| Literature DB >> 34515749 |
Erinna F Lee1,2,3, W Douglas Fairlie1,2,3.
Abstract
The discovery of a new class of small molecule compounds that target the BCL-2 family of anti-apoptotic proteins is one of the great success stories of basic science leading to translational outcomes in the last 30 years. The eponymous BCL-2 protein was identified over 30 years ago due to its association with cancer. However, it was the unveiling of the biochemistry and structural biology behind it and its close relatives' mechanism(s)-of-action that provided the inspiration for what are now known as 'BH3-mimetics', the first clinically approved drugs designed to specifically inhibit protein-protein interactions. Herein, we chart the history of how these drugs were discovered, their evolution and application in cancer treatment.Entities:
Keywords: BCL-2; BCL-XL; BH3-mimetics; MCL-1; apoptosis
Mesh:
Substances:
Year: 2021 PMID: 34515749 PMCID: PMC8589430 DOI: 10.1042/BST20210749
Source DB: PubMed Journal: Biochem Soc Trans ISSN: 0300-5127 Impact factor: 5.407
Key BH3-mimetics leading to the clinical applications or as tool compounds
| Compound | Discovery | Notes | Clinical application | References |
|---|---|---|---|---|
| Pan-specific BCL-2/BCL-XL | ||||
| ABT-737 | Fragment library screen using SAR-by-NMR | First bona fide BH3-mimetic | No — tool compound | [ |
| ABT-263 (Navitoclax) | Modification of three sites on ABT-737 to improve PK properties | First orally bioavailable BH3-mimetic. First BH3-mimetic to enter clinical trials | Yes — clinical trials initially halted due to dose-limiting thrombocytopaenia though now being explored in other cancer types | [ |
| AZD4320/AZD0466 | Structure-guided modification of Navitoclax to add solubilising moieties | AZD4320 is now formulated as a novel nanoparticle, AZD0466 for clinical application | Yes — trials (solid and haematological). AZD0466 administered intravenously and only induces transient thrombocytopaenia | [ |
| BCL-XL-specific | ||||
| WEHI-539 | High thoughput small molecule screen against BCL-W | First potent BCL-XL-specific compound | No — tool compound | [ |
| A-115463, A-1331852, A-1293102 | Iterative SAR-by-NMR coupled with structure-guided design using WEHI-539 as starting point | A-1331852 was the first orally-available BCL-XL-specific BH3-mimetic with potent | No — useful tool compounds for determining tumour BCL-XL dependence | [ |
| PZ15227, DT2216 | Modification of ABT-263 linking it to E3 ligase ligands for cereblon (PZ15227) and Von Hippel Landau protein (DT2216). | PROTAC forms of ABT-263 that degrade BCL-XL and can overcome thrombocytopaenia as E3 ligases are poorly expressed in platelets. Conversion of ABT-263 to PROTACs makes it more specific for BCL-XL. | No — tool compounds | [ |
| BCL-2-specific | ||||
| ABT-199 (Venetoclax), ABBV-167 | Structure-guided design based on Navitoclax | First BCL-2-specific compound. ABBV-167 is a pro-drug form that increases solubility and oral exposure. | Yes — first approved BH3-mimetic. Currently being used for haematological cancers but being trial in various others and solid cancers | [ |
| S55746/BCL201 | Structure-guided design based on literature compound | Potent BCL-2 specific inhibitor | Yes — trials in haematological cancers | [ |
| MCL-1-specific | ||||
| A-1210477 | SAR-by-NMR fragment screen | First MCL-1-specific compound reported with (modest) biological activity | No — tool compound | [ |
| S63845/MIK665 | Fragment-based screen | First MCL-1-specific compound reported with potent | Yes — trials of MIK665 in haematological malignancies | [ |
| AMG-176/AMG-397 | High throughput screen plus structure-guided design (AMG-176). Details not reported for AMG-397. | Potent MCL-1 inhibitor with | Yes — trials halted for both due to reported cardiotoxicity observed with AMG-397. | [ |
| AZD5991 | Structure-guided design | Potent MCL-1 inhibitor with | Yes trials in haematological malignancies | [ |
| sMCL1–2, C3, C5 | Modification of MCl-1 inhibitor A-1210477 (sMCL-1–2), or MCL-1/BCL-2 dual inhibitors S1–6 or Nap-1 (C3, C5), linking them to E3 ligase ligand for cereblon | PROTAC forms that induce MCL-1 degradation. | No — tool compounds | [ |
Figure 1.Discovery of the first bona fide BCL-XL/BCL-2 targeting BH3-mimetics.
(A) Crystal structure of BCL-XL (grey) bound to a peptide corresponding to the BIM BH3 domain (blue; PDB: 3FDL) showing the conserved hydrophobic residues (h1–h4) engaging four pockets (p1–p4) along a large surface groove. All BH3 domains bind to pro-survival proteins similarly. (B) Chemical structures showing the evolution of ABT-737 to Navitoclax then Venetoclax. (C) Overlay of ABT-737 (pink) with BIM BH3 (blue) showing how the compound mainly targets (D) the pockets engaged by the h2 and h4 residues of BCL-XL (grey; PDB: 2YXJ). Close-up of (E) ABT-737 (pink) bound to BCL-XL (grey) and (F) Venetoclax (yellow) bound to BCL-2 (grey; PDB: 6O0K).
Figure 2.MCL-1 targeting compounds and next-generation BH3-mimetics.
(A) Structure of a peptide corresponding to the BIM BH3 domain (blue) bound to MCL-1 (grey; PDB: 2NL9) overlayed with S63845 (cyan) from a structure of it in complex with MCL-1 (PDB: 5LOF). (B) Close-up of how S63845 (cyan) engages the p2 and p4 pockets of MCL-1 (grey; PDB: 5LOF). Note the interaction at p2 is somewhat different to that of ABT-737 and Venetoclax (see Figure 1E,F). This is further illustrated in (C) showing an overlay of the BIM BH3 helix (blue) with S63845 (cyan), ABT-737 (pink) and Venetoclax (yellow). (D) Schematic illustrating AZD0466 consisting of Starpharma's polylysine dendrimer and AstraZeneca's BCL-XL/BCL-2 dual inhibitor, AZD4320. (E) Chemical structure of the DT2116 PROTAC targeting BCL-XL.