantification of the exact role of each component
a major challenge.The above examples support mechanisms where
the heterogeneity increases
affinity/selectivity by targeting secondary sites, but that is not
the sole mode of action. An alternative mechanism of action for heterogeneity
gains (and hence potentially selectivity) is due to steric shielding,
from a nonbinding partner. Hartmann and co-workers have shown that
nonbinding galactose units on a sequence-defined oligomer enhance
inhibitory activity but do not change the overall affinity (Kd) due to a steric shielding effect, as shown
by STD NMR (Figure A).[90] Garcia-Fernandez and co-workers
undertook an extremely detailed study using cyclodextrins as the scaffold
for the heterogeneous display of glycan (Figure B).[91] Selectivity
between Con A and PNA was achieved not only by heterogeneity but also
in their inhibitory action against glycosidases, tuning in selectivity
toward maltase, isomalatase, and α-mannosidase. The data supported
that sliding or steric shielding was again the mechanism for enhancement,
rather than a secondary binding site (unlike the previous examples
for CTx). Dendrimers bearing variable densities of mannose and galactose
were immobilized on surfaces, and screening revealed “hot spots”
where a specific presentation/ratio led to selectivity. The underpinning
mechanism for this was not clear but showed the principle that heterogeneity
could be deployed in a biosensor format.[92] Otten et al. used mixtures of GalNAc and ManNAc in a gold nanoparticle
biosensor format (for lectin aggregation). Nonlinear responses to
glycan mixtures were seen, such that affinity for SBA could be retained
but was significantly reduced toward RCA120 due to the
addition of mannose.[36]
Figure 7
Heterogeneous presentation
of high- and low-affinity glycans can
enhance binding. (A) Sequence-defined polymers binding Con A in solution
and at the interface (competition experiment).[90] Reprinted with permission from ref (90). Copyright 2014 American
Chemical Society. (B) Proposed modes of affinity enhancement for heterogeneous
glycoclusters based on cyclodextrin scaffolds.[91] Reprinted with permission from ref (91). Copyright 2017 John Wiley
and Sons.
Heterogeneous presentation
of high- and low-affinity glycans can
enhance binding. (A) Sequence-defined polymers binding Con A in solution
and at the interface (competition experiment).[90] Reprinted with permission from ref (90). Copyright 2014 American
Chemical Society. (B) Proposed modes of affinity enhancement for heterogeneous
glycoclusters based on cyclodextrin scaffolds.[91] Reprinted with permission from ref (91). Copyright 2017 John Wiley
and Sons.Variable-density glycopolymers
have been immobilized onto glass
slides.[93] Using this strategy, individual
glycan components from degraded heparin sulfate were screened for
their ability to bind FGF2 (fibroblast growth factor 2).[94] However, it is important to note that heterogeneity
does not always lead to these increased gains and is material- and
lectin-dependent. For example, dilution of an α-mannosylated
glycopolymer with β-galactose side chains led to a decrease
in DC-SIGN binding (measured by SPR; Figure A).[33] Alternatively,
the heterogeneity may play only a slight role, as seen for mannosylated
gold nanoparticles for inhibiting FimH-driven adhesion (Figure B).[95]
Figure 8
Glycan
heterogeneity can reduce affinity. (A) Mannosylated glycopolymers
show reduced inhibitory activity vs DC-SIGN on dilution with galactose.[33] (B) Mannosylated glycoparticles with reduced
affinity toward Con A and ORN178 (E. coli) as galactose is introduced.[95]
Glycan
heterogeneity can reduce affinity. (A) Mannosylated glycopolymers
show reduced inhibitory activity vs DC-SIGN on dilution with galactose.[33] (B) Mannosylated glycoparticles with reduced
affinity toward Con A and ORN178 (E. coli) as galactose is introduced.[95]This subsection highlighted the inherent complexity
(and huge potential)
of heterogeneous and secondary-site targeting materials. A key observation
is not all lectins respond to the dual effect of glycan dilution,
showing that selectivity tuning is possible. The mechanism for selectivity
is often subtle, covering steric shielding effects, targeting secondary
sites, or allowing/preventing inter-/intralectin binding site spanning.
