Literature DB >> 34547238

Metabolic channeling: predictions, deductions, and evidence.

Vidhi Pareek1, Zhou Sha2, Jingxuan He2, Ned S Wingreen3, Stephen J Benkovic4.   

Abstract

With the elucidation of myriad anabolic and catabolic enzyme-catalyzed cellular pathways crisscrossing each other, an obvious question arose: how could these networks operate with maximal catalytic efficiency and minimal interference? A logical answer was the postulate of metabolic channeling, which in its simplest embodiment assumes that the product generated by one enzyme passes directly to a second without diffusion into the surrounding medium. This tight coupling of activities might increase a pathway's metabolic flux and/or serve to sequester unstable/toxic/reactive intermediates as well as prevent their access to other networks. Here, we present evidence for this concept, commencing with enzymes that feature a physical molecular tunnel, to multi-enzyme complexes that retain pathway substrates through electrostatics or enclosures, and finally to metabolons that feature collections of enzymes assembled into clusters with variable stoichiometric composition. Lastly, we discuss the advantages of reversibly assembled metabolons in the context of the purinosome, the purine biosynthesis metabolon.
Copyright © 2021 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  membrane-less compartmentalization; metabolic channeling; metabolon; molecular tunnel; purinosome

Mesh:

Substances:

Year:  2021        PMID: 34547238      PMCID: PMC8485759          DOI: 10.1016/j.molcel.2021.08.030

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   19.328


  109 in total

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Authors:  F M Raushel; J B Thoden; H M Holden
Journal:  Biochemistry       Date:  1999-06-22       Impact factor: 3.162

2.  Crystal structures of a mutant (betaK87T) tryptophan synthase alpha2beta2 complex with ligands bound to the active sites of the alpha- and beta-subunits reveal ligand-induced conformational changes.

Authors:  S Rhee; K D Parris; C C Hyde; S A Ahmed; E W Miles; D R Davies
Journal:  Biochemistry       Date:  1997-06-24       Impact factor: 3.162

3.  Purinosome formation as a function of the cell cycle.

Authors:  Chung Yu Chan; Hong Zhao; Raymond J Pugh; Anthony M Pedley; Jarrod French; Sara A Jones; Xiaowei Zhuang; Hyder Jinnah; Tony Jun Huang; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2015-01-20       Impact factor: 11.205

4.  Microtubule-directed transport of purine metabolons drives their cytosolic transit to mitochondria.

Authors:  Chung Yu Chan; Anthony M Pedley; Doory Kim; Chenglong Xia; Xiaowei Zhuang; Stephen J Benkovic
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-03       Impact factor: 11.205

Review 5.  Getting to know the neighborhood: using proximity-dependent biotinylation to characterize protein complexes and map organelles.

Authors:  Anne-Claude Gingras; Kento T Abe; Brian Raught
Journal:  Curr Opin Chem Biol       Date:  2018-11-17       Impact factor: 8.822

6.  Exchange of K+ or Cs+ for Na+ induces local and long-range changes in the three-dimensional structure of the tryptophan synthase alpha2beta2 complex.

Authors:  S Rhee; K D Parris; S A Ahmed; E W Miles; D R Davies
Journal:  Biochemistry       Date:  1996-04-02       Impact factor: 3.162

7.  Sequestration-Mediated Downregulation of de Novo Purine Biosynthesis by AMPK.

Authors:  Danielle L Schmitt; Yun-Ju Cheng; Junyong Park; Songon An
Journal:  ACS Chem Biol       Date:  2016-05-11       Impact factor: 5.100

Review 8.  Liquid-liquid phase separation: a principal organizer of the cell's biochemical activity architecture.

Authors:  Jason Z Zhang; Sohum Mehta; Jin Zhang
Journal:  Trends Pharmacol Sci       Date:  2021-08-06       Impact factor: 14.819

Review 9.  Regulation of Cellular Metabolism through Phase Separation of Enzymes.

Authors:  Manoël Prouteau; Robbie Loewith
Journal:  Biomolecules       Date:  2018-12-03

10.  Pathway thermodynamics highlights kinetic obstacles in central metabolism.

Authors:  Elad Noor; Arren Bar-Even; Avi Flamholz; Ed Reznik; Wolfram Liebermeister; Ron Milo
Journal:  PLoS Comput Biol       Date:  2014-02-20       Impact factor: 4.475

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  4 in total

1.  Metabolic Determinants of Cardiomyocyte Proliferation.

Authors:  Tamer M A Mohamed; Riham Abouleisa; Bradford G Hill
Journal:  Stem Cells       Date:  2022-05-27       Impact factor: 5.845

Review 2.  The Purinosome: A Case Study for a Mammalian Metabolon.

Authors:  Anthony M Pedley; Vidhi Pareek; Stephen J Benkovic
Journal:  Annu Rev Biochem       Date:  2022-03-23       Impact factor: 27.258

3.  Purine biosynthetic enzymes assemble into liquid-like condensates dependent on the activity of chaperone protein HSP90.

Authors:  Anthony M Pedley; Jack P Boylan; Chung Yu Chan; Erin L Kennedy; Minjoung Kyoung; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2022-03-18       Impact factor: 5.486

4.  Multienzyme interactions of the de novo purine biosynthetic protein PAICS facilitate purinosome formation and metabolic channeling.

Authors:  Jingxuan He; Ling-Nan Zou; Vidhi Pareek; Stephen J Benkovic
Journal:  J Biol Chem       Date:  2022-03-21       Impact factor: 5.486

  4 in total

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