Literature DB >> 34140336

Physical bioenergetics: Energy fluxes, budgets, and constraints in cells.

Xingbo Yang1,2, Matthias Heinemann3, Jonathon Howard4, Greg Huber5, Srividya Iyer-Biswas6,7, Guillaume Le Treut5, Michael Lynch8, Kristi L Montooth9, Daniel J Needleman10,2,11, Simone Pigolotti12, Jonathan Rodenfels13, Pierre Ronceray14,15, Sadasivan Shankar2,16,17, Iman Tavassoly18, Shashi Thutupalli19,20, Denis V Titov21,22,23, Jin Wang24, Peter J Foster25.   

Abstract

Cells are the basic units of all living matter which harness the flow of energy to drive the processes of life. While the biochemical networks involved in energy transduction are well-characterized, the energetic costs and constraints for specific cellular processes remain largely unknown. In particular, what are the energy budgets of cells? What are the constraints and limits energy flows impose on cellular processes? Do cells operate near these limits, and if so how do energetic constraints impact cellular functions? Physics has provided many tools to study nonequilibrium systems and to define physical limits, but applying these tools to cell biology remains a challenge. Physical bioenergetics, which resides at the interface of nonequilibrium physics, energy metabolism, and cell biology, seeks to understand how much energy cells are using, how they partition this energy between different cellular processes, and the associated energetic constraints. Here we review recent advances and discuss open questions and challenges in physical bioenergetics.

Entities:  

Keywords:  energetic constraints; energetic costs; energy fluxes; physical bioenergetics

Mesh:

Year:  2021        PMID: 34140336      PMCID: PMC8255778          DOI: 10.1073/pnas.2026786118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  115 in total

1.  Thermodynamic constraints for biochemical networks.

Authors:  Daniel A Beard; Eric Babson; Edward Curtis; Hong Qian
Journal:  J Theor Biol       Date:  2004-06-07       Impact factor: 2.691

2.  Entropy production along a stochastic trajectory and an integral fluctuation theorem.

Authors:  Udo Seifert
Journal:  Phys Rev Lett       Date:  2005-07-20       Impact factor: 9.161

3.  The nonequilibrium mechanism for ultrasensitivity in a biological switch: sensing by Maxwell's demons.

Authors:  Yuhai Tu
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-07       Impact factor: 11.205

4.  The cost of sensitive response and accurate adaptation in networks with an incoherent type-1 feed-forward loop.

Authors:  Ganhui Lan; Yuhai Tu
Journal:  J R Soc Interface       Date:  2013-07-24       Impact factor: 4.118

5.  Nonequilibrium Energetics of Molecular Motor Kinesin.

Authors:  Takayuki Ariga; Michio Tomishige; Daisuke Mizuno
Journal:  Phys Rev Lett       Date:  2018-11-23       Impact factor: 9.161

6.  A theoretical study on the amount of ATP required for synthesis of microbial cell material.

Authors:  A H Stouthamer
Journal:  Antonie Van Leeuwenhoek       Date:  1973       Impact factor: 2.271

Review 7.  Mitochondrial function in the human oocyte and embryo and their role in developmental competence.

Authors:  Jonathan Van Blerkom
Journal:  Mitochondrion       Date:  2010-10-07       Impact factor: 4.160

8.  Rapid effects of acute anoxia on spindle kinetochore interactions activate the mitotic spindle checkpoint.

Authors:  Rahul Pandey; Sebastian Heeger; Christian F Lehner
Journal:  J Cell Sci       Date:  2007-07-24       Impact factor: 5.285

Review 9.  A Theoretical Framework for Evolutionary Cell Biology.

Authors:  Michael Lynch; Bogi Trickovic
Journal:  J Mol Biol       Date:  2020-02-19       Impact factor: 5.469

10.  Contribution of increasing plasma membrane to the energetic cost of early zebrafish embryogenesis.

Authors:  Jonathan Rodenfels; Pablo Sartori; Stefan Golfier; Kartikeya Nagendra; Karla M Neugebauer; Jonathon Howard
Journal:  Mol Biol Cell       Date:  2020-02-12       Impact factor: 4.138

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  3 in total

1.  Endocrine disruption from plastic pollution and warming interact to increase the energetic cost of growth in a fish.

Authors:  Nicholas C Wu; Alexander M Rubin; Frank Seebacher
Journal:  Proc Biol Sci       Date:  2022-01-26       Impact factor: 5.349

2.  A coarse-grained NADH redox model enables inference of subcellular metabolic fluxes from fluorescence lifetime imaging.

Authors:  Xingbo Yang; Gloria Ha; Daniel J Needleman
Journal:  Elife       Date:  2021-11-22       Impact factor: 8.140

Review 3.  Shape Deformation, Budding and Division of Giant Vesicles and Artificial Cells: A Review.

Authors:  Ylenia Miele; Gábor Holló; István Lagzi; Federico Rossi
Journal:  Life (Basel)       Date:  2022-06-06
  3 in total

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