Literature DB >> 34766158

Applications of digital PCR in COVID-19 pandemic.

Chianru Tan1, Dongdong Fan1, Nan Wang1, Fang Wang1, Bo Wang2, Lingxiang Zhu3, Yong Guo1.   

Abstract

The coronavirus disease 2019 (COVID-19) pandemic has led to a public health crisis and global panic. This infectious disease is caused by a novel coronavirus named severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Digital polymerase chain reaction (dPCR), which is an emerging nucleic acid amplification technology that allows absolute quantification of nucleic acids, plays an important role in the detection of SARS-CoV-2. In this review, we introduce the principle and advantages of dPCR, and review the applications of dPCR in the COVID-19 pandemic, including detection of low copy number viruses, measurement of the viral load, preparation of reference materials, monitoring of virus concentration in the environment, detection of viral mutations, and evaluation of anti-SARS-CoV-2 drugs. We also discuss the challenges of dPCR in clinical practice.
© 2021 The Authors. VIEW published by Shanghai Fuji Technology Consulting Co., Ltd, authorized by Professional Community of Experimental Medicine, National Association of Health Industry and Enterprise Management (PCEM) and John Wiley & Sons Australia, Ltd.

Entities:  

Keywords:  COVID‐19; SARS‐CoV‐2; digital PCR; nucleic acid testing

Year:  2021        PMID: 34766158      PMCID: PMC7883284          DOI: 10.1002/VIW.20200082

Source DB:  PubMed          Journal:  View (Beijing)        ISSN: 2688-268X


  29 in total

1.  Tolerance of droplet-digital PCR vs real-time quantitative PCR to inhibitory substances.

Authors:  Tanis C Dingle; Ruth Hall Sedlak; Linda Cook; Keith R Jerome
Journal:  Clin Chem       Date:  2013-09-03       Impact factor: 8.327

2.  A multiplexed droplet digital PCR assay performs better than qPCR on inhibition prone samples.

Authors:  Ruth Hall Sedlak; Jane Kuypers; Keith R Jerome
Journal:  Diagn Microbiol Infect Dis       Date:  2014-09-16       Impact factor: 2.803

3.  High-throughput droplet digital PCR system for absolute quantitation of DNA copy number.

Authors:  Benjamin J Hindson; Kevin D Ness; Donald A Masquelier; Phillip Belgrader; Nicholas J Heredia; Anthony J Makarewicz; Isaac J Bright; Michael Y Lucero; Amy L Hiddessen; Tina C Legler; Tyler K Kitano; Michael R Hodel; Jonathan F Petersen; Paul W Wyatt; Erin R Steenblock; Pallavi H Shah; Luc J Bousse; Camille B Troup; Jeffrey C Mellen; Dean K Wittmann; Nicholas G Erndt; Thomas H Cauley; Ryan T Koehler; Austin P So; Simant Dube; Klint A Rose; Luz Montesclaros; Shenglong Wang; David P Stumbo; Shawn P Hodges; Steven Romine; Fred P Milanovich; Helen E White; John F Regan; George A Karlin-Neumann; Christopher M Hindson; Serge Saxonov; Bill W Colston
Journal:  Anal Chem       Date:  2011-10-28       Impact factor: 6.986

4.  Absolute quantification by droplet digital PCR versus analog real-time PCR.

Authors:  Christopher M Hindson; John R Chevillet; Hilary A Briggs; Emily N Gallichotte; Ingrid K Ruf; Benjamin J Hindson; Robert L Vessella; Muneesh Tewari
Journal:  Nat Methods       Date:  2013-09-01       Impact factor: 28.547

5.  Sensitivity assessment of droplet digital PCR for SARS-CoV-2 detection.

Authors:  Luca Falzone; Nicolò Musso; Giuseppe Gattuso; Dafne Bongiorno; Concetta Ilenia Palermo; Guido Scalia; Massimo Libra; Stefania Stefani
Journal:  Int J Mol Med       Date:  2020-07-13       Impact factor: 4.101

6.  Clinical Characteristics of Imported Cases of Coronavirus Disease 2019 (COVID-19) in Jiangsu Province: A Multicenter Descriptive Study.

