Literature DB >> 31794116

Photo-crosslinking: An Emerging Chemical Tool for Investigating Molecular Networks in Live Cells.

Pratyush Kumar Mishra1,2, Chang-Mo Yoo1, Eunmi Hong3, Hyun Woo Rhee1.   

Abstract

Studying protein-protein interactions (PPIs) is useful for understanding cellular functions and mechanisms. Evaluating these PPIs under conditions as similar as possible to native conditions can be achieved using photo-crosslinking methods because of their on-demand ability to generate reactive species in situ by irradiation with UV light. Various fusion tag, metabolic incorporation, and amber codon suppression approaches using various crosslinkers containing aryl azide, benzophenone, and diazirines have been applied in live cells. Mass spectrometry and immunological techniques are used to identify crosslinked proteins based on their capture transient and context-dependent interactions. Herein we discuss various incorporation methods and crosslinkers that have been used for interactome mapping in live cells.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  enzymatic labeling; photo-crosslinking; protein-protein interactions; proximity labeling; unnatural amino acids

Mesh:

Substances:

Year:  2020        PMID: 31794116     DOI: 10.1002/cbic.201900600

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  13 in total

1.  A Photo-Crosslinking Approach to Identify Class II SUMO-1 Binders.

Authors:  Kira Brüninghoff; Stephanie Wulff; Wolfgang Dörner; Ruth Geiss-Friedlander; Henning D Mootz
Journal:  Front Chem       Date:  2022-05-30       Impact factor: 5.545

2.  Chemical Diversification of Simple Synthetic Antibodies.

Authors:  Mariha Islam; Haixing P Kehoe; Jacob B Lissoos; Manjie Huang; Christopher E Ghadban; Greg Berumen Sánchez; Hanan Z Lane; James A Van Deventer
Journal:  ACS Chem Biol       Date:  2021-01-22       Impact factor: 5.100

3.  Probing the Mechanism of Photoaffinity Labeling by Dialkyldiazirines through Bioorthogonal Capture of Diazoalkanes.

Authors:  Jessica G K O'Brien; Andrew Jemas; Papa Nii Asare-Okai; Christopher W Am Ende; Joseph M Fox
Journal:  Org Lett       Date:  2020-12-01       Impact factor: 6.005

4.  A chemical tool for blue light-inducible proximity photo-crosslinking in live cells.

Authors:  Pratyush Kumar Mishra; Myeong-Gyun Kang; Hakbong Lee; Seungjoon Kim; Subin Choi; Nirmali Sharma; Cheol-Min Park; Jaewon Ko; Changwook Lee; Jeong Kon Seo; Hyun-Woo Rhee
Journal:  Chem Sci       Date:  2021-12-10       Impact factor: 9.825

5.  Engineering Pyrrolysyl-tRNA Synthetase for the Incorporation of Non-Canonical Amino Acids with Smaller Side Chains.

Authors:  Nikolaj G Koch; Peter Goettig; Juri Rappsilber; Nediljko Budisa
Journal:  Int J Mol Sci       Date:  2021-10-17       Impact factor: 5.923

6.  A photo-cross-linking GlcNAc analog enables covalent capture of N-linked glycoprotein-binding partners on the cell surface.

Authors:  Han Wu; Asif Shajahan; Jeong-Yeh Yang; Emanuela Capota; Amberlyn M Wands; Connie M Arthur; Sean R Stowell; Kelley W Moremen; Parastoo Azadi; Jennifer J Kohler
Journal:  Cell Chem Biol       Date:  2021-07-30       Impact factor: 9.039

7.  Photocrosslinking O-GlcNAcylated Proteins to Neighboring Biomolecules.

Authors:  Emanuela Capota; Han Wu; Jennifer J Kohler
Journal:  Curr Protoc       Date:  2021-07

Review 8.  Bifunctional Non-Canonical Amino Acids: Combining Photo-Crosslinking with Click Chemistry.

Authors:  Jan-Erik Hoffmann
Journal:  Biomolecules       Date:  2020-04-10

Review 9.  Interfaces with Structure Dynamics of the Workhorses from Cells Revealed through Cross-Linking Mass Spectrometry (CLMS).

Authors:  Umesh Kalathiya; Monikaben Padariya; Jakub Faktor; Etienne Coyaud; Javier A Alfaro; Robin Fahraeus; Ted R Hupp; David R Goodlett
Journal:  Biomolecules       Date:  2021-03-04

10.  Direct measurement of protein-protein interactions by FLIM-FRET at UV laser-induced DNA damage sites in living cells.

Authors:  Tanja Kaufmann; Sébastien Herbert; Benjamin Hackl; Johanna Maria Besold; Christopher Schramek; Josef Gotzmann; Kareem Elsayad; Dea Slade
Journal:  Nucleic Acids Res       Date:  2020-12-02       Impact factor: 16.971

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