However, subtle differences between systems can have large effects
and high-throughput screening-based approaches, based on sequentially
modified scaffolds, could play a role in dissecting these interactions.
Non-natural
Glycans and Glycan Mimetics
To drive selectivity and affinity,
a medicinal chemistry (e.g.
not materials) approach would be to use non-natural glycans that have
favorable binding and pharmacokinetic properties. Thiosugars (where
the internal ring oxygen is substituted by a sulfur, rather than those
with an anomeric thiol), iminosugars (NH replacement), and carbasugars
(CH2) are established medicinal chemistry tools, especially
as glycosidase inhibitors,[96] and glycomimetic
drugs have reached the clinic.[97] The application
of these approaches in multivalent systems is less common, as the
synthetic burden may outweigh the intrinsic simplicity of many polymeric
systems, but has already shown significant promise. Kiessling and
co-workers developed a mannose mimetic that was displayed on BSA carrier
proteins and functioned as a DC-SIGN agonist.[98] The same group demonstrated that C-linked mannose glycopolymers
were more potent binders of Con A than O-linked species[30] and that selective positioning of sulfate groups
on galactosylated polymers can tune the affinity between L- and P-selectins.[99]Fieschi and co-workers have explored the
use of glycomimietics
to tune selectivity. They observed that C-6 sulfation in GlcNAc derivatives
led to selectivity toward Langerin. They developed this further to
identify inhibitors (Figure A) which only bound DC-SIGN and not Langerin[100] and were incorporated into dendritic structures, which
selectively inhibited HIV infection in a model study.[101]
Figure 9
Glycomimetic strategy to identify selective DC-SIGN binders,
with
no inhibition of Langerin, and subsequent multivalent display.[100,101]
Glycomimetic strategy to identify selective DC-SIGN binders,
with
no inhibition of Langerin, and subsequent multivalent display.[100,101]Fluorine is an appealing modification
to glycans as a tool to modulate
their pharmacokinetics, due to its small size and minimal effect on
glycan conformation.[102,103] Fluorine is not a hydrogen bond
donor but is a weak acceptor, and hence the replacement of hydroxyls
with fluorines can lead to significant changes in binding.[104] Fluorinated phenyltriazolyl-thiogalactosides
engaged with additional interactions with Galectin-3, in comparison
to nonfluorinated species.[105] Fluorination
of the glycan portion of MUC-1 peptides resulted in differential antiserum
responses.[106] Site-specific fluorination
at the terminal mannose C-6 in Man3GlcNAc was found to be crucial
to Con A binding, but the branched mannose C-6 could tolerate fluorination,
when it was displayed on a glycoprotein.[107] Encouraged by this, Richards et al. employed a chemoenzymatic synthesis
to obtain a library of fluorinated Lacto-N-biose
derivatives, exploiting the promiscuity of the BiGalK and BiGalHexNAcP
enzymes from Bifidobacterium infantis which tolerate fluorinated donors (Figure A). Incorporation of these onto multivalent
gold nanoparticle platforms allowed the identification of specific
fluorination sites to tune discrimination between Galectin-3 and Galectin-7
with the glycomaterials (Figure B,C).[108]
Figure 10
Fluorinated Lacto-N-biose-functional gold nanoparticles
to bind galectins.[108] (A) Schematic of
glyconanoparticle structure (B) Aggregation kinetics of selected glyconanoparticles
with Galectin-3. (C) Glycans identified (in multivalent format only)
with switched affinity. Reproduced from ref (108) with permission from
the Royal Society of Chemistry.
Fluorinated Lacto-N-biose-functional gold nanoparticles
to bind galectins.[108] (A) Schematic of
glyconanoparticle structure (B) Aggregation kinetics of selected glyconanoparticles
with Galectin-3. (C) Glycans identified (in multivalent format only)
with switched affinity. Reproduced from ref (108) with permission from
the Royal Society of Chemistry.
