Literature DB >> 34127856

ABEL-FRET: tether-free single-molecule FRET with hydrodynamic profiling.

Hugh Wilson1, Quan Wang2.   

Abstract

Single-molecule Förster resonance energy transfer (smFRET) has become a versatile and widespread method to probe nanoscale conformation and dynamics. However, current experimental modalities often resort to molecule immobilization for long observation times and do not always approach the resolution limit of FRET-based nanoscale metrology. Here we present ABEL-FRET, an immobilization-free platform for smFRET measurements with ultrahigh resolving power in FRET efficiency. Importantly, single-molecule diffusivity is used to provide additional size and shape information for hydrodynamic profiling of individual molecules, which, together with the concurrently measured intramolecular conformation through FRET, enables a holistic and dynamic view of biomolecules and their complexes.

Year:  2021        PMID: 34127856     DOI: 10.1038/s41592-021-01173-9

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  36 in total

1.  Information bounds and optimal analysis of dynamic single molecule measurements.

Authors:  Lucas P Watkins; Haw Yang
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

2.  Defining the limits of single-molecule FRET resolution in TIRF microscopy.

Authors:  Seamus J Holden; Stephan Uphoff; Johannes Hohlbein; David Yadin; Ludovic Le Reste; Oliver J Britton; Achillefs N Kapanidis
Journal:  Biophys J       Date:  2010-11-03       Impact factor: 4.033

Review 3.  Surfaces and orientations: much to FRET about?

Authors:  Ivan Rasnik; Sean A McKinney; Taekjip Ha
Journal:  Acc Chem Res       Date:  2005-07       Impact factor: 22.384

4.  Effects of surface tethering on protein folding mechanisms.

Authors:  Miriam Friedel; Andrij Baumketner; Joan-Emma Shea
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-18       Impact factor: 11.205

5.  Shot-noise limited single-molecule FRET histograms: comparison between theory and experiments.

Authors:  Eyal Nir; Xavier Michalet; Kambiz M Hamadani; Ted A Laurence; Daniel Neuhauser; Yevgeniy Kovchegov; Shimon Weiss
Journal:  J Phys Chem B       Date:  2006-11-09       Impact factor: 2.991

6.  Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.

Authors:  T Ha; T Enderle; D F Ogletree; D S Chemla; P R Selvin; S Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  1996-06-25       Impact factor: 11.205

7.  Single-molecule motions enable direct visualization of biomolecular interactions in solution.

Authors:  Quan Wang; W E Moerner
Journal:  Nat Methods       Date:  2014-03-09       Impact factor: 28.547

8.  Continuous throughput and long-term observation of single-molecule FRET without immobilization.

Authors:  Swati Tyagi; Virginia VanDelinder; Niccolò Banterle; Gustavo Fuertes; Sigrid Milles; Morgane Agez; Edward A Lemke
Journal:  Nat Methods       Date:  2014-01-19       Impact factor: 28.547

Review 9.  Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer.

Authors:  Eitan Lerner; Thorben Cordes; Antonino Ingargiola; Yazan Alhadid; SangYoon Chung; Xavier Michalet; Shimon Weiss
Journal:  Science       Date:  2018-01-19       Impact factor: 47.728

10.  Single-molecule imaging of non-equilibrium molecular ensembles on the millisecond timescale.

Authors:  Manuel F Juette; Daniel S Terry; Michael R Wasserman; Roger B Altman; Zhou Zhou; Hong Zhao; Scott C Blanchard
Journal:  Nat Methods       Date:  2016-02-15       Impact factor: 28.547

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  2 in total

Review 1.  FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.

Authors:  Eitan Lerner; Anders Barth; Jelle Hendrix; Benjamin Ambrose; Victoria Birkedal; Scott C Blanchard; Richard Börner; Hoi Sung Chung; Thorben Cordes; Timothy D Craggs; Ashok A Deniz; Jiajie Diao; Jingyi Fei; Ruben L Gonzalez; Irina V Gopich; Taekjip Ha; Christian A Hanke; Gilad Haran; Nikos S Hatzakis; Sungchul Hohng; Seok-Cheol Hong; Thorsten Hugel; Antonino Ingargiola; Chirlmin Joo; Achillefs N Kapanidis; Harold D Kim; Ted Laurence; Nam Ki Lee; Tae-Hee Lee; Edward A Lemke; Emmanuel Margeat; Jens Michaelis; Xavier Michalet; Sua Myong; Daniel Nettels; Thomas-Otavio Peulen; Evelyn Ploetz; Yair Razvag; Nicole C Robb; Benjamin Schuler; Hamid Soleimaninejad; Chun Tang; Reza Vafabakhsh; Don C Lamb; Claus Am Seidel; Shimon Weiss
Journal:  Elife       Date:  2021-03-29       Impact factor: 8.140

2.  Joint Detection of Change Points in Multichannel Single-Molecule Measurements.

Authors:  Hugh Wilson; Quan Wang
Journal:  J Phys Chem B       Date:  2021-12-06       Impact factor: 3.466

  2 in total

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