| Literature DB >> 34493281 |
Tiebiao Liang1, Xianbo Zhang1, Anshan Liang1, Haiqing Wu1, Qi Wang2, Jun He1, Ming Long1, Tianbo Jin3,4.
Abstract
BACKGROUND: Coronary heart disease (CHD) is the leading cause of human death worldwide. Genetic factors play an important role in the occurrence of CHD. Our study is designed to investigate the influence of CYP7B1 polymorphisms on CHD risk.Entities:
Keywords: CYP7B1 polymorphisms; Coronary heart disease; Susceptibility
Mesh:
Year: 2021 PMID: 34493281 PMCID: PMC8422734 DOI: 10.1186/s12920-021-01067-x
Source DB: PubMed Journal: BMC Med Genomics ISSN: 1755-8794 Impact factor: 3.063
Basic characteristics of CHD patients and controls
| Characteristics | Cases (n = 508) | Controls (n = 510) | |
|---|---|---|---|
| 62.17 ± 10.34 | 61.12 ± 9.02 | 0.084 | |
| > 60 | 282 (55.5%) | 284 (55.7%) | |
| ≤ 60 | 226 (45.5%) | 226 (44.3%) | |
| 0.964 | |||
| Male | 334 (65.7%) | 336 (65.9%) | |
| Female | 174 (34.3%) | 174 (34.1%) | |
| Urea (mmol/l)c | 462.01 ± 4.50 | 456.63 ± 2.67 | 0.759 |
| Creatinine (umol/l)c | 384.73 ± 3.40 | 456.07 ± 3.50 | < 0.001 |
| Uric acid (umol/l)c | 431.26 ± 1.08 | 489.10 ± 2.07 | < 0.001 |
| Total-cholesterol (mmol/l)c | 369.60 ± 1.00 | 548.04 ± 1.05 | < 0.001 |
| Apolipoprotein AI (g/l)c | 247.13 ± 5.74 | 351.08 ± 0.70 | < 0.001 |
| Smoker | 231 (45.5%) | 115 (22.5%) | |
| Nonsmoker | 186 (36.6%) | 167 (32.7%) | |
| Missing | 91 (17.9%) | 228 (44.8%) | |
| Drinking | 52 (10.2%) | 124 (24.3%) | |
| Nondrinking | 306 (60.2%) | 135 (26.5%) | |
| Missing | 150 (29.6%) | 251 (49.2%) | |
| Diabetes | 190 (37.4%) | ||
| Non diabetes | 318 (62.6%) | ||
| Hypertension | 362 (71.3%) | ||
| Normal tension | 146 (28.7%) |
pa value was calculated by Student ′s t-test. pb value was calculated by Pearson ′s χ2 test
pc Mann–whitney test is used
Allele frequencies among CYP7B1 SNPs
| SNP ID | Chromosome position | Alleles (minor/major) | MAF | O (HET) | E (HET) | HaploReg v4.1 | ||
|---|---|---|---|---|---|---|---|---|
| Case | Control | |||||||
| rs7836768 | chr8: 64,474,910 | 0.413 | 0.396 | 0.514 | 0.478 | 0.115 | Enhancer histone marks, DNAse, Motifs changed | |
| rs62519827 | chr8: 64,569,390 | 0.003 | 0.005 | 0.010 | 0.010 | 1.000 | Siphy cons, Enhancer histone marks, DNAse, Motifs changed | |
| rs62519841 | chr8: 64,588,948 | 0.005 | 0.005 | 0.010 | 0.010 | 1.000 | Motifs changed | |
| rs10808739 | chr8: 64,727,703 | 0.029 | 0.042 | 0.084 | 0.081 | 1.000 | DNAse, NHGRI/EBI GWAS hits | |
| rs13276608 | chr8: 64,769,294 | 0.001 | 0.003 | 0.006 | 0.006 | 1.000 | Motifs changed, Selected eQTL genes | |
| rs6472155 | chr8: 64,817,650 | 0.286 | 0.264 | 0.422 | 0.388 | 0.067 | Promoter histone marks, Enhancer histone marks, DNAse, Proteins bound, Motifs changed, NHGRI/EBI GWAS hits, GRASP QTL hits, Selected eQTL genes | |
| rs2980003 | chr8: 65,087,728 | 0.357 | 0.346 | 0.452 | 0.452 | 1.000 | DNAse, NHGRI/EBI GWAS hits | |