Directed
Evolution, High-Throughput, and Biochemical Panning
Approaches
High-throughput discovery approaches offer an
alternative (or complementary)
tool for the discovery of high-affinity and selective ligands. For
example, robotics and parallel synthesis have been used for polymeric[109,110] and inorganic[111] materials. Due to selection
and amplification tools, protein and nucleic acid based materials
can be screened by phage[112] or apatamer/SELEX[113] technologies. However, for glycans, which are
not template-directed and cannot be amplified, the discovery tools
are fewer. Automated glycan synthesis is rapidly progressing but is
still not a routine laboratory tool.[114,115] It should
be noted that glycan arrays are high-throughput, once the glycans
are in hand,[70] but have already been reviewed
and are not covered here.[116]Krauss
and co-workers made libraries of peptides containing non-natural
amino acids (bearing an alkyne) connected to mRNA. This mRNA-encoded
library could be glycosylated (using glycosyl azides), followed by
selection and PCR amplification of the “winning” binders.
Using this approach, a library of 1013 glycopeptides were
screened and a picomolar binder to the HIV neutralizing antibody 2G12
was identified,[117] with a chemical glycosylation
step being essential during selection rounds. Ng et al. used a related
strategy whereby phase display was employed, followed by oxidation
of terminal serine residues to aldehydes to capture amino-oxy mannose
(Figure A).[118] Selection against Con A (positive) and BSA
(negative) (Figure B) led to ligands with increased selectivity via modulation of the
peptide linkage, with an example hit being shown in Figure C. Interestingly, the same
ligand for Con A binding showed high affinity to DC-SIGN which also
binds high-mannose, highlighting again the selectivity challenge.
A method where the peptide is not varied but the glycan immobilized
onto an M13 bacteriophage is, termed a “liquid glycan array”,
has also been reported.[119] Related approaches
to identify selective binders using DNA-encoded glycans as microarray
alternatives can be used to pan hundreds of glycans.[120] These methods all show huge potential for true high-throughput
screening and are especially suitable for positive/negative selection
to introduce selectivity.
Figure 11
Phage-based screening for glycosylated peptides
to enhance mannose
binding to Con A.[118] (A) Schematic of glycosylation
at the serine N-terminus of peptides on phage. (B) Selection and enrichment
processes. (C) Example of a discovered peptide sequence with enhanced
Con A affinity in comparison to methyl-mannoside. Reprinted (adapted)
with permission from ref (118). Copyright 2015 American Chemical Society.
Phage-based screening for glycosylated peptides
to enhance mannose
binding to Con A.[118] (A) Schematic of glycosylation
at the serine N-terminus of peptides on phage. (B) Selection and enrichment
processes. (C) Example of a discovered peptide sequence with enhanced
Con A affinity in comparison to methyl-mannoside. Reprinted (adapted)
with permission from ref (118). Copyright 2015 American Chemical Society.
Outlook and Opportunities
The aim of this perspective is
to highlight that macromolecular
and materials science has a huge potential to have an effect on glycoscience
and that not only is the selectivity challenge tractable but also
there exists a diverse range of strategies to achieve it. This perspective
is not intended to be comprehensive but to introduce the reader to
some current strategies that show promise in this challenging area.By drawing from detailed “small molecule” studies,
significant gains in selectivity are possible by exploiting the benefits
of multivalency, including the ability to present multiple different
glycans on the same scaffold, use steric shielding effects, and tune
the linker chemistry. However, moving from simple monosaccharides
to oligo or non-natural glycans is essential to ensure that this large
step is taken. Advances in high-throughput materials discovery is
well placed to support this, as well as exciting macromolecular tools
based upon, for example, sequence-controlled[121] and folded polymers,[122] which show early
promise.[90] Recent advances in structural
biology, including cryo-electron microscopy[123] and the new computation tools to predict protein structure,[124] will inevitably feed into this as well. It
is also crucial, if glycomaterials are to be used in biological environments,
to understand how the media affect the performance. The protein corona,
where proteins absorb to nanoparticle surfaces,[125] has been shown to introduce additional glycoproteins[126] and hence there is the potential for a highly
selective binder in “pure” solutions to lose function
in an application. We anticipate that the next generation of glycomaterials
will move beyond using simple monosaccharides against plant lectins
(which have obvious value still) to real targets under biomedically
relevant conditions.
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