Literature DB >> 34291898

Correlated Motions in Structural Biology.

Da Xu1, Steve P Meisburger1, Nozomi Ando1.   

Abstract

Correlated motions in proteins arising from the collective movements of residues have long been proposed to be fundamentally important to key properties of proteins, from allostery and catalysis to evolvability. Recent breakthroughs in structural biology have made it possible to capture proteins undergoing complex conformational changes, yet intrinsic correlated motions within a conformation remain one of the least understood facets of protein structure. For many decades, the analysis of total X-ray scattering held the promise of animating crystal structures with correlated motions. With recent advances in both X-ray detectors and data interpretation methods, this long-held promise can now be met. In this Perspective, we will introduce how correlated motions are captured in total scattering and provide guidelines for the collection, interpretation, and validation of data. As structural biology continues to push the boundaries, we see an opportunity to gain atomistic insight into correlated motions using total scattering as a bridge between theory and experiment.

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Year:  2021        PMID: 34291898      PMCID: PMC9059239          DOI: 10.1021/acs.biochem.1c00420

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.321


  96 in total

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3.  Optimal description of a protein structure in terms of multiple groups undergoing TLS motion.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-03-18

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5.  'It will change everything': DeepMind's AI makes gigantic leap in solving protein structures.

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6.  Linking crystallographic model and data quality.

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7.  Effects of the donor-acceptor distance and dynamics on hydride tunneling in the dihydrofolate reductase catalyzed reaction.

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8.  The catalytic effect of dihydrofolate reductase and its mutants is determined by reorganization energies.

Authors:  Hanbin Liu; Arieh Warshel
Journal:  Biochemistry       Date:  2007-05-01       Impact factor: 3.162

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Authors:  Andrea Schenkmayerova; Gaspar P Pinto; Martin Toul; Martin Marek; Lenka Hernychova; Joan Planas-Iglesias; Veronika Daniel Liskova; Daniel Pluskal; Michal Vasina; Stephane Emond; Mark Dörr; Radka Chaloupkova; David Bednar; Zbynek Prokop; Florian Hollfelder; Uwe T Bornscheuer; Jiri Damborsky
Journal:  Nat Commun       Date:  2021-06-14       Impact factor: 14.919

10.  Continuous changes in structure mapped by manifold embedding of single-particle data in cryo-EM.

Authors:  Joachim Frank; Abbas Ourmazd
Journal:  Methods       Date:  2016-02-13       Impact factor: 4.647

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  1 in total

1.  Refining conformational ensembles of flexible proteins against small-angle x-ray scattering data.

Authors:  Francesco Pesce; Kresten Lindorff-Larsen
Journal:  Biophys J       Date:  2021-10-08       Impact factor: 4.033

  1 in total

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