| Literature DB >> 34383889 |
Carla Cerami1,2, Zachary R Popkin-Hall1, Tyler Rapp1, Kathleen Tompkins1, Haoming Zhang3, Meredith S Muller1, Christopher Basham1, Maureen Whittelsey1, Srijana B Chhetri1, Judy Smith1, Christy Litel1, Kelly D Lin1, Mehal Churiwal1, Salman Khan4, Rebecca Rubinstein3, Faith Claman1, Katie Mollan3, David Wohl1, Lakshmanane Premkumar4, Kimberly A Powers3, Jonathan J Juliano1, Feng-Chang Lin3, Jessica T Lin1.
Abstract
BACKGROUND: Households are hot spots for severe acute respiratory syndrome coronavirus 2 transmission.Entities:
Keywords: SARS-CoV-2; household transmission; living density; secondary attack rate; viral load
Mesh:
Year: 2022 PMID: 34383889 PMCID: PMC8436395 DOI: 10.1093/cid/ciab701
Source DB: PubMed Journal: Clin Infect Dis ISSN: 1058-4838 Impact factor: 20.999
Figure 1.COVID-19 Household Transmission Study enrollment and SAR. Among 100 households that completed the 28-day follow-up, household contacts were excluded if they had evidence of prior infection (negative PCR and positive antibody test at enrollment), were possibly infected at the same time as the index case based on a common exposure event, or negative PCR testing could not be confirmed with a negative antibody test at day 28. Of the remaining 176 household contacts of 91 index cases, 41% (73) were already PCR-positive at baseline and thus excluded from the primary SAR analysis. During study follow-up, 33 incident severe acute respiratory syndrome coronavirus 2 cases were identified, yielding a SAR of 32% (33 of 103). Among the 33 secondary cases, 22 were identified by both PCR and seroconversion from day 1 to day 28, 4 were identified by PCR only, and 7 were identified based on seroconversion. Abbreviations: Ab+, antibody positive; D, day; PCR, polymerase chain reaction; SAR, secondary household attack rate.
Demographics of Study Participants
| Characteristic | Index Cases, n (%) | Household Contacts, n (%) | ||
|---|---|---|---|---|
| 91 | 176 | |||
| Male | 43 | (47) | 87 | (49) |
| Female | 48 | (53) | 89 | (51) |
| Race/Ethnicity | ||||
| White, non-Hispanic | 52 | (57) | 96 | (55) |
| Non-White | 39 | (43) | 77 | (44) |
| Black or African American | 10 | (11) | 17 | (9.7) |
| Hispanic/Latinx | 26 | (29) | 58 | (33) |
| Other, non-Hispanic | 3 | (3.3) | 2 | (1.1) |
| Unknown | 0 | (0.0) | 3 | (1.7) |
| Spanish speaking | ||||
| Yes | 13 | (14) | 28 | (16) |
| No | 78 | (86) | 148 | (84) |
| Age, years | ||||
| 0–12 | 2 | (2.2) | 38 | (22) |
| 13–17 | 6 | (6.6) | 22 | (13) |
| 18–24 | 20 | (22) | 23 | (13) |
| 25–49 | 41 | (45) | 56 | (32) |
| 50–64 | 18 | (20) | 27 | (15) |
| >65 | 4 | (4.4) | 10 | (5.7) |
| Education (excluding those aged <18 years) | ||||
| Total responses for adults aged >18 years | 80 | 113 | ||
| High school or lower | 36 | (45) | 54 | (48) |
| College degree | 23 | (29) | 34 | (30) |
| Graduate degree | 21 | (26) | 25 | (22) |
| Occupation (excluding those aged <18 years) | ||||
| Total responses for adults aged >18 years | 83 | 116 | ||
| Education | 3 | (3.6) | 6 | (5.2) |
| Healthcare worker | 11 | (13) | 9 | (7.8) |
| Retail/Hospitality/Other frontline worker | 19 | (23) | 22 | (19) |
| Student | 7 | (8.4) | 12 | (10) |
| White collar worker | 23 | (28) | 34 | (29) |
| Other (trade and arts) | 6 | (7.2) | 6 | (5.2) |
| Not working outside the home | 14 | (17) | 27 | (23) |
| Comorbidities (excluding those aged <18 years) | ||||
| Diabetes | 4 | (4.8) | 9 | (7.8) |
| High blood pressure | 12 | (15) | 24 | (21) |
| Body mass index, kg/m2 | ||||
| >30 | 28 | (34) | 38 | (33) |
| 25–29.9 | 24 | (29) | 31 | (27) |
| >30 and 1 or more comorbidity | ||||
| Adults aged >18 years (n = 83 index, 116 HC) | 16 | (19) | 22 | (19) |
| Adults aged >50 years (n = 22 index, 37 HC) | 7 | (32) | 12 | (32) |
Abbreviation: HC, household contact.