SNP, Single nucleotide polymorphisms; MAF, Minor allele frequency; HWE, Hardy–Weinberg equilibrium; O (HET), Observed heterozygosity; E (HET), Expected heterozygosity; OR, Odds ratio; 95% CI, 95% confidence intervals
pa values were calculated by exact test
Association of CYP7B1 polymorphisms with CHD risk
| SNP ID | Model | Allele/Genotype | Case N | Control N | OR (95% CI) | |
|---|---|---|---|---|---|---|
| rs7836768 | Allele | 595 | 616 | 1 | ||
| 419 | 404 | 1.07 (0.90–1.28) | 0.431 | |||
| Codominant | 239 | 71 | 0.90 (0.69–1.19) | 0.464 | ||
| 90 | 262 | 1.27 (0.87–1.84) | 0.220 | |||
| 178 | 177 | 1 | ||||
| Dominant | 329 | 333 | 0.98 (0.76–1.27) | 0.878 | ||
| Recessive | 417 | 248 | 1 | |||
| 90 | 262 | 1.34 (0.96–1.89) | 0.090 | |||
| Log-additive | – | – | – | 1.08 (0.90–1.29) | 0.427 | |
| rs6472155 | Allele | 725 | 751 | 1 | ||
| 291 | 269 | 1.12 (0.92–1.36) | 0.252 | |||
| Codominant | 219 | 215 | 1.08 (0.83–1.39) | 0.575 | ||
| 36 | 27 | 1.39 (0.82–2.35) | 0.226 | |||
| 253 | 268 | 1 | ||||
| Dominant | 255 | 242 | 1.11 (0.87–1.42) | 0.404 | ||
| Recessive | 472 | 483 | 1 | |||
| 36 | 27 | 1.34 (0.80–2.25) | 0.265 | |||
| Log-additive | – | – | – | 1.12 (0.92–1.38) | 0.260 | |
| rs2980003 | Allele | 653 | 666 | 1 | ||
| 363 | 352 | 1.05 (0.88–1.26) | 0.587 | |||
| Codominant | 233 | 230 | 1.05 (0.81–1.37) | 0.722 | ||
| 65 | 61 | 1.09 (0.73–1.63) | 0.663 | |||
| 210 | 218 | 1 | ||||
| Dominant | 298 | 291 | 1.06 (0.82–1.36) | 0.657 | ||
| Recessive | 443 | 448 | 1 | |||
| 65 | 61 | 1.07 (0.73–1.55) | 0.738 | |||
| Log-additive | – | – | – | 1.05 (0.87–1.26) | 0.626 |
CI, confidence interval; OR, odds ratio; SNP: single nucleotide polymorphism; OR, Odds ratio, 95% CI; 95% confidence intervals
p‐values were calculated by unconditional logistic regression analysis with adjustment for age and gender
p < 0.05 indicates statistical significance
Association between CYP7B1 polymorphisms and CHD risk stratified by age
| SNP ID | Model | Genotype | Case | Control | OR (95% CI) | Case | Control | OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|---|---|
| > 60 years | ≤ 60 years | |||||||||
| rs7836768 | Allele | 326 | 342 | 1 | 269 | 274 | 1 | |||
| 238 | 226 | 1.11 (0.87–1.40) | 0.410 | 181 | 178 | 1.04 (0.79–1.35) | 0.796 | |||
| Codominant | 140 | 156 | 0.91 (0.89–1.32) | 0.624 | 99 | 106 | 0.92 (0.61–1.39) | 0.693 | ||
| 49 | 35 | 1.52 (0.89–2.58) | 0.123 | 41 | 36 | 1.13 (0.66–1.93) | 0.669 | |||
| 93 | 93 | 1 | 85 | 84 | 1 | |||||
| Dominant | 189 | 191 | 1.02 (0.71–1.45) | 0.920 | 140 | 142 | 0.97 (0.66–1.43) | 0.890 | ||
| Recessive | 233 | 249 | 1 | 184 | 190 | 1 | ||||
| 49 | 35 | 1.61 (1.00–2.59) | 0.052 | 41 | 36 | 1.18 (0.72–1.93) | 0.519 | |||
| Log-additive | – | – | – | 1.15 (0.90–1.48) | 0.266 | – | – | 1.03 (0.80–1.34) | 0.806 | |
| rs6472155 | Allele | 388 | 431 | 1 | 337 | 320 | 1 | |||
