Literature DB >> 34174396

Adaptation of an NLP system to a new healthcare environment to identify social determinants of health.

Ruth M Reeves1, Lee Christensen2, Jeremiah R Brown3, Michael Conway2, Maxwell Levis3, Glenn T Gobbel4, Rashmee U Shah5, Christine Goodrich3, Iben Ricket3, Freneka Minter6, Andrew Bohm3, Bruce E Bray7, Michael E Matheny8, Wendy Chapman9.   

Abstract

Social determinants of health (SDoH) are increasingly important factors for population health, healthcare outcomes, and care delivery. However, many of these factors are not reliably captured within structured electronic health record (EHR) data. In this work, we evaluated and adapted a previously published NLP tool to include additional social risk factors for deployment at Vanderbilt University Medical Center in an Acute Myocardial Infarction cohort. We developed a transformation of the SDoH outputs of the tool into the OMOP common data model (CDM) for re-use across many potential use cases, yielding performance measures across 8 SDoH classes of precision 0.83 recall 0.74 and F-measure of 0.78. Published by Elsevier Inc.

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Year:  2021        PMID: 34174396      PMCID: PMC8386129          DOI: 10.1016/j.jbi.2021.103851

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   8.000


  29 in total

Review 1.  Interface terminologies: facilitating direct entry of clinical data into electronic health record systems.

Authors:  S Trent Rosenbloom; Randolph A Miller; Kevin B Johnson; Peter L Elkin; Steven H Brown
Journal:  J Am Med Inform Assoc       Date:  2006-02-24       Impact factor: 4.497

2.  Looking Beyond the Hospital to Reduce Acute Myocardial Infarction: Progress and Potential.

Authors:  Karen E Joynt; Thomas M Maddox
Journal:  JAMA Cardiol       Date:  2016-06-01       Impact factor: 14.676

3.  Automated Extraction of Substance Use Information from Clinical Texts.

Authors:  Yan Wang; Elizabeth S Chen; Serguei Pakhomov; Elliot Arsoniadis; Elizabeth W Carter; Elizabeth Lindemann; Indra Neil Sarkar; Genevieve B Melton
Journal:  AMIA Annu Symp Proc       Date:  2015-11-05

4.  A Novel Model for Predicting Rehospitalization Risk Incorporating Physical Function, Cognitive Status, and Psychosocial Support Using Natural Language Processing.

Authors:  Jeffrey L Greenwald; Patrick R Cronin; Victoria Carballo; Goodarz Danaei; Garry Choy
Journal:  Med Care       Date:  2017-03       Impact factor: 2.983

5.  Longitudinal Associations Between Income Changes and Incident Cardiovascular Disease: The Atherosclerosis Risk in Communities Study.

Authors:  Stephen Y Wang; Andy S L Tan; Brian Claggett; Alvin Chandra; Sameed Ahmed M Khatana; Pamela L Lutsey; Anna Kucharska-Newton; Silvia Koton; Scott D Solomon; Ichiro Kawachi
Journal:  JAMA Cardiol       Date:  2019-12-01       Impact factor: 14.676

6.  The Impact of Social Determinants of Health on Hospitalization in the Veterans Health Administration.

Authors:  Elham Hatef; Kelly M Searle; Zachary Predmore; Elyse C Lasser; Hadi Kharrazi; Karin Nelson; Philip Sylling; Idamay Curtis; Stephan D Fihn; Jonathan P Weiner
Journal:  Am J Prev Med       Date:  2019-04-17       Impact factor: 5.043

7.  Using natural language processing on the free text of clinical documents to screen for evidence of homelessness among US veterans.

Authors:  Adi V Gundlapalli; Marjorie E Carter; Miland Palmer; Thomas Ginter; Andrew Redd; Steven Pickard; Shuying Shen; Brett South; Guy Divita; Scott Duvall; Thien M Nguyen; Leonard W D'Avolio; Matthew Samore
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

8.  Social Determinants of Risk and Outcomes for Cardiovascular Disease: A Scientific Statement From the American Heart Association.

Authors:  Edward P Havranek; Mahasin S Mujahid; Donald A Barr; Irene V Blair; Meryl S Cohen; Salvador Cruz-Flores; George Davey-Smith; Cheryl R Dennison-Himmelfarb; Michael S Lauer; Debra W Lockwood; Milagros Rosal; Clyde W Yancy
Journal:  Circulation       Date:  2015-08-03       Impact factor: 29.690

9.  Social and Behavioral Variables in the Electronic Health Record: A Path Forward to Increase Data Quality and Utility.

Authors:  Elyse C Lasser; Julia M Kim; Elham Hatef; Hadi Kharrazi; Jill A Marsteller; Lisa Ross DeCamp
Journal:  Acad Med       Date:  2021-07-01       Impact factor: 7.840

10.  Development of Electronic Health Record-Based Prediction Models for 30-Day Readmission Risk Among Patients Hospitalized for Acute Myocardial Infarction.

Authors:  Michael E Matheny; Iben Ricket; Christine A Goodrich; Rashmee U Shah; Meagan E Stabler; Amy M Perkins; Chad Dorn; Jason Denton; Bruce E Bray; Ram Gouripeddi; John Higgins; Wendy W Chapman; Todd A MacKenzie; Jeremiah R Brown
Journal:  JAMA Netw Open       Date:  2021-01-04
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  4 in total

Review 1.  The Assessment of Social Determinants of Health in Postsepsis Mortality and Readmission: A Scoping Review.

Authors:  Ryan S Hilton; Katrina Hauschildt; Milan Shah; Marc Kowalkowski; Stephanie Taylor
Journal:  Crit Care Explor       Date:  2022-07-29

Review 2.  Social Determinants of Health in Physiatry: Challenges and Opportunities for Clinical Decision Making and Improving Treatment Precision.

Authors:  Rosalynn R Z Conic; Carolyn Geis; Heather K Vincent
Journal:  Front Public Health       Date:  2021-11-11

3.  Tasks as needs: reframing the paradigm of clinical natural language processing research for real-world decision support.

Authors:  Asher Lederman; Reeva Lederman; Karin Verspoor
Journal:  J Am Med Inform Assoc       Date:  2022-09-12       Impact factor: 7.942

4.  Information Extraction From Electronic Health Records to Predict Readmission Following Acute Myocardial Infarction: Does Natural Language Processing Using Clinical Notes Improve Prediction of Readmission?

Authors:  Jeremiah R Brown; Iben M Ricket; Ruth M Reeves; Rashmee U Shah; Christine A Goodrich; Glen Gobbel; Meagan E Stabler; Amy M Perkins; Freneka Minter; Kevin C Cox; Chad Dorn; Jason Denton; Bruce E Bray; Ramkiran Gouripeddi; John Higgins; Wendy W Chapman; Todd MacKenzie; Michael E Matheny
Journal:  J Am Heart Assoc       Date:  2022-03-24       Impact factor: 6.106

  4 in total

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