Figure 2.Severe acute respiratory syndrome coronavirus 2 viral burden is correlated within families. The viral load obtained at enrollment from nasopharyngeal (NP) swabs in households with multiple COVID-19–positive household members is shown (n = 42 households). Each vertical row in red depicts an individual household, with circles delineating the log viral load of each member within the household. Gray-shaded circles represent values derived from a nasal midturbinate swab if NP sampling was not performed. This was based on a linear regression equation generated from more than 100 study participants with positive viral load from both NP and nasal midturbinate swabs [11]. Households are depicted across the x-axis in order of decreasing viral load. Data drawn from 148 participants. The intraclass correlation coefficient = 0.45; 95% confidence interval, .23–.62; P value < .001. Abbreviation: COVID-19, coronavirus disease 2019.
Figure 3.Bayesian phylogeny showing high relatedness within household infections, indicating household transmission. High-density amplicon sequencing was performed on all available viral isolates from 10 households with secondary infections to assess relatedness between infections. Whole-genome sequences were assembled according to the Wuhan reference genome, assigned to major clades, and then used for Bayesian phylogeny reconstruction. Index cases within each numbered household are in bold. Household contacts are numbered sequentially starting with the index case number, eg, X-1, X-2. Minors are indicated with the letter “c” prior to the case number. Each asterisk indicates 1 study week preceding a positive quantitative polymerase chain reaction (PCR) test, ie, * indicating a D7 positive test, ** indicating a D14 positive test, and *** indicating a D21 positive test. Household contacts without asterisks were PCR-positive at baseline. Abbreviation: SARS-CoV-2, severe acute respiratory syndrome coronavirus 2.
Potential Risk Factors for Severe Acute Respiratory Syndrome Coronavirus 2 Transmission From Index Cases
| Index Cases | All Indexes, n (%) | Household Transmission, n (%) | No Transmission, n (%) |
|
|---|---|---|---|---|
| 60 (100) | 32 (53) | 28 (47) |
| |
| Age, years | ||||
| <18 | 7 (12) | 4 (13) | 3 (11) | NS |
| 18–50 | 45 (75) | 25 (78) | 20 (71) | |
| >50 | 8 (13) | 3 (9) | 5 (18) | |
| Sex | ||||
| Female | 33 (55) | 15 (47) | 18 (64) | NS |
| Male | 27 (45) | 17 (53) | 10 (36) | |
| Mask wearing at home prior to enrollment (missing n = 3) | 10 (18) | 4 (13) | 6 (22) | NS |
| Race-Ethnicity | ||||
| White, non-Hispanic | 34 (57) | 13 (41) | 21 (75) | .01 |
| Black or African American | 7 (12) | 5 (16) | 2 (7) | |
| Other, non-Hispanic | 4 (7) | 4 (12) | 0 (0) | |
| Hispanic/Latinx | 15 (25) | 10 (31) | 5 (18) | |
| Symptom severity | ||||
| Mild | 12 (21) | 4 (14) | 8 (29) | .07 |
| Moderate/Severe | 41 (72) | 21 (72) | 20 (71) | |
| Hospitalized | 4 (7) | 4 (14) | 0 (0) | |
| Duration of symptoms at enrollment, median (IQR), days | 5 (4–7) | 5 (4–7) | 6 (4–7) | NS |
| Nasopharyngeal viral load (log10 copies/mL) at enrollment (missing n = 6), median (IQR) | 8.3 (5.9–9.5) | 8.8 (7.3–10.1) | 7.4 (5.3–8.7) | .03 |
| Comorbidities for adults aged >18 years (missing n = 1 for diabetes, n = 3 for obesity) | ||||
| Diabetes | 0 (0) | 0 (0) | 0 (0) | NS |
| Obesity, body mass index >30 kg/m2 | 21 (42) | 13 (50) | 8 (33) | NS |
| Education for adults aged >18 years (missing n = 3) | ||||
| High school or less | 21 (42) | 13 (52) | 8 (32) | NS |
| College degree | 17 (34) | 9 (36) | 8 (32) | |
| Graduate degree | 12 (24) | 3 (12) | 9 (36) |
P values only reported if ≤ .10, otherwise noted as NS.
