Literature DB >> 32087200

A Theoretical Framework for Evolutionary Cell Biology.

Michael Lynch1, Bogi Trickovic2.   

Abstract

One of the last uncharted territories in evolutionary biology concerns the link with cell biology. Because all phenotypes ultimately derive from events at the cellular level, this connection is essential to building a mechanism-based theory of evolution. Given the impressive developments in cell biological methodologies at the structural and functional levels, the potential for rapid progress is great. The primary challenge for theory development is the establishment of a quantitative framework that transcends species boundaries. Two approaches to the problem are presented here: establishing the long-term steady-state distribution of mean phenotypes under specific regimes of mutation, selection, and drift and evaluating the energetic costs of cellular structures and functions. Although not meant to be the final word, these theoretical platforms harbor potential for generating insight into a diversity of unsolved problems, ranging from genome structure to cellular architecture to aspects of motility in organisms across the Tree of Life.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  bacterial envelope; bioenergetic costs; cell motility; evolutionary cell biology; population genetics

Mesh:

Year:  2020        PMID: 32087200      PMCID: PMC8025685          DOI: 10.1016/j.jmb.2020.02.006

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  94 in total

1.  On the possibility of constructive neutral evolution.

Authors:  A Stoltzfus
Journal:  J Mol Evol       Date:  1999-08       Impact factor: 2.395

2.  Evolution of characterized phosphorylation sites in budding yeast.

Authors:  Alex N Nguyen Ba; Alan M Moses
Journal:  Mol Biol Evol       Date:  2010-04-05       Impact factor: 16.240

3.  Cell biology. Irremediable complexity?

Authors:  Michael W Gray; Julius Lukes; John M Archibald; Patrick J Keeling; W Ford Doolittle
Journal:  Science       Date:  2010-11-12       Impact factor: 47.728

4.  The bioenergetic costs of a gene.

Authors:  Michael Lynch; Georgi K Marinov
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

Review 5.  Cytoplasmic steps of peptidoglycan biosynthesis.

Authors:  Hélène Barreteau; Andreja Kovac; Audrey Boniface; Matej Sova; Stanislav Gobec; Didier Blanot
Journal:  FEMS Microbiol Rev       Date:  2008-02-11       Impact factor: 16.408

6.  Substantial energy expenditure for locomotion in ciliates verified by means of simultaneous measurement of oxygen consumption rate and swimming speed.

Authors:  Yumiko Katsu-Kimura; Fumio Nakaya; Shoji A Baba; Yoshihiro Mogami
Journal:  J Exp Biol       Date:  2009-06       Impact factor: 3.312

7.  Metabolic efficiency and amino acid composition in the proteomes of Escherichia coli and Bacillus subtilis.

Authors:  Hiroshi Akashi; Takashi Gojobori
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-19       Impact factor: 11.205

8.  Evolutionary tinkering with conserved components of a transcriptional regulatory network.

Authors:  Hugo Lavoie; Hervé Hogues; Jaideep Mallick; Adnane Sellam; André Nantel; Malcolm Whiteway
Journal:  PLoS Biol       Date:  2010-03-09       Impact factor: 8.029

9.  The landscape of transcription errors in eukaryotic cells.

Authors:  Jean-Francois Gout; Weiyi Li; Clark Fritsch; Annie Li; Suraiya Haroon; Larry Singh; Ding Hua; Hossein Fazelinia; Zach Smith; Steven Seeholzer; Kelley Thomas; Michael Lynch; Marc Vermulst
Journal:  Sci Adv       Date:  2017-10-20       Impact factor: 14.136

10.  γ-proteobacteria eject their polar flagella under nutrient depletion, retaining flagellar motor relic structures.

Authors:  Josie L Ferreira; Forson Z Gao; Florian M Rossmann; Andrea Nans; Susanne Brenzinger; Rohola Hosseini; Amanda Wilson; Ariane Briegel; Kai M Thormann; Peter B Rosenthal; Morgan Beeby
Journal:  PLoS Biol       Date:  2019-03-19       Impact factor: 8.029

View more
  10 in total

1.  Physical bioenergetics: Energy fluxes, budgets, and constraints in cells.

Authors:  Xingbo Yang; Matthias Heinemann; Jonathon Howard; Greg Huber; Srividya Iyer-Biswas; Guillaume Le Treut; Michael Lynch; Kristi L Montooth; Daniel J Needleman; Simone Pigolotti; Jonathan Rodenfels; Pierre Ronceray; Sadasivan Shankar; Iman Tavassoly; Shashi Thutupalli; Denis V Titov; Jin Wang; Peter J Foster
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-29       Impact factor: 11.205

Review 2.  Constructive Neutral Evolution 20 Years Later.

Authors:  Jeremy G Wideman; Kerry Geiler-Samerotte; Sergio A Muñoz-Gómez; Gaurav Bilolikar
Journal:  J Mol Evol       Date:  2021-02-19       Impact factor: 2.395

3.  Inferring the distribution of fitness effects in patient-sampled and experimental virus populations: two case studies.

Authors:  Ana Y Morales-Arce; Parul Johri; Jeffrey D Jensen
Journal:  Heredity (Edinb)       Date:  2022-01-05       Impact factor: 3.821

4.  Rapid evolution of mutation rate and spectrum in response to environmental and population-genetic challenges.

Authors:  Wen Wei; Wei-Chin Ho; Megan G Behringer; Samuel F Miller; George Bcharah; Michael Lynch
Journal:  Nat Commun       Date:  2022-08-13       Impact factor: 17.694

5.  Flagellar energy costs across the tree of life.

Authors:  Paul E Schavemaker; Michael Lynch
Journal:  Elife       Date:  2022-07-26       Impact factor: 8.713

Review 6.  Cell types as species: Exploring a metaphor.

Authors:  Jeff J Doyle
Journal:  Front Plant Sci       Date:  2022-08-22       Impact factor: 6.627

7.  Independent accretion of TIM22 complex subunits in the animal and fungal lineages.

Authors:  Shannon N Snyder; Samantha J Montoya; Sergio A Muñoz-Gómez; Jeremy G Wideman
Journal:  F1000Res       Date:  2020-08-28

Review 8.  Imposed mutational meltdown as an antiviral strategy.

Authors:  Jeffrey D Jensen; Ryan A Stikeleather; Timothy F Kowalik; Michael Lynch
Journal:  Evolution       Date:  2020-10-27       Impact factor: 3.694

9.  Comparative Population Genetics in the Human Gut Microbiome.

Authors:  William R Shoemaker; Daisy Chen; Nandita R Garud
Journal:  Genome Biol Evol       Date:  2022-01-04       Impact factor: 3.416

10.  Molecular Evolutionary Dynamics of Energy Limited Microorganisms.

Authors:  William R Shoemaker; Evgeniya Polezhaeva; Kenzie B Givens; Jay T Lennon
Journal:  Mol Biol Evol       Date:  2021-09-27       Impact factor: 16.240

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.