| 176 | 137 | 115 | 132 | 0.83 (0.62–1.11) | 0.205 | |||||
| Codominant | 124 | 111 | 1.31 (0.92–1.86) | 0.130 | 95 | 104 | 0.82 (0.56–1.19) | 0.293 | ||
| 26 | 13 | 10 | 14 | 0.64 (0.27–1.50) | 0.300 | |||||
| 132 | 160 | 1 | 121 | 108 | 1 | |||||
| Dominant | 150 | 124 | 1.40 (1.00–1.95) | 0.048 | 105 | 118 | 0.79 (0.55–1.15) | 0.222 | ||
| Recessive | 256 | 271 | 1 | 216 | 212 | 1 | ||||
| 26 | 13 | 1.94 (0.97–3.90) | 0.062 | 10 | 14 | 0.70 (0.30–1.61) | 0.403 | |||
| Log-additive | – | – | – | – | – | 0.81 (0.59–1.10) | 0.180 | |||
| rs2980003 | Allele | 350 | 369 | 1 | 303 | 297 | 1 | |||
| 214 | 197 | 1.15 (0.90–1.46) | 0.273 | 149 | 155 | 0.94 (0.72–1.24) | 0.673 | |||
| Codominant | 126 | 137 | 0.97 (0.68–1.39) | 0.856 | 107 | 93 | 1.20 (0.81–1.77) | 0.368 | ||
| 44 | 30 | 1.52 (0.89–2.61) | 0.126 | 21 | 31 | 0.70 (0.38–1.31) | 0.268 | |||
| 112 | 116 | 1 | 98 | 102 | 1 | |||||
| Dominant | 170 | 167 | 1.07 (0.76–1.50) | 0.708 | 128 | 124 | 1.08 (0.74–1.56) | 0.705 | ||
| Recessive | 238 | 253 | 1 | 205 | 195 | 1 | ||||
| 44 | 30 | 1.55 (0.94–2.57) | 0.087 | 21 | 31 | 0.64 (0.36–1.16) | 0.142 | |||
| Log-additive | – | – | – | 1.15 (0.90–1.48) | 0.261 | – | – | 0.94 (0.72–1.24) | 0.574 | |
Bold indicate that P < 0.05 means the data are statistically significant
OR, Odds ratio, 95% CI; 95% confidence intervals
p values were calculated by logistic regression adjusted by age and gender
p < 0.05 indicates statistical significance
Association between CYP7B1 polymorphisms and CHD risk stratified by gender
| SNP ID | Model | Genotype | Case | Control | OR (95% CI) | Case | Control | OR (95% CI) | ||
|---|---|---|---|---|---|---|---|---|---|---|
| Women | Men | |||||||||
| rs7836768 | Allele | 205 | 223 | 1 | 390 | 393 | 1 | |||
| 141 | 125 | 1.23 (0.90–1.67) | 0.191 | 278 | 279 | 1.00 (0.81–1.25) | 0.971 | |||
| Codominant | 89 | 95 | 1.00 (0.63–1.59) | 0.989 | 150 | 167 | / | / | ||
| 26 | 15 | 1.87 (0.90–3.89) | 0.096 | 64 | 56 | 1.08 (0.69–1.68) | 0.734 | |||
| 58 | 64 | 1 | 120 | 113 | 1 | |||||
| Dominant | 115 | 110 | 1.12 (0.72–1.75) | 0.616 | 214 | 223 | 0.90 (0.66–1.24) | 0.537 | ||
| Recessive | 147 | 159 | 1 | 270 | 280 | 1 | ||||
| 26 | 15 | 1.86 (0.94–3.67) | 0.073 | 64 | 56 | 1.19 (0.80–1.77) | 0.392 | |||
| Log-additive | – | – | – | 1.24 (0.89–1.73) | 0.201 | – | – | 1.01 (0.81–1.25) | 0.961 | |
| rs6472155 | Allele | 239 | 266 | 1 | 486 | 485 | 1 | |||
| 109 | 82 | 182 | 187 | 0.97 (0.76–1.23) | 0.812 | |||||
| Codominant | 73 | 70 | 1.21 (0.78–1.89) | 0.393 | 146 | 145 | / | / | ||
| 18 | 6 | 18 | 21 | 1.37 (0.83–2.26) | 0.652 | |||||
| 83 | 98 | 1 | 170 | 170 | 1 | |||||
| Dominant | 91 | 76 | 1.37 (0.89–2.10) | 0.148 | 164 | 166 | 0.99 (0.73–1.34) | 0.937 | ||
| Recessive | 156 | 168 | 1 | 316 | 315 | 1 | ||||
| 18 | 6 | 18 | 21 | 0.86 (0.45–1.64) | 0.637 | |||||
| Log-additive | – | – | 1.45 (1.02–2.06) | 0.037 | – | – | 0.97 (0.75–1.25) | 0.803 | ||
