| Literature DB >> 34943603 |
Jasjit S Suri1,2, Sushant Agarwal2,3, Alessandro Carriero4, Alessio Paschè5, Pietro S C Danna5, Marta Columbu5, Luca Saba5, Klaudija Viskovic6, Armin Mehmedović6, Samriddhi Agarwal2,3, Lakshya Gupta2, Gavino Faa7, Inder M Singh1, Monika Turk8, Paramjit S Chadha1, Amer M Johri9, Narendra N Khanna10, Sophie Mavrogeni11, John R Laird12, Gyan Pareek13, Martin Miner14, David W Sobel13, Antonella Balestrieri5, Petros P Sfikakis15, George Tsoulfas16, Athanasios Protogerou17, Durga Prasanna Misra18, Vikas Agarwal18, George D Kitas19,20, Jagjit S Teji21, Mustafa Al-Maini22, Surinder K Dhanjil23, Andrew Nicolaides24, Aditya Sharma25, Vijay Rathore23, Mostafa Fatemi26, Azra Alizad27, Pudukode R Krishnan28, Ferenc Nagy29, Zoltan Ruzsa30, Archna Gupta31, Subbaram Naidu32, Kosmas I Paraskevas33, Mannudeep K Kalra34.
Abstract
(1) Background: COVID-19 computed tomography (CT) lung segmentation is critical for COVID lung severity diagnosis. Earlier proposed approaches during 2020-2021 were semiautomated or automated but not accurate, user-friendly, and industry-standard benchmarked. The proposed study compared the COVID Lung Image Analysis System, COVLIAS 1.0 (GBTI, Inc., and AtheroPointTM, Roseville, CA, USA, referred to as COVLIAS), against MedSeg, a web-based Artificial Intelligence (AI) segmentation tool, where COVLIAS uses hybrid deep learning (HDL) models for CT lung segmentation. (2) Materials andEntities:
Keywords: AI; COVID-19; COVLIAS; CT; DL; HDL; MedSeg; benchmark.4; lung segmentation; validation
Year: 2021 PMID: 34943603 PMCID: PMC8699928 DOI: 10.3390/diagnostics11122367
Source DB: PubMed Journal: Diagnostics (Basel) ISSN: 2075-4418
Figure 1Pipeline for comparing AI-based COVLIAS and MedSeg. The benchmarking stage shows the comparison between COVLIAS and MedSeg. The CT machine uses the ITALIAN cohort during experimentation, and during validation, the CT machine uses the CROATIA cohort.
Figure 2Raw CT images from NOVARA, ITALIAN dataset [3].
Figure 3Raw CT images from the CROATIA dataset.
Figure 4VGG-SegNet (HDL 1) architecture.
Figure 5ResNet-SegNet (HDL 2) architecture.
Figure 6Opening page of the MedSeg tool.
Figure 7Display of CT image using the MedSeg tool.
Figure 8Segmentation of the lung in CT slice using the MedSeg tool.
Figure 9COVLIAS (HDL 1) (green) in column 1; COVLIAS (HDL 2) (green) in column 2; MedSeg (green) in column 3, MD 1 in row 1 (red); MD 2 in row 2 (red).
Figure 10COVLIAS (HDL 1) (green) in column 1; COVLIAS (HDL 2) (green) in column 2; MedSeg (green) in column 3, MD 1 in row 1 (red); MD 2 in row 2 (red).
Figure 11Bland–Altman plots: COVLIAS (row 1 and row 2) vs. MedSeg (row 3) using MD 1. Column 1: left lung, column 2: right lung, and column 3: mean of left and right. COVLIAS (HDL 1): VGG-SegNet; COVLIAS (HDL 2): ResNet-SegNet.
Figure 12Bland–Altman plots: COVLIAS (row 1 and row 2) vs. MedSeg (row 3) using MD 2. Column 1: left lung, column 2: right lung, and column 3: mean of left and right. COVLIAS (HDL 1): VGG-SegNet; COVLIAS (HDL 2): ResNet-SegNet.
Figure 13CC plots: COVLIAS (row 1 and row 2) vs. MedSeg (row 3) using MD 1. Column 1: left lung, column 2: right lung, and column 3: mean of left and right lungs. COVLIAS (HDL 1): VGG-SegNet; COVLIAS (HDL 2): ResNet-SegNet.
Figure 14CC plots: COVLIAS (row 1 and row 2) vs. MedSeg (row 3) using MD 2. Column 1: left lung, column 2: right lung, and column 3: mean of left and right lungs. COVLIAS (HDL 1): VGG-SegNet; COVLIAS (HDL 2): ResNet-SegNet.