Authors:  Jian Wu; Jun Liu; Xinguo Zhao; Chengyuan Liu; Wei Wang; Dawei Wang; Wei Xu; Chunyu Zhang; Jiong Yu; Bin Jiang; Hongcui Cao; Lanjuan Li
Journal:  Clin Infect Dis       Date:  2020-07-28       Impact factor: 9.079

7.  Highly accurate and sensitive diagnostic detection of SARS-CoV-2 by digital PCR.

Authors:  Lianhua Dong; Junbo Zhou; Chunyan Niu; Quanyi Wang; Yang Pan; Sitong Sheng; Xia Wang; Yongzhuo Zhang; Jiayi Yang; Manqing Liu; Yang Zhao; Xiaoying Zhang; Tao Zhu; Tao Peng; Jie Xie; Yunhua Gao; Di Wang; Xinhua Dai; Xiang Fang
Journal:  Talanta       Date:  2020-10-27       Impact factor: 6.057

Review 8.  Diagnosing COVID-19: The Disease and Tools for Detection.

Authors:  Buddhisha Udugama; Pranav Kadhiresan; Hannah N Kozlowski; Ayden Malekjahani; Matthew Osborne; Vanessa Y C Li; Hongmin Chen; Samira Mubareka; Jonathan B Gubbay; Warren C W Chan
Journal:  ACS Nano       Date:  2020-03-30       Impact factor: 15.881

9.  Direct Comparison of SARS-CoV-2 Analytical Limits of Detection across Seven Molecular Assays.

Authors:  Becky Fung; Allan Gopez; Venice Servellita; Shaun Arevalo; Coral Ho; Anne Deucher; Ed Thornborrow; Charles Chiu; Steve Miller
Journal:  J Clin Microbiol       Date:  2020-08-24       Impact factor: 5.948

10.  Arbidol monotherapy is superior to lopinavir/ritonavir in treating COVID-19.

Authors:  Zhen Zhu; Zhaohui Lu; Tianmin Xu; Cong Chen; Gang Yang; Tao Zha; Jianchun Lu; Yuan Xue
Journal:  J Infect       Date:  2020-04-10       Impact factor: 38.637

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  6 in total

Review 1.  Applications of digital PCR in COVID-19 pandemic.

Authors:  Chianru Tan; Dongdong Fan; Nan Wang; Fang Wang; Bo Wang; Lingxiang Zhu; Yong Guo
Journal:  View (Beijing)       Date:  2021-01-01

Review 2.  The evolving direct and indirect platforms for the detection of SARS-CoV-2.

Authors:  Sonia Fathi Karkan; Reza Maleki Baladi; Mehdi Shahgolzari; Monireh Gholizadeh; Fahimeh Shayegh; Arash Arashkia
Journal:  J Virol Methods       Date:  2021-11-27       Impact factor: 2.014

Review 3.  Diagnostic assay and technology advancement for detecting SARS-CoV-2 infections causing the COVID-19 pandemic.

Authors:  Bidhan C Dhar
Journal:  Anal Bioanal Chem       Date:  2022-02-25       Impact factor: 4.478

Review 4.  Diagnostic Tools for Rapid Screening and Detection of SARS-CoV-2 Infection.

Authors:  Satish Kumar Pandey; Girish C Mohanta; Vinod Kumar; Kuldeep Gupta
Journal:  Vaccines (Basel)       Date:  2022-07-28

5.  Image Segmentation and Quantification of Droplet dPCR Based on Thermal Bubble Printing Technology.

Authors:  Mingjie Zhu; Zilong Shan; Wei Ning; Xuanye Wu
Journal:  Sensors (Basel)       Date:  2022-09-23       Impact factor: 3.847

6.  Absolute quantification of SARS-CoV-2 with Clarity Plus™ digital PCR.

Authors:  Shawn Yi Han Tan; Sheng Yi Milton Kwek; Huiyu Low; Yan Ling Joy Pang
Journal:  Methods       Date:  2021-07-15       Impact factor: 4.647

  6 in total

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