| Literature DB >> 34749701 |
Jungwon Yoon1,2,3, Heather Billings4, Chung-Il Wi1,2, Elissa Hall4, Sunghwan Sohn5, Jung Hyun Kwon1,6, Euijung Ryu7, Pragya Shrestha1,2, Hongfang Liu5, Young J Juhn8,9.
Abstract
BACKGROUND: A subgroup of patients with asthma has been reported to have an increased risk for asthma-associated infectious and inflammatory multimorbidities (AIMs). To systematically investigate the association of asthma with AIMs using a large patient cohort, it is desired to leverage a broad range of electronic health record (EHR) data sources to automatically identify AIMs accurately and efficiently.Entities:
Keywords: Asthma; Delphi; Electronic health records; Multimorbidities; Natural language processing
Mesh:
Year: 2021 PMID: 34749701 PMCID: PMC8573872 DOI: 10.1186/s12911-021-01663-y
Source DB: PubMed Journal: BMC Med Inform Decis Mak ISSN: 1472-6947 Impact factor: 2.796
Participants’ demographic information
| Characteristics | Number |
|---|---|
| Male | 8 |
| Female | 5 |
| Professor | 5 |
| Associate Professor | 2 |
| Assistant Professor | 5 |
| Instructor | 1 |
| Rheumatology | 3 |
| Infectious Disease | 3 |
| Gastroenterology | 3 |
| Allergy | 2 |
| Family medicine/epidemiology | 1 |
| Pediatric critical care | 1 |
| 0–4 | 1 |
| 5–10 | 6 |
| > 10 | 6 |
Fig. 1Overall process for identifying 19 AIMs and their operational definitions
Fig. 2Example of Delphi process and iterative submission of operational definitions for AIMs (e.g., Pneumonia). Three internal and two external rounds were completed sequentially
Final operational definition of 19 asthma-associated infectious and inflammatory comorbidities
| Infectious diseases | EHR sources |
|---|---|
1. A: Any pathogenic bacteria isolated from normally sterile body fluid including blood, CSF, pleural fluid, pericardia fluid, peritoneal fluid, or synovial fluid, B. Any physician diagnosis of sepsis, bacteremia, meningitis, encephalitis, mastoiditis, brain abscess, pneumonia, cellulitis, osteomyelitis, septic arthritis, pleuritis, or pericarditis, and pyelonephritis documented in medical records related to bacteria source cultured | Lab result, Clinical note (Diagnosis) |
2. A. Physician diagnosis of sore throat, pharyngitis and tonsillitis B. Throat swab test (rapid antigen detection test (RADT), Streptococcus pyogenes culture, or PCR [Polymerase chain reaction]) C. 3 or more episodes within 12 months | Lab result, Clinical note (Diagnosis) |
3. A. Physician diagnosis of pneumonia B. Compatible exam findings (fever > = 100.5◦F AND cough AND rale or crackle or crepitation) C. Chest radiograph finding suggesting pneumonia (consolidation, lobar pneumonia, and infiltrates) | Clinical note (Diagnosis, History of present illness, Physical examination), Chest X-ray finding |
4. CPT (Current Procedural Terminology) codes for tympanostomy tube placement (surrogate marker for either persistent or recurrent otitis media during childhood) | CPT codes |
5. A. 4 or more episodes of Physician diagnosis of sinusitis documented with antibiotic prescription over 12 months B. Sinus CT findings suggestive of sinus opacification or air/fluid level C. Sinus surgery | Clinical note (Diagnosis), Computerized Tomography (CT) finding, Operational note |
6. Polymerase Chain Reaction (PCR) + for Bordetella pertussis from the upper respiratory tract | Lab result |
7. A. Physician diagnosis of Varicella (chickenpox) B. Positive lab result (PCR +) of varicella infection occurred 42 days after varicella vaccination (excluding non-vaccinated children) | Lab result, Clinical note (Diagnosis) |
8. A. Physician diagnosis of zoster B. Positive lab result (PCR +) C. Anti-viral medication for Varicella zoster virus (e.g. acyclovir) | Lab result, Clinical note, Medication prescription |