| rs2980003 | Allele | 225 | 215 | 1 | 428 | 451 | 1 | |||
| 123 | 133 | 0.88 (0.65–1.20) | 0.432 | 240 | 219 | 1.16 (0.92–1.45) | 0.212 | |||
| Codominant | 81 | 81 | 0.92 (0.58–1.46) | 0.732 | 152 | 149 | / | / | ||
| 21 | 26 | 0.73 (0.37–1.43) | 0.362 | 44 | 35 | 1.37 (0.83–2.26) | 0.220 | |||
| 72 | 67 | 1 | 138 | 151 | 1 | |||||
| Dominant | 102 | 107 | 0.88 (0.57–1.35) | 0.551 | 196 | 184 | 1.16 (0.86–1.58) | 0.334 | ||
| Recessive | 153 | 148 | 1 | 290 | 300 | 1 | ||||
| 21 | 26 | 0.76 (0.41–1.43) | 0.398 | 44 | 35 | 1.29 (0.81–2.08) | 0.286 | |||
| Log-additive | – | – | – | 0.87 (0.64–1.19) | 0.394 | – | – | 1.15 (0.92–1.45) | 0.220 | |
Bold indicate that P < 0.05 means the data are statistically significant
OR, Odds ratio, 95% CI; 95% confidence intervals
p values were calculated by logistic regression adjusted by age and gender
p < 0.05 indicates statistical significance
CYP7B1 polymorphisms related to CHD risk stratified by smoking and drinking status
| SNP ID | Model | Genotype | Smoking | Non-smoking | Drinking | Non-drinking | ||||
|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | |||||||
| rs7836768 | Allele | 1 | 1 | 1 | 1 | |||||
| 0.89 (0.65–1.23) | 0.485 | 1.19 (0.87–1.61) | 0.275 | 1.07 (0.68–1.71) | 0.763 | 1.25 (0.93–1.68) | 0.139 | |||
| Codominant | 0.84 (0.50–1.40) | 0.495 | 0.96 (0.60–1.54) | 0.881 | 0.65 (0.31–1.36) | 0.250 | 1.18 (0.75–1.85) | 0.465 | ||
| 0.83 (0.45–1.56) | 0.565 | 1.51 (0.76–2.99) | 0.236 | 1.31 (0.54–3.16) | 0.546 | 1.71 (0.88–3.29) | 0.111 | |||
| 1 | 1 | 1 | 1 | |||||||
| Dominant | 0.84 (0.52–1.35) | 0.461 | 1.07 (0.68–1.66) | 0.781 | 0.81 (0.41–1.60) | 0.550 | 1.29 (0.84–1.98) | 0.247 | ||
| Recessive | 1 | 1 | 1 | 1 | ||||||
| 0.92 (0.53–1.60) | 0.774 | 1.07 (0.68–1.66) | 0.781 | 1.66 (0.75–3.66) | 0.209 | 1.55 (0.85–2.84) | 0.156 | |||
| Log-additive | – | 0.90 (0.67–1.23) | 0.522 | 1.16 (0.84–1.59) | 0.370 | 1.07 (0.68–1.68) | 0.769 | 1.27 (0.94–1.73) | 0.119 | |
| rs6472155 | Allele | 1 | 1 | 1 | 1 | |||||
| 0.83 (0.59–1.18) | 0.294 | 1.27 (0.90–1.77) | 0.171 | 0.99 (0.59–1.66) | 0.961 | 1.15 (0.83–1.59) | 0.387 | |||
| Codominant | 0.92 (0.57–1.47) | 0.724 | 0.93 (0.59–1.44) | 0.735 | 1.36 (0.70–2.64) | 0.371 | 0.84 (0.56–1.29) | 0.425 | ||
| 0.55 (0.23–1.31) | 0.175 | 2.68 (0.93–7.71) | 0.068 | 0.26 (0.03–2.21) | 0.220 | |||||
| 1 | 1 | 1 | 1 | |||||||
| Dominant | 0.85 (0.54–1.33) | 0.481 | 1.05 (0.68–1.60) | 0.841 | 1.18 (0.61–2.26) | 0.625 | 0.98 (0.65–1.47) | 0.907 | ||
| Recessive | 1 | 1 | 1 | 1 | ||||||
| 0.57 (0.25–1.32) | 0.190 | 2.77 (0.98–7.83) | 0.055 | 0.23 (0.03–1.18) | 0.170 | |||||
| Log-additive | – | 0.82 (0.57–1.17) | 0.268 | 1.19 (0.83–1.69) | 0.346 | 0.95 (0.55–1.64) | 0.863 | 1.16 (0.83–1.63) | 0.376 | |
| rs2980003 | Allele | 1 | 1 | 1 | 1 | |||||
| 0.97 (0.70–1.36) | 0.879 | 1.04 (0.77–1.41) | 0.795 | 0.96 (0.72–1.30) | 0.810 | |||||
