Literature DB >> 34285228

Engineering self-organized criticality in living cells.

Blai Vidiella1,2, Antoni Guillamon3,4,5, Josep Sardanyés5, Victor Maull1,2, Jordi Pla1,2, Nuria Conde6,7, Ricard Solé8,9,10.   

Abstract

Complex dynamical fluctuations, from intracellular noise, brain dynamics or computer traffic display bursting dynamics consistent with a critical state between order and disorder. Living close to the critical point has adaptive advantages and it has been conjectured that evolution could select these critical states. Is this the case of living cells? A system can poise itself close to the critical point by means of the so-called self-organized criticality (SOC). In this paper we present an engineered gene network displaying SOC behaviour. This is achieved by exploiting the saturation of the proteolytic degradation machinery in E. coli cells by means of a negative feedback loop that reduces congestion. Our critical motif is built from a two-gene circuit, where SOC can be successfully implemented. The potential implications for both cellular dynamics and behaviour are discussed.
© 2021. The Author(s).

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Year:  2021        PMID: 34285228      PMCID: PMC8292319          DOI: 10.1038/s41467-021-24695-4

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  24 in total

1.  Criticality and scaling in evolutionary ecology.

Authors: 
Journal:  Trends Ecol Evol       Date:  1999-04       Impact factor: 17.712

Review 2.  Control, exploitation and tolerance of intracellular noise.

Authors:  Christopher V Rao; Denise M Wolf; Adam P Arkin
Journal:  Nature       Date:  2002-11-14       Impact factor: 49.962

3.  Self-organized criticality and synchronization in a lattice model of integrate-and-fire oscillators.

Authors: 
Journal:  Phys Rev Lett       Date:  1995-01-02       Impact factor: 9.161

4.  Why a simple model of genetic regulatory networks describes the distribution of avalanches in gene expression data.

Authors:  R Serra; M Villani; A Graudenzi; S A Kauffman
Journal:  J Theor Biol       Date:  2007-01-24       Impact factor: 2.691

5.  Criticality Distinguishes the Ensemble of Biological Regulatory Networks.

Authors:  Bryan C Daniels; Hyunju Kim; Douglas Moore; Siyu Zhou; Harrison B Smith; Bradley Karas; Stuart A Kauffman; Sara I Walker
Journal:  Phys Rev Lett       Date:  2018-09-28       Impact factor: 9.161

Review 6.  Cellular decision making and biological noise: from microbes to mammals.

Authors:  Gábor Balázsi; Alexander van Oudenaarden; James J Collins
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

Review 7.  Functional roles for noise in genetic circuits.

Authors:  Avigdor Eldar; Michael B Elowitz
Journal:  Nature       Date:  2010-09-09       Impact factor: 49.962

Review 8.  Nature, nurture, or chance: stochastic gene expression and its consequences.

Authors:  Arjun Raj; Alexander van Oudenaarden
Journal:  Cell       Date:  2008-10-17       Impact factor: 41.582

9.  Queueing up for enzymatic processing: correlated signaling through coupled degradation.

Authors:  Natalie A Cookson; William H Mather; Tal Danino; Octavio Mondragón-Palomino; Ruth J Williams; Lev S Tsimring; Jeff Hasty
Journal:  Mol Syst Biol       Date:  2011-12-20       Impact factor: 11.429

10.  Critical dynamics in genetic regulatory networks: examples from four kingdoms.

Authors:  Enrique Balleza; Elena R Alvarez-Buylla; Alvaro Chaos; Stuart Kauffman; Ilya Shmulevich; Maximino Aldana
Journal:  PLoS One       Date:  2008-06-18       Impact factor: 3.240

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  2 in total

1.  Ecological firewalls for synthetic biology.

Authors:  Blai Vidiella; Ricard Solé
Journal:  iScience       Date:  2022-06-23

Review 2.  Bacterial degrons in synthetic circuits.

Authors:  Prajakta Jadhav; Yanyan Chen; Nicholas Butzin; Javier Buceta; Arantxa Urchueguía
Journal:  Open Biol       Date:  2022-08-17       Impact factor: 7.124

  2 in total

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