Literature DB >> 24551356

Using natural language processing on the free text of clinical documents to screen for evidence of homelessness among US veterans.

Adi V Gundlapalli1, Marjorie E Carter1, Miland Palmer1, Thomas Ginter1, Andrew Redd1, Steven Pickard1, Shuying Shen1, Brett South1, Guy Divita1, Scott Duvall1, Thien M Nguyen2, Leonard W D'Avolio2, Matthew Samore1.   

Abstract

Information retrieval algorithms based on natural language processing (NLP) of the free text of medical records have been used to find documents of interest from databases. Homelessness is a high priority non-medical diagnosis that is noted in electronic medical records of Veterans in Veterans Affairs (VA) facilities. Using a human-reviewed reference standard corpus of clinical documents of Veterans with evidence of homelessness and those without, an open-source NLP tool (Automated Retrieval Console v2.0, ARC) was trained to classify documents. The best performing model based on document level work-flow performed well on a test set (Precision 94%, Recall 97%, F-Measure 96). Processing of a naïve set of 10,000 randomly selected documents from the VA using this best performing model yielded 463 documents flagged as positive, indicating a 4.7% prevalence of homelessness. Human review noted a precision of 70% for these flags resulting in an adjusted prevalence of homelessness of 3.3% which matches current VA estimates. Further refinements are underway to improve the performance. We demonstrate an effective and rapid lifecycle of using an off-the-shelf NLP tool for screening targets of interest from medical records.

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Year:  2013        PMID: 24551356      PMCID: PMC3900197     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  20 in total

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Journal:  Infect Control Hosp Epidemiol       Date:  2010-07       Impact factor: 3.254

5.  A public health approach to reducing morbidity and mortality among homeless people in Boston.

Authors:  James J O'Connell; Shawn Mattison; Christine M Judge; H Joslyn Strupp Allen; Howard K Koh
Journal:  J Public Health Manag Pract       Date:  2005 Jul-Aug

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Authors:  M C White; J P Tulsky; C Dawson; A R Zolopa; A R Moss
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9.  Validating a strategy for psychosocial phenotyping using a large corpus of clinical text.

Authors:  Adi V Gundlapalli; Andrew Redd; Marjorie Carter; Guy Divita; Shuying Shen; Miland Palmer; Matthew H Samore
Journal:  J Am Med Inform Assoc       Date:  2013-10-29       Impact factor: 4.497

10.  Co-occurring medical and mental illness and substance use disorders among veteran clinic users with spinal cord injury patients with complexities.

Authors:  R Banerjea; P A Findley; B Smith; T Findley; U Sambamoorthi
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  22 in total

1.  Development and validation of a computer-based algorithm to identify foreign-born patients with HIV infection from the electronic medical record.

Authors:  J Levison; V Triant; E Losina; K Keefe; K Freedberg; S Regan
Journal:  Appl Clin Inform       Date:  2014-06-18       Impact factor: 2.342

2.  Towards the Inference of Social and Behavioral Determinants of Sexual Health: Development of a Gold-Standard Corpus with Semi-Supervised Learning.

Authors:  Daniel J Feller; Jason Zucker; Oliver Bear Don't Walk; Bharat Srikishan; Roxana Martinez; Henry Evans; Michael T Yin; Peter Gordon; Noémie Elhadad
Journal:  AMIA Annu Symp Proc       Date:  2018-12-05

3.  The effects of natural language processing on cross-institutional portability of influenza case detection for disease surveillance.

Authors:  Jeffrey P Ferraro; Ye Ye; Per H Gesteland; Peter J Haug; Fuchiang Rich Tsui; Gregory F Cooper; Rudy Van Bree; Thomas Ginter; Andrew J Nowalk; Michael Wagner
Journal:  Appl Clin Inform       Date:  2017-05-31       Impact factor: 2.342

4.  Predictive modeling of housing instability and homelessness in the Veterans Health Administration.

Authors:  Thomas Byrne; Ann Elizabeth Montgomery; Jamison D Fargo
Journal:  Health Serv Res       Date:  2018-09-21       Impact factor: 3.402

5.  Automatic prediction of coronary artery disease from clinical narratives.

Authors:  Kevin Buchan; Michele Filannino; Özlem Uzuner
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6.  Identifying Homeless Medicaid Enrollees Using Enrollment Addresses.

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Journal:  Health Serv Res       Date:  2017-07-03       Impact factor: 3.402

7.  Social Determinants and Military Veterans' Suicide Ideation and Attempt: a Cross-sectional Analysis of Electronic Health Record Data.

Authors:  John R Blosnich; Ann Elizabeth Montgomery; Melissa E Dichter; Adam J Gordon; Dio Kavalieratos; Laura Taylor; Bryan Ketterer; Robert M Bossarte
Journal:  J Gen Intern Med       Date:  2020-06       Impact factor: 5.128

8.  Detecting Social and Behavioral Determinants of Health with Structured and Free-Text Clinical Data.

Authors:  Daniel J Feller; Oliver J Bear Don't Walk Iv; Jason Zucker; Michael T Yin; Peter Gordon; Noémie Elhadad
Journal:  Appl Clin Inform       Date:  2020-03-04       Impact factor: 2.342

9.  Hospital Readmission and Social Risk Factors Identified from Physician Notes.

Authors:  Amol S Navathe; Feiran Zhong; Victor J Lei; Frank Y Chang; Margarita Sordo; Maxim Topaz; Shamkant B Navathe; Roberto A Rocha; Li Zhou
Journal:  Health Serv Res       Date:  2017-03-13       Impact factor: 3.402

10.  Validating a strategy for psychosocial phenotyping using a large corpus of clinical text.

Authors:  Adi V Gundlapalli; Andrew Redd; Marjorie Carter; Guy Divita; Shuying Shen; Miland Palmer; Matthew H Samore
Journal:  J Am Med Inform Assoc       Date:  2013-10-29       Impact factor: 4.497

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