Literature DB >> 34608297

Interplay between chromatin marks in development and disease.

Sanne M Janssen1, Matthew C Lorincz2.   

Abstract

DNA methylation (DNAme) and histone post-translational modifications (PTMs) have important roles in transcriptional regulation. Although many reports have characterized the functions of such chromatin marks in isolation, recent genome-wide studies reveal surprisingly complex interactions between them. Here, we focus on the interplay between DNAme and methylation of specific lysine residues on the histone H3 tail. We describe the impact of genetic perturbation of the relevant methyltransferases in the mouse on the landscape of chromatin marks as well as the transcriptome. In addition, we discuss the specific neurodevelopmental growth syndromes and cancers resulting from pathogenic mutations in the human orthologues of these genes. Integrating these observations underscores the fundamental importance of crosstalk between DNA and histone H3 methylation in development and disease.
© 2021. Springer Nature Limited.

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Year:  2021        PMID: 34608297     DOI: 10.1038/s41576-021-00416-x

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  258 in total

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Journal:  Cell       Date:  1985-01       Impact factor: 41.582

Review 3.  Understanding histone H3 lysine 36 methylation and its deregulation in disease.

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Journal:  Cell Mol Life Sci       Date:  2019-05-30       Impact factor: 9.261

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Journal:  Nucleic Acids Res       Date:  1983-02-11       Impact factor: 16.971

Review 5.  The diverse roles of DNA methylation in mammalian development and disease.

Authors:  Maxim V C Greenberg; Deborah Bourc'his
Journal:  Nat Rev Mol Cell Biol       Date:  2019-08-09       Impact factor: 94.444

6.  Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome.

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Journal:  Nat Genet       Date:  2007-03-04       Impact factor: 38.330

Review 7.  Roles and regulation of histone methylation in animal development.

Authors:  Ashwini Jambhekar; Abhinav Dhall; Yang Shi
Journal:  Nat Rev Mol Cell Biol       Date:  2019-07-02       Impact factor: 94.444

8.  Genome-scale DNA methylation maps of pluripotent and differentiated cells.

Authors:  Alexander Meissner; Tarjei S Mikkelsen; Hongcang Gu; Marius Wernig; Jacob Hanna; Andrey Sivachenko; Xiaolan Zhang; Bradley E Bernstein; Chad Nusbaum; David B Jaffe; Andreas Gnirke; Rudolf Jaenisch; Eric S Lander
Journal:  Nature       Date:  2008-07-06       Impact factor: 49.962

Review 9.  Histone modifications for human epigenome analysis.

Authors:  Hiroshi Kimura
Journal:  J Hum Genet       Date:  2013-06-06       Impact factor: 3.172

Review 10.  Writing, erasing and reading histone lysine methylations.

Authors:  Kwangbeom Hyun; Jongcheol Jeon; Kihyun Park; Jaehoon Kim
Journal:  Exp Mol Med       Date:  2017-04-28       Impact factor: 8.718

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  11 in total

Review 1.  Aneuploidy in mammalian oocytes and the impact of maternal ageing.

Authors:  Chloe Charalambous; Alexandre Webster; Melina Schuh
Journal:  Nat Rev Mol Cell Biol       Date:  2022-09-06       Impact factor: 113.915

Review 2.  Regulation, functions and transmission of bivalent chromatin during mammalian development.

Authors:  Trisha A Macrae; Julie Fothergill-Robinson; Miguel Ramalho-Santos
Journal:  Nat Rev Mol Cell Biol       Date:  2022-08-26       Impact factor: 113.915

3.  Methylome inheritance and enhancer dememorization reset an epigenetic gate safeguarding embryonic programs.

Authors:  Xiaotong Wu; Hongmei Zhang; Bingjie Zhang; Yu Zhang; Qiuyan Wang; Weimin Shen; Xi Wu; Lijia Li; Weikun Xia; Ryohei Nakamura; Bofeng Liu; Feng Liu; Hiroyuki Takeda; Anming Meng; Wei Xie
Journal:  Sci Adv       Date:  2021-12-22       Impact factor: 14.136

4.  Experimental development of the epigenomic library construction method to elucidate the epigenetic diversity and causal relationship between epigenome and transcriptome at a single-cell level.

