| Literature DB >> 34767682 |
Sean D McGarry1, Michael Brehler2, John D Bukowy3, Allison K Lowman2, Samuel A Bobholz1, Savannah R Duenweg1, Anjishnu Banerjee4, Sarah L Hurrell2, Dariya Malyarenko5, Thomas L Chenevert5, Yue Cao5,6, Yuan Li6, Daekeun You6, Andrey Fedorov7, Laura C Bell8, C Chad Quarles8, Melissa A Prah1, Kathleen M Schmainda1, Bachir Taouli9, Eve LoCastro10, Yousef Mazaheri10,11, Amita Shukla-Dave10,11, Thomas E Yankeelov12, David A Hormuth12, Ananth J Madhuranthakam13, Keith Hulsey13, Kurt Li14, Wei Huang16, Wei Huang16, Mark Muzi17, Michael A Jacobs18, Meiyappan Solaiyappan18, Stefanie Hectors19, Tatjana Antic20, Gladell P Paner20, Watchareepohn Palangmonthip21,22, Kenneth Jacobsohn23, Mark Hohenwalter2, Petar Duvnjak2, Michael Griffin2, William See23, Marja T Nevalainen21, Kenneth A Iczkowski21, Peter S LaViolette2,24.
Abstract
BACKGROUND: Diffusion-weighted imaging (DWI) is commonly used to detect prostate cancer, and a major clinical challenge is differentiating aggressive from indolent disease.Entities:
Keywords: MRI; cancer; diffusion; multisite |modelling; prostate
Mesh:
Year: 2021 PMID: 34767682 PMCID: PMC9095769 DOI: 10.1002/jmri.27983
Source DB: PubMed Journal: J Magn Reson Imaging ISSN: 1053-1807 Impact factor: 5.119
FIGURE 1Schematic representation of the experimental design. Top: Raw diffusion data distributed to partner institutions in DICOM format, partner institutions return fits to MCW where they were manually aligned to the T2‐weighted image. Bottom: Post‐surgery, tissue was sliced to match the T2‐weighted image using patient‐specific slicing jigs. Whole‐mount samples were stained and annotated by a pathologist. Annotations were then aligned to the T2‐weighted image. , , , Right: Pathologist annotations and fits from multiple institutions were combined for analysis to determine variability in prostate cancer sensitivity and specificity.
Patient Demographics and Clinical Data (N = 33, Age 59.7 ± 5.7)
| Patient No. | Age (Years) | PSA (ng/mL) | Gleason Score | Gleason Grade | T Stage | EPE | Number of PIRADS Lesions | PIRADS Score | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
| G3 | G4‐FG | G4‐Cr | G5 | ||||||||
| 1 | 61 | 13.1 | 3 + 4 (=7) | 1 | 1 | 0 | 0 | T3a | 1 | 1 | PR4 |
| 2 | 68 | 4.5 | 3 + 4 (=7) | 1 | 1 | 0 | 0 | T2c | 0 | 2 | PR5, PR5 |
| 3 | 59 | 6.6 | 3 + 4 (=7) | 1 | 0 | 0 | 0 | T2c | 0 | 2 | PR3, PR4 |
| 4 | 56 | 4.4 | 5 + 4 (=9) | 1 | 1 | 1 | 1 | T3a | 1 | 1 | PR5 |
| 5 | 64 | 6.3 | 4 + 3 (=7) | 1 | 1 | 1 | 0 | T3a | 1 | 1 | PR5 |
| 6 | 55 | 4.9 | 3 + 4 (=7) | 1 | 1 | 0 | 0 | T3b | 0 | 1 | PR4 |
| 7 | 58 | 21.9 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T2c | 0 | 1 | PR5 |
| 8 | 60 | 3.0 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T2c | 0 | 2 | PR4, PR2 |
| 9 | 71 | 6.6 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T2c | 0 | 2 | PR5, PR3 |
| 10 | 59 | 5.5 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T3a | 1 | 1 | PR5 |
| 11 | 57 | 5.0 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T3a | 1 | 3 | PR4, PR4, PR2 |
| 12 | 49 | 4.9 | 3 + 3 (=6) | 1 | 0 | 0 | 0 | T2c | 0 | 2 | PR4, PR4 |
| 13 | 58 | 6.5 | 3 + 3 (=6) | 1 | 0 | 0 | 0 | T2c | 0 | 3 | PR4, PR4, PR4 |
