Literature DB >> 33257889

'It will change everything': DeepMind's AI makes gigantic leap in solving protein structures.

Ewen Callaway.   

Abstract

Keywords:  Computational biology and bioinformatics; Drug discovery; Structural biology

Year:  2020        PMID： 33257889     DOI： 10.1038/d41586-020-03348-4

Source DB:  PubMed          Journal:  Nature        ISSN： 0028-0836            Impact factor:   49.962


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  78 in total

1.  CryoEM and AI reveal a structure of SARS-CoV-2 Nsp2, a multifunctional protein involved in key host processes.

Authors:  Meghna Gupta; Caleigh M Azumaya; Michelle Moritz; Sergei Pourmal; Amy Diallo; Gregory E Merz; Gwendolyn Jang; Mehdi Bouhaddou; Andrea Fossati; Axel F Brilot; Devan Diwanji; Evelyn Hernandez; Nadia Herrera; Huong T Kratochvil; Victor L Lam; Fei Li; Yang Li; Henry C Nguyen; Carlos Nowotny; Tristan W Owens; Jessica K Peters; Alexandrea N Rizo; Ursula Schulze-Gahmen; Amber M Smith; Iris D Young; Zanlin Yu; Daniel Asarnow; Christian Billesbølle; Melody G Campbell; Jen Chen; Kuei-Ho Chen; Un Seng Chio; Miles Sasha Dickinson; Loan Doan; Mingliang Jin; Kate Kim; Junrui Li; Yen-Li Li; Edmond Linossi; Yanxin Liu; Megan Lo; Jocelyne Lopez; Kyle E Lopez; Adamo Mancino; Frank R Moss; Michael D Paul; Komal Ishwar Pawar; Adrian Pelin; Thomas H Pospiech; Cristina Puchades; Soumya Govinda Remesh; Maliheh Safari; Kaitlin Schaefer; Ming Sun; Mariano C Tabios; Aye C Thwin; Erron W Titus; Raphael Trenker; Eric Tse; Tsz Kin Martin Tsui; Feng Wang; Kaihua Zhang; Yang Zhang; Jianhua Zhao; Fengbo Zhou; Yuan Zhou; Lorena Zuliani-Alvarez; David A Agard; Yifan Cheng; James S Fraser; Natalia Jura; Tanja Kortemme; Aashish Manglik; Daniel R Southworth; Robert M Stroud; Danielle L Swaney; Nevan J Krogan; Adam Frost; Oren S Rosenberg; Kliment A Verba
Journal:  bioRxiv       Date:  2021-05-11

2.  Structure-function analysis of cysteine residues in the plasmodium falciparum chitinase, PfCHT1.

Authors:  Hargobinder Kaur; Laine Garber; James W Murphy; Joseph M Vinetz
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.725

Review 3.  A Minireview on Temperature Dependent Protein Conformational Sampling.

Authors:  Ming Dong
Journal:  Protein J       Date:  2021-06-28       Impact factor: 2.371

Review 4.  FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.

Authors:  Eitan Lerner; Anders Barth; Jelle Hendrix; Benjamin Ambrose; Victoria Birkedal; Scott C Blanchard; Richard Börner; Hoi Sung Chung; Thorben Cordes; Timothy D Craggs; Ashok A Deniz; Jiajie Diao; Jingyi Fei; Ruben L Gonzalez; Irina V Gopich; Taekjip Ha; Christian A Hanke; Gilad Haran; Nikos S Hatzakis; Sungchul Hohng; Seok-Cheol Hong; Thorsten Hugel; Antonino Ingargiola; Chirlmin Joo; Achillefs N Kapanidis; Harold D Kim; Ted Laurence; Nam Ki Lee; Tae-Hee Lee; Edward A Lemke; Emmanuel Margeat; Jens Michaelis; Xavier Michalet; Sua Myong; Daniel Nettels; Thomas-Otavio Peulen; Evelyn Ploetz; Yair Razvag; Nicole C Robb; Benjamin Schuler; Hamid Soleimaninejad; Chun Tang; Reza Vafabakhsh; Don C Lamb; Claus Am Seidel; Shimon Weiss
Journal:  Elife       Date:  2021-03-29       Impact factor: 8.140

5.  A lysine-cysteine redox switch with an NOS bridge regulates enzyme function.

Authors:  Marie Wensien; Fabian Rabe von Pappenheim; Lisa-Marie Funk; Patrick Kloskowski; Ute Curth; Ulf Diederichsen; Jon Uranga; Jin Ye; Pan Fang; Kuan-Ting Pan; Henning Urlaub; Ricardo A Mata; Viktor Sautner; Kai Tittmann
Journal:  Nature       Date:  2021-05-05       Impact factor: 49.962

Review 6.  Artificial intelligence and machine learning for medical imaging: A technology review.

Authors:  Ana Barragán-Montero; Umair Javaid; Gilmer Valdés; Dan Nguyen; Paul Desbordes; Benoit Macq; Siri Willems; Liesbeth Vandewinckele; Mats Holmström; Fredrik Löfman; Steven Michiels; Kevin Souris; Edmond Sterpin; John A Lee
Journal:  Phys Med       Date:  2021-05-09       Impact factor: 2.685

Review 7.  Beyond history and "on a roll": The list of the most well-studied human protein structures and overall trends in the protein data bank.

Authors:  Zhen-Lu Li; Matthias Buck
Journal:  Protein Sci       Date:  2021-03-04       Impact factor: 6.725

Review 8.  Artificial intelligence in drug discovery: what is realistic, what are illusions? Part 2: a discussion of chemical and biological data.

Authors:  Andreas Bender; Isidro Cortes-Ciriano
Journal:  Drug Discov Today       Date:  2021-01-27       Impact factor: 7.851

Review 9.  Recent Applications of Deep Learning Methods on Evolution- and Contact-Based Protein Structure Prediction.

Authors:  Donghyuk Suh; Jai Woo Lee; Sun Choi; Yoonji Lee
Journal:  Int J Mol Sci       Date:  2021-06-02       Impact factor: 5.923

Review 10.  Prospects of Neutralizing Nanobodies Against SARS-CoV-2.

Authors:  Fangfang Chen; Zhihong Liu; Fan Jiang
Journal:  Front Immunol       Date:  2021-05-28       Impact factor: 7.561
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