| Codominant | 1.07 (0.66–1.72) | 0.790 | 1.06 (0.67–1.69) | 0.805 | 0.98 (0.63–1.53) | 0.927 | ||||
| 0.86 (0.41–1.79) | 0.682 | 1.03 (0.54–1.96) | 0.928 | 0.44 (0.15–1.32) | 0.143 | 0.93 (0.49–1.53) | 0.833 | |||
| 1 | 1 | 1 | 1 | |||||||
| Dominant | 1.02 (0.65–1.60) | 0.933 | 1.05 (0.68–1.63) | 0.818 | 0.97 (0.64–1.48) | 0.882 | ||||
| Recessive | 1 | 1 | 1 | 1 | ||||||
| 0.83 (0.41–1.68) | 0.603 | 1.00 (0.55–1.81) | 0.995 | 0.61 (0.21–1.75) | 0.359 | 0.94 (0.52–1.71) | 0.849 | |||
| Log-additive | – | 0.97 (0.69–1.36) | 0.857 | 1.03 (0.75–1.39) | 0.875 | 0.97 (0.72–1.31) | 0.840 | |||
Bold indicate that P < 0.05 means the data are statistically significant
OR, Odds ratio, 95% CI; 95% confidence intervals
p values were calculated by logistic regression adjusted by age and gender
p < 0.05 indicates statistical significance
The analysis of SNP-SNP interaction models using MDR method
| Model | Training Bal. Acc | Testing Bal. Acc | CVC | OR (95% CI) | |
|---|---|---|---|---|---|
| rs7836768 | 0.5236 | 0.4931 | 8/10 | 1.19 (0.93–1.52) | 0.167 |
| rs7836768,rs6472155 | 0.5336 | 0.5079 | 7/10 | ||
| rs7836768,rs6472155,rs2980003 | 0.5454 | 0.4764 | 10/10 |
Bold indicate that P < 0.05 means the data are statistically significant
Bal. Acc., Balanced accuracy; CVC, Cross-validation consistently
p values were calculated by χ2 test. p < 0.05 indicates statistical significance
Fig. 1The tree diagram analysis among SNP interaction. The shorter the line connecting the 2 SNPs, the stronger the interaction. Green and blue line represent weak and no interactions
Comparisons between clinical characteristics and SNP genotypes
| SNP | Urea (mmol/l) | Creatinine (umol/l) | Uric acid (umol/l) | Total-cholesterol (mmol/l) | Apolipoprotein AI (g/l) |
|---|---|---|---|---|---|
| rs7836768SNP | |||||
| 5.167 ± 1.422 | 2.350 ± 0.841 | 302.857 ± 82.083 | 4.024 ± 0.999 | 1.185 ± 0.225 | |
| 5.210 ± 1.592 | 2.370 ± 0.867 | 297.444 ± 87.826 | 4.066 ± 1.068 | 1.170 ± 0.238 | |
| 5.178 ± 1.556 | 2.430 ± 0.785 | 304.943 ± 84.697 | 4.186 ± 1.091 | 1.149 ± 0.255 | |
| 0.958 | 0.761 | 0.718 | 0.501 | 0.518 | |
| rs6472155 | |||||
| 5.209 ± 1.543 | 2.340 ± 0.825 | 310.364 ± 86.950 | 4.039 ± 1.083 | 1.179 ± 0.236 | |
| 5.160 ± 1.493 | 2.410 ± 0.888 | 289.796 ± 84.427 | 4.125 ± 1.011 | 1.162 ± 0.230 | |
| 5.186 ± 1.615 | 2.420 ± 0.753 | 296.096 ± 68.438 | 4.055 ± 1.045 | 1.165 ± 0.279 | |
| 0.942 | 0.636 | 0.684 | 0.737 | ||
| rs2980003 | |||||
| 5.042 ± 1.387 | 2.300 ± 0.909 | 290.025 ± 86.984 | 3.885 ± 1.011 | 1.126 ± 0.223 | |
| 5.285 ± 1.599 | 2.370 ± 0.861 | 302.334 ± 81.741 | 4.075 ± 1.082 | 1.176 ± 0.224 | |
| 5.117 ± 1.474 | 2.410 ± 0.810 | 301.934 ± 88.426 | 4.142 ± 1.020 | 1.180 ± 0.254 | |
| 0.384 | 0.639 | 0.569 | 0.239 | 0.261 |
p values were calculated by Kruskal–Wallis H test
Bold indicate that P < 0.05 means the data are statistically significan