Abbreviations: IQR, interquartile range; NS, not significant.
aCompares White, non-Hispanic vs all other categories.
Figure 4.Association of index NP viral load and transmission in the household. Households with secondary cases were more likely to have index cases with high NP viral load compared with households without secondary transmission (median NP viral load log 8.8 vs 7.4 copies/mL, respectively; P = .03). Index cases who were not yet antibody-positive at enrollment, as a marker of more recent infection, are depicted to the right in gray. Abbreviations: Ab+, antibody positive; NP, nasopharyngeal.
Potential Household-Level Risk Factors for Severe Acute Respiratory Syndrome Coronavirus 2 Transmission
| Households | All Households, n (%) | Infected, n (%) | Uninfected, n (%) |
|
|---|---|---|---|---|
| 60 (100) | 32 (53) | 28 (47) | - | |
| Household size, mean | 3.8 | 4.2 | 3.4 | .03 |
| Living space (missing n = 3), sq ft | ||||
| <2000 | 29 (51) | 18 (60) | 11 (41) | NS |
| >2000 | 28 (49) | 12 (40) | 16 (59) | |
| Number of rooms | ||||
| 2 or fewer | 5 (8) | 2 (6) | 3 (10) | .06 |
| 3–5 | 27 (45) | 19 (59) | 8 (29) | |
| 6 or more | 28 (47) | 11 (34) | 17 (61) | |
| More than 3 people and fewer than 6 rooms | 15 (25) | 13 (41) | 2 (7) | .003 |
| Home ownership (missing n = 1) | ||||
| Renting apartment | 4 (7) | 2 (7) | 2 (7) | NS |
| Renting home | 17 (29) | 11 (36) | 6 (21) | |
| Own home | 38 (64) | 18 (58) | 20 (71) |
P values only reported if ≤ .10, otherwise noted as NS.
Abbreviation: NS, not significant.
aNumber of rooms includes bedrooms, kitchen, and common rooms but not bathrooms or garage.
Risk Factors for Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Household
| Index or Household Risk Factor | Susceptible Household Contacts | Incident Secondary Cases | Secondary Household Attack Rate (95% CI) | Odds Ratio (95% CI) | Adjusted Odds Ratio (95% CI) |
|---|---|---|---|---|---|
| Non-White | 41 | 21 | 51% (33–69) | 4.4 (1.5–13.0) | 4.8 (1.5–15.4) |
| White, non-Hispanic | 62 | 12 | 19% (10–35) | - | |
| Higher index nasopharyngeal viral load | - | - | - | 3.5 (1.5–8.1) | 3.6 (1.5–8.5) |
| High living density | 29 | 15 | 52% (27–75) | 3.3 (1.02–10.9) | 1.4 (.4–4.6) |
| Not high living density | 74 | 18 | 24% (15–37) | - |
Adjusted odds ratio adjusts for viral load as a continuous variable and race-ethnicity and living density as dichotomous variables.
Abbreviation: CI, confidence interval.
aOdds ratio for 3 log10 increase in the index viral load (VL). For example, the odds of transmission in a household where the index VL is 1 × 109 copies/mL is 3.5 times greater than in a household where the index VL is 1 × 106 copies/mL.
bDefined as more than 3 people occupying fewer than 6 rooms.