Literature DB >> 34509669

In vivo somatic cell base editing and prime editing.

Gregory A Newby1, David R Liu2.   

Abstract

Recent advances in genome editing technologies have magnified the prospect of single-dose cures for many genetic diseases. For most genetic disorders, precise DNA correction is anticipated to best treat patients. To install desired DNA changes with high precision, our laboratory developed base editors (BEs), which can correct the four most common single-base substitutions, and prime editors, which can install any substitution, insertion, and/or deletion over a stretch of dozens of base pairs. Compared to nuclease-dependent editing approaches that involve double-strand DNA breaks (DSBs) and often result in a large percentage of uncontrolled editing outcomes, such as mixtures of insertions and deletions (indels), larger deletions, and chromosomal rearrangements, base editors and prime editors often offer greater efficiency with fewer byproducts in slowly dividing or non-dividing cells, such as those that make up most of the cells in adult animals. Both viral and non-viral in vivo delivery methods have now been used to deliver base editors and prime editors in animal models, establishing that base editors and prime editors can serve as effective agents for in vivo therapeutic genome editing in animals. This review summarizes examples of in vivo somatic cell (post-natal) base editing and prime editing and prospects for future development.
Copyright © 2021 The American Society of Gene and Cell Therapy. Published by Elsevier Inc. All rights reserved.

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Year:  2021        PMID: 34509669      PMCID: PMC8571176          DOI: 10.1016/j.ymthe.2021.09.002

Source DB:  PubMed          Journal:  Mol Ther        ISSN: 1525-0016            Impact factor:   11.454


  202 in total

1.  Long-term correction of hemophilia B using adenoviral delivery of CRISPR/Cas9.

Authors:  Calvin J Stephens; Elvin J Lauron; Elena Kashentseva; Zhi Hong Lu; Wayne M Yokoyama; David T Curiel
Journal:  J Control Release       Date:  2019-02-13       Impact factor: 9.776

Review 2.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.

Authors:  Michael R Lieber
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

3.  Therapeutic base editing of human hematopoietic stem cells.

Authors:  Jing Zeng; Yuxuan Wu; Chunyan Ren; Jasmine Bonanno; Anne H Shen; Devlin Shea; Jason M Gehrke; Kendell Clement; Kevin Luk; Qiuming Yao; Rachel Kim; Scot A Wolfe; John P Manis; Luca Pinello; J Keith Joung; Daniel E Bauer
Journal:  Nat Med       Date:  2020-03-16       Impact factor: 53.440

4.  Conservative homologous recombination preferentially repairs DNA double-strand breaks in the S phase of the cell cycle in human cells.

Authors:  Nasrollah Saleh-Gohari; Thomas Helleday
Journal:  Nucleic Acids Res       Date:  2004-07-13       Impact factor: 16.971

5.  Gene editing of CCR5 in autologous CD4 T cells of persons infected with HIV.

Authors:  Pablo Tebas; David Stein; Winson W Tang; Ian Frank; Shelley Q Wang; Gary Lee; S Kaye Spratt; Richard T Surosky; Martin A Giedlin; Geoff Nichol; Michael C Holmes; Philip D Gregory; Dale G Ando; Michael Kalos; Ronald G Collman; Gwendolyn Binder-Scholl; Gabriela Plesa; Wei-Ting Hwang; Bruce L Levine; Carl H June
Journal:  N Engl J Med       Date:  2014-03-06       Impact factor: 91.245

6.  Permanent alteration of PCSK9 with in vivo CRISPR-Cas9 genome editing.

Authors:  Qiurong Ding; Alanna Strong; Kevin M Patel; Sze-Ling Ng; Bridget S Gosis; Stephanie N Regan; Chad A Cowan; Daniel J Rader; Kiran Musunuru
Journal:  Circ Res       Date:  2014-06-10       Impact factor: 17.367

7.  Adeno-associated virus (AAV) vectors achieve prolonged transgene expression in mouse myocardium and arteries in vivo: a comparative study with adenovirus vectors.

Authors:  Giuseppe Vassalli; Hansruedi Büeler; Jean Dudler; Ludwig K von Segesser; Lukas Kappenberger
Journal:  Int J Cardiol       Date:  2003-08       Impact factor: 4.164

8.  Development of a gene-editing approach to restore vision loss in Leber congenital amaurosis type 10.

Authors:  Morgan L Maeder; Michael Stefanidakis; Christopher J Wilson; Reshica Baral; Luis Alberto Barrera; George S Bounoutas; David Bumcrot; Hoson Chao; Dawn M Ciulla; Jennifer A DaSilva; Abhishek Dass; Vidya Dhanapal; Tim J Fennell; Ari E Friedland; Georgia Giannoukos; Sebastian W Gloskowski; Alexandra Glucksmann; Gregory M Gotta; Hariharan Jayaram; Scott J Haskett; Bei Hopkins; Joy E Horng; Shivangi Joshi; Eugenio Marco; Rina Mepani; Deepak Reyon; Terence Ta; Diana G Tabbaa; Steven J Samuelsson; Shen Shen; Maxwell N Skor; Pam Stetkiewicz; Tongyao Wang; Clifford Yudkoff; Vic E Myer; Charles F Albright; Haiyan Jiang
Journal:  Nat Med       Date:  2019-01-21       Impact factor: 53.440

Review 9.  Engineering precision nanoparticles for drug delivery.

