Literature DB >> 34507991

Local thermodynamics govern formation and dissolution of Caenorhabditis elegans P granule condensates.

Anatol W Fritsch1, Andrés F Diaz-Delgadillo2, Omar Adame-Arana3,4, Carsten Hoege1, Matthäus Mittasch1,5, Moritz Kreysing1, Mark Leaver1, Anthony A Hyman1,6,7, Frank Jülicher3,6,7, Christoph A Weber8,6.   

Abstract

Membraneless compartments, also known as condensates, provide chemically distinct environments and thus spatially organize the cell. A well-studied example of condensates is P granules in the roundworm Caenorhabditis elegans that play an important role in the development of the germline. P granules are RNA-rich protein condensates that share the key properties of liquid droplets such as a spherical shape, the ability to fuse, and fast diffusion of their molecular components. An outstanding question is to what extent phase separation at thermodynamic equilibrium is appropriate to describe the formation of condensates in an active cellular environment. To address this question, we investigate the response of P granule condensates in living cells to temperature changes. We observe that P granules dissolve upon increasing the temperature and recondense upon lowering the temperature in a reversible manner. Strikingly, this temperature response can be captured by in vivo phase diagrams that are well described by a Flory-Huggins model at thermodynamic equilibrium. This finding is surprising due to active processes in a living cell. To address the impact of such active processes on intracellular phase separation, we discuss temperature heterogeneities. We show that, for typical estimates of the density of active processes, temperature represents a well-defined variable and that mesoscopic volume elements are at local thermodynamic equilibrium. Our findings provide strong evidence that P granule assembly and disassembly are governed by phase separation based on local thermal equilibria where the nonequilibrium nature of the cytoplasm is manifested on larger scales.

Entities:  

Keywords:  P granules; in vivo phase diagram; phase separation; temperature

Mesh:

Substances:

Year:  2021        PMID: 34507991      PMCID: PMC8449359          DOI: 10.1073/pnas.2102772118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  27 in total

1.  Mapping Local and Global Liquid Phase Behavior in Living Cells Using Photo-Oligomerizable Seeds.

Authors:  Dan Bracha; Mackenzie T Walls; Ming-Tzo Wei; Lian Zhu; Martin Kurian; José L Avalos; Jared E Toettcher; Clifford P Brangwynne
Journal:  Cell       Date:  2018-11-29       Impact factor: 41.582

2.  Temperature Dependence of Cell Division Timing Accounts for a Shift in the Thermal Limits of C. elegans and C. briggsae.

Authors:  Maria L Begasse; Mark Leaver; Federico Vazquez; Stephan W Grill; Anthony A Hyman
Journal:  Cell Rep       Date:  2015-02-05       Impact factor: 9.423

3.  Temperature dependent properties of a kinesin-3 motor protein from Thermomyces lanuginosus.

Authors:  Susan B Rivera; Steven J Koch; Joseph M Bauer; J Matthew Edwards; George D Bachand
Journal:  Fungal Genet Biol       Date:  2007-02-21       Impact factor: 3.495

Review 4.  P granule assembly and function in Caenorhabditis elegans germ cells.

Authors:  Dustin Updike; Susan Strome
Journal:  J Androl       Date:  2009-10-29

5.  Hydrodynamic theory of active matter.

Authors:  Frank Jülicher; Stephan W Grill; Guillaume Salbreux
Journal:  Rep Prog Phys       Date:  2018-03-15

6.  Efficient marker-free recovery of custom genetic modifications with CRISPR/Cas9 in Caenorhabditis elegans.

Authors:  Joshua A Arribere; Ryan T Bell; Becky X H Fu; Karen L Artiles; Phil S Hartman; Andrew Z Fire
Journal:  Genetics       Date:  2014-08-26       Impact factor: 4.562

7.  Systematic functional analysis of the Caenorhabditis elegans genome using RNAi.

Authors:  Ravi S Kamath; Andrew G Fraser; Yan Dong; Gino Poulin; Richard Durbin; Monica Gotta; Alexander Kanapin; Nathalie Le Bot; Sergio Moreno; Marc Sohrmann; David P Welchman; Peder Zipperlen; Julie Ahringer
Journal:  Nature       Date:  2003-01-16       Impact factor: 49.962

