Literature DB >> 34197806

Fuzzy binding model of molecular interactions between tropoelastin and integrin alphaVbeta3.

Jazmin Ozsvar1, Richard Wang1, Anna Tarakanova2, Markus J Buehler3, Anthony S Weiss4.   

Abstract

Tropoelastin is the highly flexible monomer subunit of elastin, required for the resilience of the extracellular matrix in elastic tissues. To elicit biological signaling, multiple sites on tropoelastin bind to cell surface integrins in a poorly understood multifactorial process. We constructed a full atomistic molecular model of the interactions between tropoelastin and integrin αvβ3 using ensemble-based computational methodologies. Conformational changes of integrin αvβ3 associated with outside-in signaling were more frequently facilitated in an ensemble in which tropoelastin bound the integrin's α1 helix rather than the upstream canonical binding site. Our findings support a model of fuzzy binding, whereby many tropoelastin conformations and defined sites cooperatively interact with multiple αvβ3 regions. This model explains prior experimental binding to distinct tropoelastin regions, domains 17 and 36, and points to the cooperative participation of domain 20. Our study highlights the utility of ensemble-based approaches in helping to understand the interactive mechanisms of functionally significant flexible proteins.
Copyright © 2021 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2021        PMID: 34197806      PMCID: PMC8390957          DOI: 10.1016/j.bpj.2021.04.037

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   3.699


  66 in total

1.  Clustering biomolecular complexes by residue contacts similarity.

Authors:  João P G L M Rodrigues; Mikaël Trellet; Christophe Schmitz; Panagiotis Kastritis; Ezgi Karaca; Adrien S J Melquiond; Alexandre M J J Bonvin
Journal:  Proteins       Date:  2012-05-08

Review 2.  Fuzzy complexes: Specific binding without complete folding.

Authors:  Rashmi Sharma; Zsolt Raduly; Marton Miskei; Monika Fuxreiter
Journal:  FEBS Lett       Date:  2015-07-27       Impact factor: 4.124

3.  Structure of integrin alpha5beta1 in complex with fibronectin.

Authors:  Junichi Takagi; Konstantin Strokovich; Timothy A Springer; Thomas Walz
Journal:  EMBO J       Date:  2003-09-15       Impact factor: 11.598

4.  Molecular model of human tropoelastin and implications of associated mutations.

Authors:  Anna Tarakanova; Giselle C Yeo; Clair Baldock; Anthony S Weiss; Markus J Buehler
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

5.  Direct observation of structure and dynamics during phase separation of an elastomeric protein.

Authors:  Sean E Reichheld; Lisa D Muiznieks; Fred W Keeley; Simon Sharpe
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-15       Impact factor: 11.205

6.  Conformational transitions of the cross-linking domains of elastin during self-assembly.

Authors:  Sean E Reichheld; Lisa D Muiznieks; Richard Stahl; Karen Simonetti; Simon Sharpe; Fred W Keeley
Journal:  J Biol Chem       Date:  2014-02-18       Impact factor: 5.157

7.  Elastin is heterogeneously cross-linked.

Authors:  Christoph U Schräder; Andrea Heinz; Petra Majovsky; Berin Karaman Mayack; Jürgen Brinckmann; Wolfgang Sippl; Christian E H Schmelzer
Journal:  J Biol Chem       Date:  2018-08-14       Impact factor: 5.157

8.  How the headpiece hinge angle is opened: New insights into the dynamics of integrin activation.

Authors:  Eileen Puklin-Faucher; Mu Gao; Klaus Schulten; Viola Vogel
Journal:  J Cell Biol       Date:  2006-10-23       Impact factor: 10.539

9.  Structural Study of Cell Attachment Peptide Derived from Laminin by Molecular Dynamics Simulation.

Authors:  Hironao Yamada; Sakiko Mori; Takeshi Miyakawa; Ryota Morikawa; Fumihiko Katagiri; Kentaro Hozumi; Yamato Kikkawa; Motoyoshi Nomizu; Masako Takasu
Journal:  PLoS One       Date:  2016-02-18       Impact factor: 3.240

10.  Interface residues of transient protein-protein complexes have extensive intra-protein interactions apart from inter-protein interactions.

Authors:  Srinivasan Jayashree; Pavalam Murugavel; Ramanathan Sowdhamini; Narayanaswamy Srinivasan
Journal:  Biol Direct       Date:  2019-01-15       Impact factor: 4.540

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  3 in total

Review 1.  Elastic Fibre Proteins in Elastogenesis and Wound Healing.

Authors:  Xinyang Zhang; Yasmene F Alanazi; Thomas A Jowitt; Alan M Roseman; Clair Baldock
Journal:  Int J Mol Sci       Date:  2022-04-07       Impact factor: 6.208

Review 2.  Is There a Need for a More Precise Description of Biomolecule Interactions to Understand Cell Function?

Authors:  Pierre Bongrand
Journal:  Curr Issues Mol Biol       Date:  2022-01-21       Impact factor: 2.976

Review 3.  SARS-CoV-2 Infection-Of Music and Mechanics of Its Spikes! A Perspective.

Authors:  Manoj K Kolel-Veetil; Aayush Kant; Vivek B Shenoy; Markus J Buehler
Journal:  ACS Nano       Date:  2022-05-05       Impact factor: 18.027

  3 in total

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