| 14 | 60 | 4.5 | 3 + 3 (=6) | 1 | 0 | 1 | 0 | T2a | 0 | 1 | PR3 |
| 15 | 66 | 11.0 | 3 + 4 (=7) | 1 | 1 | 1 | 1 | T3a | 1 | 1 | PR4 |
| 16 | 52 | 4.9 | 3 + 4 (=7) | 1 | 1 | 0 | 0 | T2c | 0 | 1 | PR4 |
| 17 | 63 | 5.2 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T3a | 1 | 2 | PR4, PR4 |
| 18 | 62 | 6.9 | 3 + 4 (=7) | 1 | 1 | 1 | 1 | T2c | 0 | 0 | 0 |
| 19 | 56 | 6.4 | 3 + 3 (=6) | 1 | 0 | 0 | 0 | T2a | 0 | 1 | PR2 |
| 20 | 55 | 3.4 | 3 + 3 (=6) | 1 | 0 | 0 | 0 | T2c | 0 | 1 | PR3 |
| 21 | 61 | 10.3 | 4 + 5 (=9) | 1 | 1 | 1 | 0 | T3b | 0 | 1 | PR4 |
| 22 | 45 | 7.2 | 3 + 3 (=6) | 1 | 0 | 0 | 0 | T2a | 0 | 1 | PR4 |
| 23 | 53 | 18.5 | 3 + 4 (=7) | 1 | 1 | 0 | 0 | T2c | 0 | 1 | PR3 |
| 24 | 59 | 7.3 | 4 + 3 (=7) | 1 | 1 | 1 | 1 | T2c | 0 | 1 | PR5 |
| 25 | 61 | 5.0 | 3 + 4 (=7) | 1 | 0 | 0 | 0 | T2a | 0 | 3 | PR4, PR4, PR2 |
| 26 | 54 | 17.2 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T2c | 0 | 3 | PR4, PR5, PR4 |
| 27 | 68 | 18.7 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T3b | 0 | 2 | PR5, PR4 |
| 28 | 63 | 4.9 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T2c | 0 | 3 | PR4, PR4, PR4 |
| 29 | 59 | 4.0 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T2c | 0 | 1 | PR4 |
| 30 | 59 | 2.8 | 3 + 3 (=6) | 1 | 1 | 0 | 0 | T2c | 0 | 2 | PR5, PR4 |
| 31 | 66 | 5.9 | 3 + 4 (=7) | 1 | 1 | 1 | 1 | T3a | 1 | 1 | PR4 |
| 32 | 66 | 5.2 | 3 + 4 (=7) | 1 | 1 | 1 | 0 | T2c | 0 | 0 | 0 |
| 33 | 67 | 8.2 | 4 + 5 (=9) | 1 | 1 | 0 | 0 | T2c | 0 | 1 | PR4 |
EPE = extraprostatic extension from pathology report; PSA = prostate specific antigen.
Site Implementation Methods and Submitted Image Format
| Site‐Specific Processing | Central Analysis Processing | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MEADC | IVIM | K | MEADC | IVIM | K | Constraints | Submission Image Format | Code/Tool | Link | Citation | Reorient | Scaling | |
| SI1 | X | X | X | <2000 | ≤200 | 0, 100, 200, 500, 1000, 2000 | NIFTI | In House Matlab | 8, 9, 23 | X | X | ||
| SI2 | X | X | X | All | All | All | NRRD | DWModeling SlicerProstate extension | DWIModeling ( | 26 | X | ||
| SI3 | X | X | All | All | DICOM | IB Diffusion, Osirix Plug‐in | 8 | X | X | ||||
| SI4 | X | X | All | <2000 | DICOM | In House Matlab | 23 | X | |||||
| SI5 | X | X | X | All | ≥200 | All | X | NIFTI | In House Matlab/QUAMPER | 8, 9, 23 | X | X | |
| SI6 | X | All | NIFTI | In House Matlab | 9, 21 | X | X | ||||||
| SI7 | X | X | X | ≥200 | All | ≥200 | X | MHD | In House Matlab | 21, 23, 27 | X | X | |
| SI8 | X | X | All | All | X | NIFTI | In House Matlab | 9, 23 | X | X | |||
| SI9 | X | X | X | All | ≥200 (BID), ≤50 (F BID*) | ≥200 | X | DICOM | In House Matlab | 8, 9, 23 | X | ||
| SI10 | X | X | All | ≥200 | X | NIFTI | ADCmap Osirix Plugin | ADCmap ( | 8 | X | X | ||
| SI11 | X | X | All | All | DICOM | In House imFIAT | 10 | X | X | ||||
| SI12 | X | X | All | All | DICOM | ImageJ and Custom C++ Code | 8 | X | X | ||||
| SI13 | X | X | X | All | All | All | NIFTI | Osirix UMM Diffusion Plugin | 8, 10, 32 | X | |||
| SI14 | X | All | X | NIFTI | ADCmap Osirix Plugin | ADCmap ( | 8 | X | X | ||||
MEADC = mono‐exponential apparent diffusion coefficient; IVIM = intra‐voxel incoherent motion; K = kurtosis.
