Literature DB >> 17627883

SELEX--a (r)evolutionary method to generate high-affinity nucleic acid ligands.

Regina Stoltenburg1, Christine Reinemann, Beate Strehlitz.   

Abstract

SELEX stands for systematic evolution of ligands by exponential enrichment. This method, described primarily in 1990 [Ellington, A.D., Szostak, J.W., 1990. In vitro selection of RNA molecules that bind specific ligands. Nature 346, 818-822; Tuerk, C., Gold, L., 1990. Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase. Science 249, 505-510] aims at the development of aptamers, which are oligonucleotides (RNA or ssDNA) binding to their target with high selectivity and sensitivity because of their three-dimensional shape. Aptamers are all new ligands with a high affinity for considerably differing molecules ranging from large targets as proteins over peptides, complex molecules to drugs and organic small molecules or even metal ions. Aptamers are widely used, including medical and pharmaceutical basic research, drug development, diagnosis, and therapy. Analytical and separation tools bearing aptamers as molecular recognition and binding elements are another big field of application. Moreover, aptamers are used for the investigation of binding phenomena in proteomics. The SELEX method was modified over the years in different ways to become more efficient and less time consuming, to reach higher affinities of the aptamers selected and for automation of the process. This review is focused on the development of aptamers by use of SELEX and gives an overview about technologies, advantages, limitations, and applications of aptamers.

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Year:  2007        PMID: 17627883     DOI: 10.1016/j.bioeng.2007.06.001

Source DB:  PubMed          Journal:  Biomol Eng        ISSN: 1389-0344


  305 in total

1.  Primer-free aptamer selection using a random DNA library.

Authors:  Weihua Pan; Ping Xin; Susan Patrick; Stacey Dean; Christine Keating; Gary Clawson
Journal:  J Vis Exp       Date:  2010-07-26       Impact factor: 1.355

2.  Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing.

Authors:  Minseon Cho; Yi Xiao; Jeff Nie; Ron Stewart; Andrew T Csordas; Seung Soo Oh; James A Thomson; H Tom Soh
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-12       Impact factor: 11.205

Review 3.  Post-transcriptional global regulation by CsrA in bacteria.

Authors:  Johan Timmermans; Laurence Van Melderen
Journal:  Cell Mol Life Sci       Date:  2010-05-06       Impact factor: 9.261

4.  Utility of aptamer-fluorescence in situ hybridization for rapid detection of Pseudomonas aeruginosa.

Authors:  K-Y Wang; Y-L Zeng; X-Y Yang; W-B Li; X-P Lan
Journal:  Eur J Clin Microbiol Infect Dis       Date:  2010-10-10       Impact factor: 3.267

Review 5.  Synthetic RNA switches as a tool for temporal and spatial control over gene expression.

Authors:  Andrew L Chang; Joshua J Wolf; Christina D Smolke
Journal:  Curr Opin Biotechnol       Date:  2012-02-03       Impact factor: 9.740

Review 6.  Recent developments in protein and cell-targeted aptamer selection and applications.

Authors:  Jun Liu; Mingxu You; Ying Pu; Huixia Liu; Mao Ye; Weihong Tan
Journal:  Curr Med Chem       Date:  2011       Impact factor: 4.530

7.  Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery.

Authors:  Jan Hoinka; Alexey Berezhnoy; Phuong Dao; Zuben E Sauna; Eli Gilboa; Teresa M Przytycka
Journal:  Nucleic Acids Res       Date:  2015-04-13       Impact factor: 16.971

Review 8.  Drug carrier interaction with blood: a critical aspect for high-efficient vascular-targeted drug delivery systems.

Authors:  Daniel J Sobczynski; Margaret B Fish; Catherine A Fromen; Mariana Carasco-Teja; Rhima M Coleman; Omolola Eniola-Adefeso
Journal:  Ther Deliv       Date:  2015-08-14

9.  Circular Bivalent Aptamers Enable in Vivo Stability and Recognition.

Authors:  Hailan Kuai; Zilong Zhao; Liuting Mo; Hui Liu; Xiaoxiao Hu; Ting Fu; Xiaobing Zhang; Weihong Tan
Journal:  J Am Chem Soc       Date:  2017-06-29       Impact factor: 15.419

10.  Rational design of a synthetic mammalian riboswitch as a ligand-responsive -1 ribosomal frame-shifting stimulator.

Authors:  Ya-Hui Lin; Kung-Yao Chang
Journal:  Nucleic Acids Res       Date:  2016-08-12       Impact factor: 16.971

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