Literature DB >> 34288588

Photocrosslinking O-GlcNAcylated Proteins to Neighboring Biomolecules.

Emanuela Capota1, Han Wu1, Jennifer J Kohler1.   

Abstract

This protocol enables identification of the interaction partners of O-GlcNAcylated proteins. The method involves the introduction of the diazirine photocrosslinker onto the O-GlcNAc modification within living cells. The photocrosslinker is activated by UV light to yield covalent crosslinking between O-GlcNAcylated proteins and neighboring molecules. The binding partners can be further characterized by immunoblot or proteomics mass spectrometry methods. The benefits of using the photocrosslinker include the capacity to trap low-affinity binding interactions and the ability to selectively target the interaction partners of the O-GlcNAcylated form of the protein of interest.
© 2021 Wiley Periodicals LLC. Basic Protocol 1: In-cell production and crosslinking of O-GlcNDAzylated proteins Basic Protocol 2: Immunoblot analysis to assess O-GlcNDAz crosslinking Support Protocol: Detection of UDP-GlcNDAz from cell lysates. © 2021 Wiley Periodicals LLC.

Entities:  

Keywords:  O-GlcNAc; diazirine; glycosylation; metabolic labeling; photocrosslinking

Mesh:

Substances:

Year:  2021        PMID: 34288588      PMCID: PMC8299865          DOI: 10.1002/cpz1.201

Source DB:  PubMed          Journal:  Curr Protoc        ISSN: 2691-1299


  27 in total

1.  Photo-activated affinity-site cross-linking of antibodies using tryptophan containing peptides.

Authors:  Mike Russ; Dingyuan Lou; Heinz Kohler
Journal:  J Immunol Methods       Date:  2005-09       Impact factor: 2.303

Review 2.  Getting a grip on glycans: A current overview of the metabolic oligosaccharide engineering toolbox.

Authors:  Tjerk J Sminia; Han Zuilhof; Tom Wennekes
Journal:  Carbohydr Res       Date:  2016-09-16       Impact factor: 2.104

Review 3.  Critical observations that shaped our understanding of the function(s) of intracellular glycosylation (O-GlcNAc).

Authors:  Natasha E Zachara
Journal:  FEBS Lett       Date:  2018-11-24       Impact factor: 4.124

Review 4.  Photo-crosslinking: An Emerging Chemical Tool for Investigating Molecular Networks in Live Cells.

Authors:  Pratyush Kumar Mishra; Chang-Mo Yoo; Eunmi Hong; Hyun Woo Rhee
Journal:  Chembiochem       Date:  2020-01-20       Impact factor: 3.164

5.  Structural basis of O-GlcNAc recognition by mammalian 14-3-3 proteins.

Authors:  Clifford A Toleman; Maria A Schumacher; Seok-Ho Yu; Wenjie Zeng; Nathan J Cox; Timothy J Smith; Erik J Soderblom; Amberlyn M Wands; Jennifer J Kohler; Michael Boyce
Journal:  Proc Natl Acad Sci U S A       Date:  2018-05-21       Impact factor: 11.205

Review 6.  Diazirine based photoaffinity labeling.

Authors:  Luba Dubinsky; Bastiaan P Krom; Michael M Meijler
Journal:  Bioorg Med Chem       Date:  2011-06-29       Impact factor: 3.641

7.  Metabolic Labeling for the Visualization and Identification of Potentially O-GlcNAc-Modified Proteins.

Authors:  Nichole J Pedowitz; Balyn W Zaro; Matthew R Pratt
Journal:  Curr Protoc Chem Biol       Date:  2020-06

Review 8.  O-GlcNAc cycling: a link between metabolism and chronic disease.

Authors:  Michelle R Bond; John A Hanover
Journal:  Annu Rev Nutr       Date:  2013-04-29       Impact factor: 11.848

Review 9.  A little sugar goes a long way: the cell biology of O-GlcNAc.

Authors:  Michelle R Bond; John A Hanover
Journal:  J Cell Biol       Date:  2015-03-30       Impact factor: 10.539

Review 10.  Photo-affinity labeling (PAL) in chemical proteomics: a handy tool to investigate protein-protein interactions (PPIs).

Authors:  Dhiraj P Murale; Seong Cheol Hong; Md Mamunul Haque; Jun-Seok Lee
Journal:  Proteome Sci       Date:  2017-06-24       Impact factor: 2.480

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  1 in total

1.  Synthesis of Cell-Permeable N-Acetylhexosamine 1-Phosphates.

Authors:  Badrinath N Kakde; Emanuela Capota; Jennifer J Kohler; Uttam K Tambar
Journal:  J Org Chem       Date:  2021-10-07       Impact factor: 4.198

  1 in total

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