Literature DB >> 34267414

Anatomical Labeling of Human Airway Branches using a Novel Two-Step Machine Learning and Hierarchical Features.

Syed Ahmed Nadeem1, Eric A Hoffman2, Alejandro P Comellas3, Punam K Saha1,2.   

Abstract

Chronic obstructive pulmonary disease (COPD) is a common inflammatory disease associated with restricted lung airflow. Quantitative computed tomography (CT)-based bronchial measures are popularly used in COPD-related studies, which require both airway segmentation and anatomical branch labeling. This paper presents an algorithm for anatomical labeling of human airway tree branches using a novel two-step machine learning and hierarchical features. Anatomical labeling of airway branches allows standardized spatial referencing of airway phenotypes in large population-based studies. State-of-the-art anatomical labeling methods are associated with mandatory manual reviewing and correction for mislabeled branches-a time-consuming process susceptible to inter-observer variability. The new method is fully automated, and it uses hierarchical branch-level features from the current as well as ancestral and descendant branches. During the first machine learning step, it differentiates candidate anatomical branches from insignificant topological branches, often, responsible for variations in airway branching patterns. The second step is designed for lung lobe-based classification of anatomical labels for valid candidate branches. The machine learning classifiers has been designed, trained, and validated using total lung capacity (TLC) CT scans (n = 350) from the Iowa cohort of the nationwide COPDGene study during their baseline visits. One hundred TLC CT scans were used for training and validation, and a different set of 250 scans were used for testing and evaluative experiments. The new method achieved labeling accuracies of 98.4, 97.2, 92.3, 93.4, and 94.1% in the right upper, right middle, right lower, left upper, and left lower lobe, respectively, and an overall accuracy of 95.9%. For five clinically significant segmental branches, the method has achieved an accuracy of 95.2%.

Entities:  

Keywords:  Airway tree; airway branch labeling; centerline analysis; computed tomography; neural network

Year:  2020        PMID: 34267414      PMCID: PMC8279009          DOI: 10.1117/12.2546004

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  15 in total

1.  Design of the Subpopulations and Intermediate Outcomes in COPD Study (SPIROMICS).

Authors:  David Couper; Lisa M LaVange; MeiLan Han; R Graham Barr; Eugene Bleecker; Eric A Hoffman; Richard Kanner; Eric Kleerup; Fernando J Martinez; Prescott G Woodruff; Stephen Rennard
Journal:  Thorax       Date:  2013-09-12       Impact factor: 9.139

2.  Matching and anatomical labeling of human airway tree.

Authors:  Juerg Tschirren; Geoffrey McLennan; Kálmán Palágyi; Eric A Hoffman; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2005-12       Impact factor: 10.048

3.  Robust segmentation and anatomical labeling of the airway tree from thoracic CT scans.

Authors:  Bram van Ginneken; Wouter Baggerman; Eva M van Rikxoort
Journal:  Med Image Comput Comput Assist Interv       Date:  2008

4.  Characteristics of COPD in never-smokers and ever-smokers in the general population: results from the CanCOLD study.

Authors:  W C Tan; D D Sin; J Bourbeau; P Hernandez; K R Chapman; R Cowie; J M FitzGerald; D D Marciniuk; F Maltais; A S Buist; J Road; J C Hogg; M Kirby; H Coxson; C Hague; J Leipsic; D E O'Donnell; S D Aaron
Journal:  Thorax       Date:  2015-06-05       Impact factor: 9.139

5.  Genetic epidemiology of COPD (COPDGene) study design.

Authors:  Elizabeth A Regan; John E Hokanson; James R Murphy; Barry Make; David A Lynch; Terri H Beaty; Douglas Curran-Everett; Edwin K Silverman; James D Crapo
Journal:  COPD       Date:  2010-02       Impact factor: 2.409

6.  Naming the bronchopulmonary segments and the development of pulmonary surgery.

Authors:  W C Sealy; S R Connally; M L Dalton
Journal:  Ann Thorac Surg       Date:  1993-01       Impact factor: 4.330

7.  A Robust and Efficient Curve Skeletonization Algorithm for Tree-Like Objects Using Minimum Cost Paths.

Authors:  Dakai Jin; Krishna S Iyer; Cheng Chen; Eric A Hoffman; Punam K Saha
Journal:  Pattern Recognit Lett       Date:  2015-04-15       Impact factor: 3.756

8.  Geodesic Atlas-Based Labeling of Anatomical Trees: Application and Evaluation on Airways Extracted From CT.

Authors:  Aasa Feragen; Jens Petersen; Megan Owen; Laura Hohwu Thomsen; Mathilde Marie Winkler Wille; Asger Dirksen; Marleen de Bruijne
Journal:  IEEE Trans Med Imaging       Date:  2014-12-18       Impact factor: 10.048

9.  A hierarchical scheme for geodesic anatomical labeling of airway trees.

Authors:  Aasa Feragen; Jens Petersen; Megan Owen; Pechin Lo; Laura H Thomsen; Mathilde M W Wille; Asger Dirksen; Marleen de Bruijne
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

10.  The unmet global burden of COPD.

Authors:  S A Quaderi; J R Hurst
Journal:  Glob Health Epidemiol Genom       Date:  2018-04-06
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