Authors:  Michael J Mitchell; Margaret M Billingsley; Rebecca M Haley; Marissa E Wechsler; Nicholas A Peppas; Robert Langer
Journal:  Nat Rev Drug Discov       Date:  2020-12-04       Impact factor: 84.694

10.  CRISPR prime editing with ribonucleoprotein complexes in zebrafish and primary human cells.

Authors:  Karl Petri; Weiting Zhang; Junyan Ma; Andrea Schmidts; Hyunho Lee; Joy E Horng; Daniel Y Kim; Ibrahim C Kurt; Kendell Clement; Jonathan Y Hsu; Luca Pinello; Marcela V Maus; J Keith Joung; Jing-Ruey Joanna Yeh
Journal:  Nat Biotechnol       Date:  2021-04-29       Impact factor: 54.908

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  17 in total

1.  Adenine Base Editing In Vivo with a Single Adeno-Associated Virus Vector.

Authors:  Han Zhang; Nathan Bamidele; Pengpeng Liu; Ogooluwa Ojelabi; Xin D Gao; Tomás Rodriguez; Haoyang Cheng; Karen Kelly; Jonathan K Watts; Jun Xie; Guangping Gao; Scot A Wolfe; Wen Xue; Erik J Sontheimer
Journal:  GEN Biotechnol       Date:  2022-06-14

2.  Efficient in vivo base editing via single adeno-associated viruses with size-optimized genomes encoding compact adenine base editors.

Authors:  Jessie R Davis; Xiao Wang; Isaac P Witte; Tony P Huang; Jonathan M Levy; Aditya Raguram; Samagya Banskota; Nabil G Seidah; Kiran Musunuru; David R Liu
Journal:  Nat Biomed Eng       Date:  2022-07-28       Impact factor: 29.234

Review 3.  Designing and executing prime editing experiments in mammalian cells.

Authors:  Jordan L Doman; Alexander A Sousa; Peyton B Randolph; Peter J Chen; David R Liu
Journal:  Nat Protoc       Date:  2022-08-08       Impact factor: 17.021

Review 4.  Therapeutic in vivo delivery of gene editing agents.

Authors:  Aditya Raguram; Samagya Banskota; David R Liu
Journal:  Cell       Date:  2022-07-06       Impact factor: 66.850

5.  Precision genome editing in the eye.

Authors:  Susie Suh; Elliot H Choi; Aditya Raguram; David R Liu; Krzysztof Palczewski
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-19       Impact factor: 12.779

Review 6.  CRISPR-based genome editing through the lens of DNA repair.

Authors:  Tarun S Nambiar; Lou Baudrier; Pierre Billon; Alberto Ciccia
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

7.  An engineered prime editor with enhanced editing efficiency in plants.

Authors:  Yuan Zong; Yijing Liu; Chenxiao Xue; Boshu Li; Xiangyang Li; Yanpeng Wang; Ji Li; Guanwen Liu; Xingxu Huang; Xiaofeng Cao; Caixia Gao
Journal:  Nat Biotechnol       Date:  2022-03-24       Impact factor: 68.164

8.  Engineered virus-like particles for efficient in vivo delivery of therapeutic proteins.

Authors:  Samagya Banskota; Aditya Raguram; Susie Suh; Samuel W Du; Jessie R Davis; Elliot H Choi; Xiao Wang; Sarah C Nielsen; Gregory A Newby; Peyton B Randolph; Mark J Osborn; Kiran Musunuru; Krzysztof Palczewski; David R Liu
Journal:  Cell       Date:  2022-01-11       Impact factor: 66.850

Review 9.  Engineering the next-generation of CAR T-cells with CRISPR-Cas9 gene editing.

Authors:  Alexander Dimitri; Friederike Herbst; Joseph A Fraietta
Journal:  Mol Cancer       Date:  2022-03-18       Impact factor: 27.401

Review 10.  Current applications and future perspective of CRISPR/Cas9 gene editing in cancer.

Authors:  Si-Wei Wang; Chao Gao; Yi-Min Zheng; Li Yi; Jia-Cheng Lu; Xiao-Yong Huang; Jia-Bin Cai; Peng-Fei Zhang; Yue-Hong Cui; Ai-Wu Ke
Journal:  Mol Cancer       Date:  2022-02-21       Impact factor: 27.401

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