Literature DB >> 19229915

High-resolution structural characterization of a helical alpha/beta-peptide foldamer bound to the anti-apoptotic protein Bcl-xL.

Erinna F Lee1, Jack D Sadowsky, Brian J Smith, Peter E Czabotar, Kimberly J Peterson-Kaufman, Peter M Colman, Samuel H Gellman, W Douglas Fairlie.   

Abstract

Get into the groove: The first high-resolution structure of a foldamer bound to a protein target is described (see picture; foldamer in sticks). The foldamer consists of alpha- and beta-amino acid residues and is bound to the anti-apoptotic protein Bcl-x(L). The overall binding mode and key interactions observed in the foldamer/Bcl-x(L) complex mimic those seen in complexes of Bcl-x(L) with natural alpha-peptide ligands. Additional contacts in the foldamer/Bcl-x(L) complex involving beta-amino acid residues appear to contribute to binding affinity.

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Year:  2009        PMID: 19229915      PMCID: PMC2843084          DOI: 10.1002/anie.200805761

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  27 in total

Review 1.  beta-Peptides: from structure to function.

Authors:  R P Cheng; S H Gellman; W F DeGrado
Journal:  Chem Rev       Date:  2001-10       Impact factor: 60.622

Review 2.  The Bcl2 family: regulators of the cellular life-or-death switch.

Authors:  Suzanne Cory; Jerry M Adams
Journal:  Nat Rev Cancer       Date:  2002-09       Impact factor: 60.716

3.  Helical beta-peptide inhibitors of the p53-hDM2 interaction.

Authors:  Joshua A Kritzer; James D Lear; Michael E Hodsdon; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2004-08-11       Impact factor: 15.419

Review 4.  Small-molecule inhibitors of protein-protein interactions: progressing towards the dream.

Authors:  Michelle R Arkin; James A Wells
Journal:  Nat Rev Drug Discov       Date:  2004-04       Impact factor: 84.694

5.  Chimeric (alpha/beta + alpha)-peptide ligands for the BH3-recognition cleft of Bcl-XL: critical role of the molecular scaffold in protein surface recognition.

Authors:  Jack D Sadowsky; Margaret A Schmitt; Hee-Seung Lee; Naoki Umezawa; Shaomeng Wang; York Tomita; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2005-08-31       Impact factor: 15.419

6.  Structure of Bcl-xL-Bak peptide complex: recognition between regulators of apoptosis.

Authors:  M Sattler; H Liang; D Nettesheim; R P Meadows; J E Harlan; M Eberstadt; H S Yoon; S B Shuker; B S Chang; A J Minn; C B Thompson; S W Fesik
Journal:  Science       Date:  1997-02-14       Impact factor: 47.728

7.  Inhibiting HIV fusion with a beta-peptide foldamer.

Authors:  Olen M Stephens; Sunghwan Kim; Brett D Welch; Michael E Hodsdon; Michael S Kay; Alanna Schepartz
Journal:  J Am Chem Soc       Date:  2005-09-28       Impact factor: 15.419

8.  Activation of apoptosis in vivo by a hydrocarbon-stapled BH3 helix.

Authors:  Loren D Walensky; Andrew L Kung; Iris Escher; Thomas J Malia; Scott Barbuto; Renee D Wright; Gerhard Wagner; Gregory L Verdine; Stanley J Korsmeyer
Journal:  Science       Date:  2004-09-03       Impact factor: 47.728

Review 9.  Structural biology of the Bcl-2 family of proteins.

Authors:  Andrew M Petros; Edward T Olejniczak; Stephen W Fesik
Journal:  Biochim Biophys Acta       Date:  2004-03-01

10.  Bcl-XL mutations suppress cellular sensitivity to antimycin A.

Authors:  Michael K Manion; Jason W O'Neill; Chris D Giedt; Kristine M Kim; Kam Y Z Zhang; David M Hockenbery
Journal:  J Biol Chem       Date:  2003-10-08       Impact factor: 5.157

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  47 in total

1.  Structural changes in the BH3 domain of SOUL protein upon interaction with the anti-apoptotic protein Bcl-xL.

Authors:  Emmanuele Ambrosi; Stefano Capaldi; Michele Bovi; Gianmaria Saccomani; Massimiliano Perduca; Hugo L Monaco
Journal:  Biochem J       Date:  2011-09-01       Impact factor: 3.857

2.  Mutation to Bax beyond the BH3 domain disrupts interactions with pro-survival proteins and promotes apoptosis.

Authors:  Peter E Czabotar; Erinna F Lee; Geoff V Thompson; Ahmad Z Wardak; W Douglas Fairlie; Peter M Colman
Journal:  J Biol Chem       Date:  2011-01-03       Impact factor: 5.157

3.  Dynamics of the BH3-Only Protein Binding Interface of Bcl-xL.

Authors:  Xiaorong Liu; Alex Beugelsdijk; Jianhan Chen
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

4.  α/β-Peptide Foldamers Targeting Intracellular Protein-Protein Interactions with Activity in Living Cells.

Authors:  James W Checco; Erinna F Lee; Marco Evangelista; Nerida J Sleebs; Kelly Rogers; Anne Pettikiriarachchi; Nadia J Kershaw; Geoffrey A Eddinger; David G Belair; Julia L Wilson; Chelcie H Eller; Ronald T Raines; William L Murphy; Brian J Smith; Samuel H Gellman; W Douglas Fairlie
Journal:  J Am Chem Soc       Date:  2015-08-28       Impact factor: 15.419

5.  Mcl-1-Bim complexes accommodate surprising point mutations via minor structural changes.

Authors:  Emiko Fire; Stefano V Gullá; Robert A Grant; Amy E Keating
Journal:  Protein Sci       Date:  2010-03       Impact factor: 6.725

6.  Dual-site interactions of p53 protein transactivation domain with anti-apoptotic Bcl-2 family proteins reveal a highly convergent mechanism of divergent p53 pathways.

Authors:  Ji-Hyang Ha; Jae-Sun Shin; Mi-Kyung Yoon; Min-Sung Lee; Fahu He; Kwang-Hee Bae; Ho Sup Yoon; Chong-Kil Lee; Sung Goo Park; Yutaka Muto; Seung-Wook Chi
Journal:  J Biol Chem       Date:  2013-01-11       Impact factor: 5.157

Review 7.  Inhibition of α-helix-mediated protein-protein interactions using designed molecules.

Authors:  Valeria Azzarito; Kérya Long; Natasha S Murphy; Andrew J Wilson
Journal:  Nat Chem       Date:  2013-03       Impact factor: 24.427

8.  Characteristic structural parameters for the γ-peptide 14-helix: importance of subunit preorganization.

Authors:  Li Guo; Weicheng Zhang; Andrew G Reidenbach; Michael W Giuliano; Ilia A Guzei; Lara C Spencer; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2011-05-12       Impact factor: 15.336

9.  Detection and analysis of chimeric tertiary structures by backbone thioester exchange: packing of an alpha helix against an alpha/beta-peptide helix.

Authors:  Joshua L Price; Erik B Hadley; Jay D Steinkruger; Samuel H Gellman
Journal:  Angew Chem Int Ed Engl       Date:  2010       Impact factor: 15.336

10.  Structure-based redesign of the binding specificity of anti-apoptotic Bcl-x(L).

Authors:  T Scott Chen; Hector Palacios; Amy E Keating
Journal:  J Mol Biol       Date:  2012-11-12       Impact factor: 5.469

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