9. A. Recovery of any organisms from a suprapubic specimen, at least 50 000 colony-forming units per milliliter (CFUs/mL) from a catheterized specimen, or at least 100 000 CFUs/mL from a clean-catch specimen B. At least 10 white blood cells per microliter from an unspun specimen examined using a counting chamber or at least 5 white blood cells per high power field from a centrifuged specimen | Lab result |
10. A. Physician diagnosis of any skin fungal infection with antifungal therapy B. Fungal culture or fungal smear positive | Lab result, Clinical note (Diagnosis) |
11. B. PCR + or culture + test for respiratory or gastrointestinal virus infection | Lab result, Clinical note (Diagnosis) |
12. A. Physician diagnosis of Celiac disease documented at least once by gastroenterologist B. Positive CD serology markers (TTG lgA > 10 higher than normal) C. EMA positivity or DGA positively D. TTG IgA positivity E. Histologic findings (increased in IEL, villous atrophy, crypts hyperplasia) | Lab result, Clinical note (Diagnosis), Endoscopy finding |
13. Physician diagnosis of Kawasaki disease documented at least once by infectious disease, cardiology, or rheumatology specialist | Clinical note (Diagnosis) |
14. A. Surgeon's diagnosis in operation note (excluding incidental appendectomy or normal appendix) B. Physician diagnosis of appendicitis C. Imaging study suggestive of appendicitis | Clinical note (Diagnosis), Operational note, CT or Ultrasound finding |
15. Physician diagnosis of autoimmune thyroiditis documented at least twice in a 6 month or greater span including endocrinologist's diagnosis at least once | Clinical note (Diagnosis) |
16. Physician diagnosis of Type 1 Diabetes documented at least twice in a 6 month or greater span including endocrinologist's diagnosis at least once | Clinical note (Diagnosis) |
17. Physician diagnosis of Type 2 Diabetes documented at least twice in a 6 month or greater span including endocrinologist's diagnosis at least once | Clinical note (Diagnosis) |
18. Physician diagnosis of IBD, CD, or UC documented at least twice in a 6 month or greater span including gastroenterologist's diagnosis at least once | Clinical note (Diagnosis) |
19. Physician diagnosis of JRA, JIA, and RA documented at least twice in a 6 month or greater span including a rheumatologist's diagnosis at least once | Clinical note (Diagnosis) |
The consensus level attained for each of the 19 operational definitions of asthma associated infectious and inflammatory multimorbidities (AIMs)
| Total mean (SD)% of agreement (n = 13) | Final % of IEP that agreed with the definition (n = 8) | Final % of EEP that agreed with the definition (n = 5) | |
|---|---|---|---|
| Invasive bacterial infection | 91 (9) | 88 | 100 |
| Frequent Streptococcus pyogenes upper respiratory infection | 87 (8) | 88 | 80 |
| Pneumonia | 82 (14) | 100 | 80 |
| Recurrent/persistent otitis media | 87 (19) | 100 | 100 |
| Recurrent/persistent infectious sinusitis | 80 (17) | 88 | 100 |
| Bordetella pertussis | 98 (6) | 100 | 100 |
| Breakthrough varicella infection | 94 (9) | 88 | 100 |
| Zoster (Shingles) | 86 (17) | 100 | 80 |
| Urinary Tract Infection | 89 (7) | 88 | 100 |
| Skin Fungal Infection | 85 (10) | 100 | 80 |
| Viral Infection confirmed by lab | 85 (21) | 100 | 100 |
| Celiac disease | 83 (24) | 100 | 100 |
| Kawasaki disease | 84 (11) | 75 | 80 |
| Appendicitis | 98 (6) | 88 | 100 |
| Autoimmune thyroiditis | 82 (25) | 88 | 80 |
| Diabetes type 1 | 90 (17) | 88 | 100 |
| Diabetes type 2 | 90 (17) | 88 | 100 |
| Inflammatory bowel disease | 77 (18) | 100 | 80 |
| JRA, JA, RA | 84 (16) | 100 | 100 |
JRA, Juvenile Rheumatoid Arthritis; JA, Juvenile idiopathic Arthritis; RA, Rheumatoid Arthritis