Literature DB >> 18468878

Multifaceted mammalian transcriptome.

Piero Carninci1, Jun Yasuda, Yoshihide Hayashizaki.   

Abstract

Despite surprisingly a small number of protein-coding gene in mammalian genomes, a large variety of different RNAs is being produced. These RNAs are amazingly different in their number, size, cell localization, and mechanism of actions. Although new classes of short RNAs (sRNAs) are being continuously discovered, it is not yet obvious how many of the sRNAs are originated. Altogether, the research in the recent few years has identified an unexpectedly rich variety of mechanisms by which noncoding RNAs act, suggesting that we have identified probably only few of the many potential functional mechanism and more investigation will be needed to comprehensively understand the complex nature and biology of mammalian RNAome. Here, we focus on various aspects of the diversity of the biological role of these nonprotein-coding RNAs (ncRNAs), with emphasis on functional mechanisms recently elucidated.

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Year:  2008        PMID: 18468878     DOI: 10.1016/j.ceb.2008.03.008

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  43 in total

1.  The lytic transcriptome of Kaposi's sarcoma-associated herpesvirus reveals extensive transcription of noncoding regions, including regions antisense to important genes.

Authors:  Sanjay Chandriani; Yiyang Xu; Don Ganem
Journal:  J Virol       Date:  2010-06-09       Impact factor: 5.103

2.  The long noncoding RNA Vax2os1 controls the cell cycle progression of photoreceptor progenitors in the mouse retina.

Authors:  Nicola Meola; Mariateresa Pizzo; Giovanna Alfano; Enrico Maria Surace; Sandro Banfi
Journal:  RNA       Date:  2011-11-29       Impact factor: 4.942

Review 3.  microRNAs in heart disease: putative novel therapeutic targets?

Authors:  Gianluigi Condorelli; Michael V G Latronico; Gerald W Dorn
Journal:  Eur Heart J       Date:  2010-01-29       Impact factor: 29.983

4.  Molecular biology: The long and short of RNAs.

Authors:  Piero Carninci
Journal:  Nature       Date:  2009-02-19       Impact factor: 49.962

5.  Missing lincs in the transcriptome.

Authors:  Thomas Gingeras
Journal:  Nat Biotechnol       Date:  2009-04       Impact factor: 54.908

Review 6.  Clinical significance of the interaction between non-coding RNAs and the epigenetics machinery: challenges and opportunities in oncology.

Authors:  Beatriz M Maia; Rafael M Rocha; George A Calin
Journal:  Epigenetics       Date:  2013-10-11       Impact factor: 4.528

Review 7.  Long noncoding RNAs as metazoan developmental regulators.

Authors:  Jamila I Horabin
Journal:  Chromosome Res       Date:  2013-12       Impact factor: 5.239

Review 8.  Making sense of antisense: seemingly noncoding RNAs antisense to the master regulator of Kaposi's sarcoma-associated herpesvirus lytic replication do not regulate that transcript but serve as mRNAs encoding small peptides.

Authors:  Yiyang Xu; Don Ganem
Journal:  J Virol       Date:  2010-03-31       Impact factor: 5.103

Review 9.  The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs.

Authors:  Alain Jacquier
Journal:  Nat Rev Genet       Date:  2009-12       Impact factor: 53.242

10.  Improved RNA preservation for immunolabeling and laser microdissection.

Authors:  Amanda L Brown; Doug W Smith
Journal:  RNA       Date:  2009-10-22       Impact factor: 4.942

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