Literature DB >> 3956445

The superstructure of chromatin and its condensation mechanism. I. Synchrotron radiation X-ray scattering results.

J Bordas, L Perez-Grau, M H Koch, M C Vega, C Nave.   

Abstract

Synchroton radiation X-ray scattering experiments have been performed on chicken erythrocyte chromatin fibres over a wide range of ionic conditions and on various states of the fibres (i.e. "native" in solution, in gels and in whole nuclei; chromatin depleted of the H1 (H5) histones and chromatin with bound ethidium bromide). A correlation between the results obtained with the various chromatin preparations provides evidence for a model according to which at low ionic strength the chromatin fibre already possesses a helical superstructure, with a diameter comparable to that of condensed chromatin, held together by the H1(H5) histone. The most significant structural modification undergone upon an increase of the ionic strength is a reduction of the helix pitch, this leads to condensation in a manner similar to the folding of an accordion. The details of this process depend on whether monovalent or divalent cations are used to raise the ionic strength, the latter producing a much higher degree of condensation. Measurements of the relative increase of the mass per unit length indicate that the most condensed state is a helical structure with a pitch around 3.0-4.0 nm. In this paper we give a detailed presentation of the experimental evidence obtained from static and time-resolved scattering experiments, which led to this model.

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Year:  1986        PMID: 3956445     DOI: 10.1007/bf00542560

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  36 in total

1.  Preparation of native chromatin and damage caused by shearing.

Authors:  M Noll; J O Thomas; R D Kornberg
Journal:  Science       Date:  1975-03-28       Impact factor: 47.728

2.  The degree of unwinding of the DNA helix by ethidium. I. Titration of twisted PM2 DNA molecules in alkaline cesium chloride density gradients.

Authors:  J C Wang
Journal:  J Mol Biol       Date:  1974-11-15       Impact factor: 5.469

3.  Cleavage of structural proteins during the assembly of the head of bacteriophage T4.

Authors:  U K Laemmli
Journal:  Nature       Date:  1970-08-15       Impact factor: 49.962

4.  Small angle neutron scattering studies of chromatin subunits in solution.

Authors:  R P Hjelm; G G Kneale; P Sauau; J P Baldwin; E M Bradbury; K Ibel
Journal:  Cell       Date:  1977-01       Impact factor: 41.582

5.  Interaction and conformational changes of chromatin with divalent ions.

Authors:  N Borochov; J Ausio; H Eisenberg
Journal:  Nucleic Acids Res       Date:  1984-04-11       Impact factor: 16.971

6.  Can phosphorylation of histone H1 be responsible for chromatin condensation in mitosis?

Authors:  A Jerzmanowski; K Staron
Journal:  J Theor Biol       Date:  1981-03-07       Impact factor: 2.691

7.  Stages of tubulin assembly and disassembly studied by time-resolved synchrotron X-ray scattering.

Authors:  J Bordas; E M Mandelkow; E Mandelkow
Journal:  J Mol Biol       Date:  1983-02-15       Impact factor: 5.469

8.  Interaction of chromatin with NaCl and MgCl2. Solubility and binding studies, transition to and characterization of the higher-order structure.

Authors:  J Ausio; N Borochov; D Seger; H Eisenberg
Journal:  J Mol Biol       Date:  1984-08-15       Impact factor: 5.469

9.  Unravelled nucleosomes, nucleosome beads and higher order structures of chromatin: influence of non-histone components and histone H1.

Authors:  F Thoma; T Koller
Journal:  J Mol Biol       Date:  1981-07-15       Impact factor: 5.469

10.  The higher order structure of chicken erythrocyte chromosomes in vivo.

Authors:  J P Langmore; C Schutt
Journal:  Nature       Date:  1980-12-11       Impact factor: 49.962

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  24 in total

1.  DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure.

Authors:  D Z Staynov
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

2.  Computer simulation of the 30-nanometer chromatin fiber.

Authors:  Gero Wedemann; Jörg Langowski
Journal:  Biophys J       Date:  2002-06       Impact factor: 4.033

3.  Direct detection of linker DNA bending in defined-length oligomers of chromatin.

Authors:  J Yao; P T Lowary; J Widom
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

4.  The superstructure of chromatin and its condensation mechanism. VI. Electric dichroism and model calculations.

Authors:  M H Koch; Z Sayers; A M Michon; P Sicre; R Marquet; C Houssier
Journal:  Eur Biophys J       Date:  1989       Impact factor: 1.733

5.  Topological constraints on the possible structures of the 30 nm chromatin fibre.

Authors:  D Z Staynov; Y G Proykova
Journal:  Chromosoma       Date:  2007-10-13       Impact factor: 4.316

6.  Hydrodynamic studies on defined heterochromatin fragments support a 30-nm fiber having six nucleosomes per turn.

Authors:  Rodolfo Ghirlando; Gary Felsenfeld
Journal:  J Mol Biol       Date:  2008-01-03       Impact factor: 5.469

7.  Orienting rigid and flexible biological assemblies in ferrofluids for small-angle neutron scattering studies.

Authors:  T Sosnick; S Charles; G Stubbs; P Yau; E M Bradbury; P Timmins; J Trewhella
Journal:  Biophys J       Date:  1991-11       Impact factor: 4.033

Review 8.  What determines the folding of the chromatin fiber?

Authors:  K van Holde; J Zlatanova
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-01       Impact factor: 11.205

9.  X-ray small angle scattering study of chromatin as a function of fiber length.

Authors:  E Maccioni; L Vergani; A Dembo; G Mascetti; C Nicolini
Journal:  Mol Biol Rep       Date:  1998-03       Impact factor: 2.316

Review 10.  Structural studies of proteins by high-flux X-ray and neutron solution scattering.

Authors:  S J Perkins
Journal:  Biochem J       Date:  1988-09-01       Impact factor: 3.857

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