Figure 15ROC plot: COVLIAS vs. MedSeg. Row 1: left lung, row 2: right lung, row 3: combined lung. Left: using MD 1, Right: using MD 2.
Figure 16Cumulative frequency plots: COVLIAS (row 1 and row 2) vs. MedSeg (row 3) using MD 1. Column 1: left lung, column 2: right lung, and column 3: mean of left and right lungs. COVLIAS (HDL 1): VGG-SegNet; COVLIAS (HDL 2): ResNet-SegNet.
Figure 17Cumulative frequency plots: COVLIAS (row 1 and row 2) vs. MedSeg (row 3) using MD 2. Column 1: left lung, column 2: right lung, and column 3: mean of left and right lungs. COVLIAS (HDL 1): VGG-SegNet; COVLIAS (HDL 2): ResNet-SegNet.
FoM table for COVLIAS and MedSeg for lung area error against MD.
| MD 1 | MD 2 | % Difference | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Left | Right | Mean | Left | Right | Mean | Left | Right | Mean | |
| MedSeg | 96.42 | 96.85 | 96.61 | 96.36 | 96.55 | 96.45 | 0.1% | 0.3% | 0.2% |
| VGG-SegNet | 92.45 | 93.41 | 92.89 | 92.40 | 93.13 | 92.73 | 0.1% | 0.3% | 0.2% |
| ResNet-SegNet | 99.96 | 98.63 | 99.39 | 99.98 | 98.30 | 99.23 | 0.0% | 0.3% | 0.2% |
Mann–Whitney, Paired t-test, and Wilcoxon test for COVLIAS and MedSeg for combined lung area against MD.
| Mann-Whitney | Paired | Wilcoxon | |
|---|---|---|---|
| COVLIAS (HDL 1) vs. MD 1 | |||
| COVLIAS (HDL 1) vs. MD 2 | |||
| COVLIAS (HDL 2) vs. MD 1 | |||
| COVLIAS (HDL 2) vs. MD 2 | |||
| MedSeg vs. MD 1 | |||
| MedSeg vs. MD 2 |
Figure 18Bland–Altman plot: COVLIAS 1.0 vs. MedSeg. Left. Column 1: left lung, column 2: right lung, and column 3: combined lungs. COVLIAS (HDL 1): VGG-SegNet; COVLIAS (HDL 2): ResNet-SegNet.
Figure 19CC plot: COVLIAS 1.0 vs. MedSeg. Column 1: left lung, column 2: right lung, and column 3: combined lungs. COVLIAS (HDL 1): VGG-SegNet; COVLIAS (HDL 2): ResNet-SegNet.
Figure 20COVLIAS vs. MedSeg: Segmented mask (blue) on the raw CT CROATIA lung image.
Figure 21COVLIAS vs. MedSeg: Segmented mask (blue) on the Control CT lung image (large lung).
Figure 22COVLIAS vs. MedSeg: Segmented mask (blue) on the Control CT lung image (small lung).
Figure 23COVLIAS vs. MedSeg: Segmented mask (blue) on the non-COVID CT lung image (large lung).
Figure 24COVLIAS vs. MedSeg: Segmented mask (blue) on the non-COVID CT lung image (small lung).
Benchmarking table.
| Author (Year) | # of Patients | Gender | # of Images | # of Tracers | Variability Studies | Image Size | Comparison | Model | Solo vs. HDL | Modality | Area Error |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cai et al. (2020) [ | 99 | 58 males; | 6336 | 2 | ✗ | - | - | UNet | Solo | 2D | ✗ |
| Paluru et al. (2021) [ | 69 | - | 4339 | NA | ✓ | 512 | 7 | Anam-net | Solo | 2D | ✗ |
| Saood et al. (2021) [ | - | 100 | NA | ✗ | 256 | 2 | UNet, SegNet | Solo | 2D | ✗ | |
| Suri et al. (2021) [ | 72 | 46 males; | 5000 | 1 | ✗ | 768 | 4 | NIH, | Both | 2D | ✓ |
| Suri et al. (2021) [ | 72 | 46 males; | 5000 | 2 | ✓ | 768 | 13 | PSP Net, | Both | 2D | ✓ |
| Suri et al. (2021) | 79 | 51 males. | 5500 | 1 | ✓ | 768 | 4 | VGG-SegNet, | HDL | 2D | ✓ |
#: number; HDL: Hybrid Deep Learning.