8.  DEAD-box ATPases are global regulators of phase-separated organelles.

Authors:  Maria Hondele; Ruchika Sachdev; Stephanie Heinrich; Juan Wang; Pascal Vallotton; Beatriz M A Fontoura; Karsten Weis
Journal:  Nature       Date:  2019-08-21       Impact factor: 49.962

9.  RNA is a critical element for the sizing and the composition of phase-separated RNA-protein condensates.

Authors:  Marina Garcia-Jove Navarro; Shunnichi Kashida; Racha Chouaib; Sylvie Souquere; Gérard Pierron; Dominique Weil; Zoher Gueroui
Journal:  Nat Commun       Date:  2019-07-19       Impact factor: 14.919

10.  A gel phase promotes condensation of liquid P granules in Caenorhabditis elegans embryos.

Authors:  Andrea Putnam; Madeline Cassani; Jarrett Smith; Geraldine Seydoux
Journal:  Nat Struct Mol Biol       Date:  2019-03-04       Impact factor: 15.369

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  10 in total

1.  Mesoscale structure-function relationships in mitochondrial transcriptional condensates.

Authors:  Marina Feric; Azadeh Sarfallah; Furqan Dar; Dmitry Temiakov; Rohit V Pappu; Tom Misteli
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-03       Impact factor: 12.779

Review 2.  Protein conformation and biomolecular condensates.

Authors:  Diego S Vazquez; Pamela L Toledo; Alejo R Gianotti; Mario R Ermácora
Journal:  Curr Res Struct Biol       Date:  2022-09-14

Review 3.  A conceptual framework for understanding phase separation and addressing open questions and challenges.

Authors:  Tanja Mittag; Rohit V Pappu
Journal:  Mol Cell       Date:  2022-06-07       Impact factor: 19.328

4.  A simple thermodynamic description of phase separation of Nup98 FG domains.

Authors:  Sheung Chun Ng; Dirk Görlich
Journal:  Nat Commun       Date:  2022-10-18       Impact factor: 17.694

Review 5.  Nuage condensates: accelerators or circuit breakers for sRNA silencing pathways?

Authors:  John Paul Tsu Ouyang; Geraldine Seydoux
Journal:  RNA       Date:  2021-11-12       Impact factor: 5.636

Review 6.  Perspective: a stirring role for metabolism in cells.

Authors:  José Losa; Simeon Leupold; Diego Alonso-Martinez; Petteri Vainikka; Sebastian Thallmair; Katarzyna M Tych; Siewert J Marrink; Matthias Heinemann
Journal:  Mol Syst Biol       Date:  2022-04       Impact factor: 11.429

7.  Phase-separating RNA-binding proteins form heterogeneous distributions of clusters in subsaturated solutions.

Authors:  Mrityunjoy Kar; Furqan Dar; Timothy J Welsh; Laura T Vogel; Ralf Kühnemuth; Anupa Majumdar; Georg Krainer; Titus M Franzmann; Simon Alberti; Claus A M Seidel; Tuomas P J Knowles; Anthony A Hyman; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2022-07-05       Impact factor: 12.779

Review 8.  Modulating biomolecular condensates: a novel approach to drug discovery.

Authors:  Diana M Mitrea; Matthäus Mittasch; Beatriz Ferreira Gomes; Isaac A Klein; Mark A Murcko
Journal:  Nat Rev Drug Discov       Date:  2022-08-16       Impact factor: 112.288

9.  Large RNP granules in Caenorhabditis elegans oocytes have distinct phases of RNA-binding proteins.

Authors:  Mohamed T Elaswad; Brooklynne M Watkins; Katherine G Sharp; Chloe Munderloh; Jennifer A Schisa
Journal:  G3 (Bethesda)       Date:  2022-08-25       Impact factor: 3.542

10.  Recent trends in studies of biomolecular phase separation.

Authors:  Chan-Geun Kim; Da-Eun Hwang; Rajeev Kumar; Min Chung; Yu-Gon Eom; Hyunji Kim; Da-Hyun Koo; Jeong-Mo Choi
Journal:  BMB Rep       Date:  2022-08       Impact factor: 5.041

  10 in total

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