Literature DB >> 3474623

DNA sequence analysis with a modified bacteriophage T7 DNA polymerase.

S Tabor, C C Richardson.   

Abstract

A chemically modified phage T7 DNA polymerase has three properties that make it ideal for DNA sequencing by the chain-termination method. The enzyme is highly processive, catalyzing the polymerization of thousands of nucleotides without dissociating. By virtue of the modification the 3' to 5' exonuclease activity is eliminated. The modified polymerase efficiently uses nucleotide analogs that increase the electrophoretic resolution of bands in gels. Consequently, dideoxynucleotide-terminated fragments have highly uniform radioactive intensity throughout the range of a few to thousands of nucleotides in length. There is virtually no background due to terminations at pause sites or secondary-structure impediments. Processive synthesis with dITP in place of dGTP eliminates band compressions, making possible the unambiguous determination of sequences from a single orientation.

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Year:  1987        PMID: 3474623      PMCID: PMC305186          DOI: 10.1073/pnas.84.14.4767

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  19 in total

1.  Bacteriophage T7 DNA replication in vitro. Stimulation of DNA synthesis by T7 RNA polymerase.

Authors:  H Fischer; D C Hinkle
Journal:  J Biol Chem       Date:  1980-08-25       Impact factor: 5.157

2.  Construction of a plasmid that overproduces the large proteolytic fragment (Klenow fragment) of DNA polymerase I of Escherichia coli.

Authors:  C M Joyce; N D Grindley
Journal:  Proc Natl Acad Sci U S A       Date:  1983-04       Impact factor: 11.205

3.  Characterization of strand displacement synthesis catalyzed by bacteriophage T7 DNA polymerase.

Authors:  R L Lechner; M J Engler; C C Richardson
Journal:  J Biol Chem       Date:  1983-09-25       Impact factor: 5.157

4.  Sequence diversity among related genes for recognition of specific targets in DNA molecules.

Authors:  J A Gough; N E Murray
Journal:  J Mol Biol       Date:  1983-05-05       Impact factor: 5.469

5.  Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.

Authors:  M D Biggin; T J Gibson; G F Hong
Journal:  Proc Natl Acad Sci U S A       Date:  1983-07       Impact factor: 11.205

6.  Structure-independent nucleotide sequence analysis.

Authors:  D R Mills; F R Kramer
Journal:  Proc Natl Acad Sci U S A       Date:  1979-05       Impact factor: 11.205

7.  Two forms of the DNA polymerase of bacteriophage T7.

Authors:  M J Engler; R L Lechner; C C Richardson
Journal:  J Biol Chem       Date:  1983-09-25       Impact factor: 5.157

8.  T7-induced DNA polymerase. Characterization of associated exonuclease activities and resolution into biologically active subunits.

Authors:  S Adler; P Modrich
Journal:  J Biol Chem       Date:  1979-11-25       Impact factor: 5.157

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  Deoxynucleoside [1-thio]triphosphates prevent proofreading during in vitro DNA synthesis.

Authors:  T A Kunkel; F Eckstein; A S Mildvan; R M Koplitz; L A Loeb
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

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  841 in total

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Authors:  P A Bradford
Journal:  Antimicrob Agents Chemother       Date:  1999-12       Impact factor: 5.191

2.  Roles of polyadenylation and nucleolytic cleavage in the filamentous phage mRNA processing and decay pathways in Escherichia coli.

Authors:  A F Goodrich; D A Steege
Journal:  RNA       Date:  1999-07       Impact factor: 4.942

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Authors:  D Robichon; M Arnaud; R Gardan; Z Pragai; M O'Reilly; G Rapoport; M Débarbouillé
Journal:  J Bacteriol       Date:  2000-03       Impact factor: 3.490

Review 5.  Demystified ... DNA nucleotide sequencing.

Authors:  J S Randhawa; A J Easton
Journal:  Mol Pathol       Date:  1999-06

6.  Conserved bipartite motifs in yeast eIF5 and eIF2Bepsilon, GTPase-activating and GDP-GTP exchange factors in translation initiation, mediate binding to their common substrate eIF2.

Authors:  K Asano; T Krishnamoorthy; L Phan; G D Pavitt; A G Hinnebusch
Journal:  EMBO J       Date:  1999-03-15       Impact factor: 11.598

7.  Identification of conserved residues contributing to the activities of adenovirus DNA polymerase.

Authors:  H Liu; J H Naismith; R T Hay
Journal:  J Virol       Date:  2000-12       Impact factor: 5.103

8.  Down-regulation of cell surface receptors is modulated by polar residues within the transmembrane domain.

Authors:  L Zaliauskiene; S Kang; C G Brouillette; J Lebowitz; R B Arani; J F Collawn
Journal:  Mol Biol Cell       Date:  2000-08       Impact factor: 4.138

9.  Multiple roles for the C-terminal domain of eIF5 in translation initiation complex assembly and GTPase activation.

Authors:  K Asano; A Shalev; L Phan; K Nielsen; J Clayton; L Valásek; T F Donahue; A G Hinnebusch
Journal:  EMBO J       Date:  2001-05-01       Impact factor: 11.598

10.  A multifactor complex of eukaryotic initiation factors, eIF1, eIF2, eIF3, eIF5, and initiator tRNA(Met) is an important translation initiation intermediate in vivo.

Authors:  K Asano; J Clayton; A Shalev; A G Hinnebusch
Journal:  Genes Dev       Date:  2000-10-01       Impact factor: 11.361

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