FIGURE 2A summary of submitted site diffusion‐weighted imaging (DWI) fit parameter maps aligned to a pathologist‐annotated whole‐mount histology slide. Left: The corresponding T2‐weighted slice, pathologist annotations in histology space containing a dominant G4 fused gland (G4FG) tumor (yellow) with a secondary G3 region (green) and two small G4 cribriform gland (G4CG) tumors (Pink). Left bottom shows the pathologist annotations aligned in MRI space and overlaid on the T2. Right: Site implementations included mono‐exponential apparent diffusion coefficient (MEADC), bi‐exponential diffusion (BID), pseudo‐diffusion (BID* [×10−3 mm2/second]), and perfusion fraction (BID [×10−3 mm2/second], BID* [×10−3 mm2/second], and F), and kurtosis and kurtosis diffusion (K and DK). Some sites submitted multiple sets of fits, each implementation is separated and treated separately. Relative contrast differences between sites are notable in the MEADC images, but independent of implementation the tumor has decreased diffusion compared to surrounding tissue. Bi‐exponential fits showed notable contrast differences between site implementation while kurtosis fits were notably similar.
FIGURE 3Percent difference matrix comparing DWI parameters between site implementation (SI) and between classes of cancer and normal (Top). Pearson correlation coefficient matrices comparing DWI parameters between SI and classes of cancer and non‐cancer (Bottom). MEADC, K, and DK show the least percent difference across sites and the highest correlation. Data are shown in Tables S2 and S3 in the Supplemental Material. DWI = diffusion‐weighted imaging; MEADC = mono‐exponential apparent diffusion coefficient; K = kurtosis; DK = diffusion kurtosis.
FIGURE 4Boxplot showing area under the curve receiver operating characteristic (ROC AUC) variability by site implemented fits. Left: Cancer (G3+) vs. benign atrophy. Right: Gleason 3 vs. Gleason 4+. ROC AUC was calculated lesion‐wise using the median value in each pathologist annotated region larger than 200 voxels. A tighter boxplot indicates less cancer differentiation variability between site implementations.
Statistical Results Comparing Site Implementation ROC AUC Values Between Contrasts and Conditions Cancer vs. Benign Atrophy (CAvBA), and Low‐Grade vs. High‐Grade Cancer (LGvHG)
| CAvBA | BID | BIDS | BIPF | DK | K | MEADC |
|---|---|---|---|---|---|---|
| BID | 0.988 | 0.982 | 0.054 | 0.040* | 0.011* | |
| BIDS | 1.000 | 0.203 | 0.162 | 0.060 | ||
| BIPF | 0.204 | 0.162 | 0.058 | |||
| DK | 1.000 | 0.998 | ||||
| K | 1.000 | |||||
| MEADC |
ROC AUC = receiver operating characteristic area under the curve; BID = bi‐exponential diffusion; DK = diffusion kurtosis; K = kurtosis; MEADC = mono‐exponential apparent diffusion coefficient.
*P < 0.05.
Statistical Results Comparing the Contrast‐Specific Variances Between ROC AUC Across Conditions CvBA and LGvHG
| CvBA | BID | BIDS | BIPF | DK | K | MEADC |
|---|---|---|---|---|---|---|
| BID | 0.177 | 0.538 | 0.029 | 0.505 | 0.032* | |
| BIDS | 0.955 | <0.001* | <0.001* | <0.001* | ||
| BIPF | <0.001* | <0.001* | <0.001* | |||
| DK | <0.001* | 0.998 | ||||
| K | <0.001* | |||||
| MEADC |
ROC AUC = receiver operating characteristic area under the curve; BID = bi‐exponential diffusion; DK = diffusion kurtosis; K = kurtosis; MEADC = mono‐exponential apparent diffusion coefficient.
FIGURE 5Receiver operator characteristic area under the curve (ROC AUC) for all institutions grouped by fit and repeated varying the minimum lesion size included in the analysis. Lesion size limit was varied from 100 voxels to 500 voxels stratifying G3+ vs. benign atrophy (Left) and stratifying G3 from high‐grade tumors (Right). There is a trend towards increasing AUC as the cluster limit for inclusion becomes more selective in both cancer vs. benign and low‐grade vs. high‐grade. Fits that are highly variable between sites remain highly variable independent of cluster limit.
FIGURE 6Area under the curve receiver operator characteristic (ROC AUC) for cancer vs. regions left unlabeled by all pathologists (unlabeled consensus) annotations varying the pathologist annotating the slides. Left: Sample annotations from all five observers on a representative whole‐mount prostate slide. Right: Boxplots showing AUCs varying the image contrast and observer annotating the slides. Median values were extracted from regions of interest (ROIs) greater than 200 voxels in plane.