Literature DB >> 34160816

The Use of circRNAs as Biomarkers of Cancer.

Carla Solé1, Gartze Mentxaka1, Charles H Lawrie2,3,4.   

Abstract

CircRNAs are a subclass of lncRNAs that have been found to be abundantly present in a wide range of species, including humans. CircRNAs are generally produced by a noncanonical splicing event called backsplicing that is dependent on the canonical splicing machinery, giving rise to circRNAs classified into three main categories: exonic circRNA, circular intronic RNA, and exon-intron circular RNA. Notably, circRNAs possess functional importance and display their functions through different mechanisms of action including sponging miRNAs, or even being translated into functional proteins. In addition, circRNAs also have great potential as biomarkers, particularly in cancer, thanks to their high stability, tissue type and developmental stage specificity, and their presence in biological fluids, which make them promising candidates as noninvasive biomarkers. In this chapter, we describe the most commonly used techniques for the study of circRNAs as cancer biomarkers, including high-throughput techniques such as RNA-Seq and microarrays, and other methods to analyze the presence of specific circRNAs in patient samples.

Entities:  

Keywords:  Biogenesis; Biomarkers; Cancer; Functions; Methodology; circRNA

Year:  2021        PMID: 34160816     DOI: 10.1007/978-1-0716-1581-2_21

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  211 in total

1.  Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures.

Authors:  H L Sanger; G Klotz; D Riesner; H J Gross; A K Kleinschmidt
Journal:  Proc Natl Acad Sci U S A       Date:  1976-11       Impact factor: 11.205

Review 2.  Multifaceted mammalian transcriptome.

Authors:  Piero Carninci; Jun Yasuda; Yoshihide Hayashizaki
Journal:  Curr Opin Cell Biol       Date:  2008-05-28       Impact factor: 8.382

Review 3.  Regulation of circRNA biogenesis.

Authors:  Ling-Ling Chen; Li Yang
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  The hepatitis delta (delta) virus possesses a circular RNA.

Authors:  A Kos; R Dijkema; A C Arnberg; P H van der Meide; H Schellekens
Journal:  Nature       Date:  1986 Oct 9-15       Impact factor: 49.962

5.  Noncanonical RNAs from transcripts of the Drosophila muscleblind gene.

Authors:  Jonathan M Houseley; Zaida Garcia-Casado; Maya Pascual; Nuria Paricio; Kevin M C O'Dell; Darren G Monckton; Ruben D Artero
Journal:  J Hered       Date:  2006-05-19       Impact factor: 2.645

6.  Chimeric RNA/ethylene-bridged nucleic acids promote dystrophin expression in myocytes of duchenne muscular dystrophy by inducing skipping of the nonsense mutation-encoding exon.

Authors:  Agus Surono; Tran Van Khanh; Yasuhiro Takeshima; Hiroko Wada; Mariko Yagi; Miho Takagi; Makoto Koizumi; Masafumi Matsuo
Journal:  Hum Gene Ther       Date:  2004-08       Impact factor: 5.695

7.  Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types.

Authors:  Julia Salzman; Charles Gawad; Peter Lincoln Wang; Norman Lacayo; Patrick O Brown
Journal:  PLoS One       Date:  2012-02-01       Impact factor: 3.240

8.  Non-coding RNA: what is functional and what is junk?

Authors:  Alexander F Palazzo; Eliza S Lee
Journal:  Front Genet       Date:  2015-01-26       Impact factor: 4.599

9.  CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomes.

Authors:  Wanying Wu; Peifeng Ji; Fangqing Zhao
Journal:  Genome Biol       Date:  2020-04-28       Impact factor: 13.583

10.  The human transcriptome: an unfinished story.

Authors:  Mihaela Pertea
Journal:  Genes (Basel)       Date:  2012-09       Impact factor: 4.096

View more
  3 in total

Review 1.  Transcriptome analysis provides critical answers to the "variants of uncertain significance" conundrum.

Authors:  Mackenzie D Postel; Julie O Culver; Charité Ricker; David W Craig
Journal:  Hum Mutat       Date:  2022-05-18       Impact factor: 4.700

Review 2.  Circular RNAs in hepatocellular carcinoma: Recent advances.

Authors:  Zhao-Shan Niu; Wen-Hong Wang
Journal:  World J Gastrointest Oncol       Date:  2022-06-15

Review 3.  Stem cell-derived exosomal transcriptomes for wound healing.

Authors:  Guiling Chen; Hankun Chen; Xiang Zeng; Wei Zhu
Journal:  Front Surg       Date:  2022-08-12
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.