Authors:  Kyunghyuk Park; Min Chul Jeon; Bokyung Kim; Bukyoung Cha; Jong-Il Kim
Journal:  Genomics Inform       Date:  2022-03-31

5.  H3K36 dimethylation shapes the epigenetic interaction landscape by directing repressive chromatin modifications in embryonic stem cells.

Authors:  Haifen Chen; Bo Hu; Cynthia Horth; Eric Bareke; Phillip Rosenbaum; Sin Young Kwon; Jacinthe Sirois; Daniel N Weinberg; Faith M Robison; Benjamin A Garcia; Chao Lu; William A Pastor; Jacek Majewski
Journal:  Genome Res       Date:  2022-04-08       Impact factor: 9.438

6.  DNA methylation signature associated with Bohring-Opitz syndrome: a new tool for functional classification of variants in ASXL genes.

Authors:  Zain Awamleh; Eric Chater-Diehl; Sanaa Choufani; Elizabeth Wei; Rebecca R Kianmahd; Anna Yu; Lauren Chad; Gregory Costain; Wen-Hann Tan; Stephen W Scherer; Valerie A Arboleda; Bianca E Russell; Rosanna Weksberg
Journal:  Eur J Hum Genet       Date:  2022-04-01       Impact factor: 5.351

7.  An interplay between BRD4 and G9a regulates skeletal myogenesis.

Authors:  Naidi Yang; Dipanwita Das; Shilpa Rani Shankar; Pierre-Alexis Goy; Ernesto Guccione; Reshma Taneja
Journal:  Front Cell Dev Biol       Date:  2022-09-07

Review 8.  The landscape of aging.

Authors:  Yusheng Cai; Wei Song; Jiaming Li; Ying Jing; Chuqian Liang; Liyuan Zhang; Xia Zhang; Wenhui Zhang; Beibei Liu; Yongpan An; Jingyi Li; Baixue Tang; Siyu Pei; Xueying Wu; Yuxuan Liu; Cheng-Le Zhuang; Yilin Ying; Xuefeng Dou; Yu Chen; Fu-Hui Xiao; Dingfeng Li; Ruici Yang; Ya Zhao; Yang Wang; Lihui Wang; Yujing Li; Shuai Ma; Si Wang; Xiaoyuan Song; Jie Ren; Liang Zhang; Jun Wang; Weiqi Zhang; Zhengwei Xie; Jing Qu; Jianwei Wang; Yichuan Xiao; Ye Tian; Gelin Wang; Ping Hu; Jing Ye; Yu Sun; Zhiyong Mao; Qing-Peng Kong; Qiang Liu; Weiguo Zou; Xiao-Li Tian; Zhi-Xiong Xiao; Yong Liu; Jun-Ping Liu; Moshi Song; Jing-Dong J Han; Guang-Hui Liu
Journal:  Sci China Life Sci       Date:  2022-09-02       Impact factor: 10.372

9.  SMYD3 promotes aerobic glycolysis in diffuse large B-cell lymphoma via H3K4me3-mediated PKM2 transcription.

Authors:  Tian Tian; Jiwei Li; Di Shi; Yupeng Zeng; Baohua Yu; Xiaoqiu Li; Ping Wei; Xiaoyan Zhou
Journal:  Cell Death Dis       Date:  2022-09-03       Impact factor: 9.685

10.  Epigenetic connection between gut microbiota-derived short-chain fatty acids and chromatin histone modification in kidney diseases.

Authors:  Lingzhi Li; Shenyu Zhao; Ting Xiang; Han Feng; Liang Ma; Ping Fu
Journal:  Chin Med J (Engl)       Date:  2022-07-20       Impact factor: 6.133

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