Literature DB >> 36191226

Mesoscale structure-function relationships in mitochondrial transcriptional condensates.

Marina Feric1,2, Azadeh Sarfallah3, Furqan Dar4,5, Dmitry Temiakov3, Rohit V Pappu5, Tom Misteli1.   

Abstract

In live cells, phase separation is thought to organize macromolecules into membraneless structures known as biomolecular condensates. Here, we reconstituted transcription in condensates from purified mitochondrial components using optimized in vitro reaction conditions to probe the structure-function relationships of biomolecular condensates. We find that the core components of the mt-transcription machinery form multiphasic, viscoelastic condensates in vitro. Strikingly, the rates of condensate-mediated transcription are substantially lower than in solution. The condensate-mediated decrease in transcriptional rates is associated with the formation of vesicle-like structures that are driven by the production and accumulation of RNA during transcription. The generation of RNA alters the global phase behavior and organization of transcription components within condensates. Coarse-grained simulations of mesoscale structures at equilibrium show that the components stably assemble into multiphasic condensates and that the vesicles formed in vitro are the result of dynamical arrest. Overall, our findings illustrate the complex phase behavior of transcribing, multicomponent condensates, and they highlight the intimate, bidirectional interplay of structure and function in transcriptional condensates.

Entities:  

Keywords:  biomolecular condensates; mitochondrial genome; phase separation; transcription; vesicles

Mesh:

Substances:

Year:  2022        PMID: 36191226      PMCID: PMC9565167          DOI: 10.1073/pnas.2207303119

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   12.779


  74 in total

Review 1.  The organization and inheritance of the mitochondrial genome.

Authors:  Xin Jie Chen; Ronald A Butow
Journal:  Nat Rev Genet       Date:  2005-11       Impact factor: 53.242

2.  Composition and dynamics of human mitochondrial nucleoids.

Authors:  Nuria Garrido; Lorena Griparic; Eija Jokitalo; Jorma Wartiovaara; Alexander M van der Bliek; Johannes N Spelbrink
Journal:  Mol Biol Cell       Date:  2003-04       Impact factor: 4.138

Review 3.  Formation of Chromatin Subcompartments by Phase Separation.

Authors:  Fabian Erdel; Karsten Rippe
Journal:  Biophys J       Date:  2018-04-06       Impact factor: 4.033

4.  Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.

Authors:  Ann Boija; Isaac A Klein; Benjamin R Sabari; Alessandra Dall'Agnese; Eliot L Coffey; Alicia V Zamudio; Charles H Li; Krishna Shrinivas; John C Manteiga; Nancy M Hannett; Brian J Abraham; Lena K Afeyan; Yang E Guo; Jenna K Rimel; Charli B Fant; Jurian Schuijers; Tong Ihn Lee; Dylan J Taatjes; Richard A Young
Journal:  Cell       Date:  2018-11-15       Impact factor: 41.582

Review 5.  Engineering 3D genome organization.

Authors:  Haifeng Wang; Mengting Han; Lei S Qi
Journal:  Nat Rev Genet       Date:  2021-02-08       Impact factor: 53.242

6.  Extrachromosomal Nucleolus-Like Compartmentalization by a Plasmid-Borne Ribosomal RNA Operon and Its Role in Nucleoid Compaction.

Authors:  Carmen Mata Martin; Zhe Sun; Yan Ning Zhou; Ding Jun Jin
Journal:  Front Microbiol       Date:  2018-06-05       Impact factor: 5.640

7.  Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.

Authors:  Yang Eric Guo; John C Manteiga; Jonathan E Henninger; Benjamin R Sabari; Alessandra Dall'Agnese; Nancy M Hannett; Jan-Hendrik Spille; Lena K Afeyan; Alicia V Zamudio; Krishna Shrinivas; Brian J Abraham; Ann Boija; Tim-Michael Decker; Jenna K Rimel; Charli B Fant; Tong Ihn Lee; Ibrahim I Cisse; Phillip A Sharp; Dylan J Taatjes; Richard A Young
Journal:  Nature       Date:  2019-08-07       Impact factor: 49.962

8.  Deciphering how naturally occurring sequence features impact the phase behaviours of disordered prion-like domains.

Authors:  Anne Bremer; Mina Farag; Wade M Borcherds; Ivan Peran; Erik W Martin; Rohit V Pappu; Tanja Mittag
Journal:  Nat Chem       Date:  2021-12-20       Impact factor: 24.274

9.  Mitochondrial RNA granules: Compartmentalizing mitochondrial gene expression.

Authors:  Alexis A Jourdain; Erik Boehm; Kinsey Maundrell; Jean-Claude Martinou
Journal:  J Cell Biol       Date:  2016-03-07       Impact factor: 10.539

10.  Mitochondrial DNA stress primes the antiviral innate immune response.

Authors:  A Phillip West; William Khoury-Hanold; Matthew Staron; Michal C Tal; Cristiana M Pineda; Sabine M Lang; Megan Bestwick; Brett A Duguay; Nuno Raimundo; Donna A MacDuff; Susan M Kaech; James R Smiley; Robert E Means; Akiko Iwasaki; Gerald S Shadel
Journal:  Nature       Date:  2015-02-02       Impact factor: 49.962

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  1 in total

1.  Mesoscale structure-function relationships in mitochondrial transcriptional condensates.

Authors:  Marina Feric; Azadeh Sarfallah; Furqan Dar; Dmitry Temiakov; Rohit V Pappu; Tom Misteli
Journal:  Proc Natl Acad Sci U S A       Date:  2022-10-03       Impact factor: 12.779

  1 in total

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